View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0302_1D_low_17 (Length: 294)
Name: NF0302_1D_low_17
Description: NF0302_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0302_1D_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 5512415 - 5512214
Alignment:
| Q |
23 |
agtaactgcgtgacgtggttaattttcttaaccaggattcgaattaaacaatcaaaattatttaactacattaaaactgatgtataattaagatcgtctg |
122 |
Q |
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| T |
5512415 |
agtaactgcgtgacgtggttaattttcttaaccaggattcgaattaaacaatcaaaattatttaactacattaaaactgatgtataattaagatcgtctg |
5512316 |
T |
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| Q |
123 |
attcaacaatcaatattaactgcatcagagttgaggagggcttgtagaaaaagatattacaacgaatgatgtatttgaatataaaaaatacattatttat |
222 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5512315 |
attcaacaatcaatattaactgcatcagagctgaggagggcttgtagaaaaagatattacaatgaatgatgtatttgaatataaaaaatacattatttat |
5512216 |
T |
|
| Q |
223 |
aa |
224 |
Q |
| |
|
|| |
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| T |
5512215 |
aa |
5512214 |
T |
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