View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0302_1D_low_16 (Length: 297)
Name: NF0302_1D_low_16
Description: NF0302_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0302_1D_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 52721087 - 52720889
Alignment:
| Q |
15 |
gacatcaatatttgcatttaaaagttataacttaaaattaatgagtaaaatcattttttgaattttaaattatactctgtcaagctaatgcagaccatcc |
114 |
Q |
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| T |
52721087 |
gacatcaatatttgcatttaaaagttataacttaaaattaatgagtaaaatcattttttgaattttaaattatactctgtcaagctaatgcagaccatcc |
52720988 |
T |
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| Q |
115 |
tctgctagaattagttgaaaattgttaaagtggttacaatccttgtatgatcagttagcttagttagaatcattgtttgaattttgtcctatactagtt |
213 |
Q |
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| T |
52720987 |
tctgctagaattagttgaaaattgttaaagtggttacaatccttgtatgatcagttagcttagttagaatcattgtttgaattttgtcctatactagtt |
52720889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 52712264 - 52712011
Alignment:
| Q |
16 |
acatcaatatttgcatttaaaagttataacttaaaattaatgagtaaaatcattttttgaattttaaattatactctgtcaagctaatgcagaccatcct |
115 |
Q |
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| T |
52712264 |
acatcgatatttgcatttaaaagtttaaacttaaa-ttaatgagtaaaattattttt-gaattttaaactgaactctgtcaatttaatgcagtccatcct |
52712167 |
T |
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| Q |
116 |
ctgctagaattagttgaaaattgttaaagtggttacaatccttgtatgatcagttagcttagttagaatcattgtttgaattttgtcctatactagttat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52712166 |
ctgctagaattagttgaaaattgttaaagtggttacaatccttgtatgatcagttagcttagttggaatcattgtttgaattttgtcctatactagttat |
52712067 |
T |
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| Q |
216 |
tatggttcagaacaaaagtcaaaaagtatgatatcatcagttgatttgaattactt |
271 |
Q |
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| T |
52712066 |
tatggttcagaacaaaagtcaaaaactatgatatcatcagttgatttgaattactt |
52712011 |
T |
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