View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0302_1D_low_18 (Length: 263)
Name: NF0302_1D_low_18
Description: NF0302_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0302_1D_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 41995349 - 41995131
Alignment:
| Q |
23 |
cagctcatgagcaagatcattgaattcgagtgcacttccattgcattttgatagcaactgagtggcttgttcctttgttaatctgattttcactctaatt |
122 |
Q |
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| T |
41995349 |
cagctcatgagcaagatcattgaattcgagtgcacttccattgcattttgatagcaactgagtggcttgttcctttgttaatctgattttcactctaatt |
41995250 |
T |
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| Q |
123 |
ccctctttatctcctaattcattactaatacatcttcttttctcaaattgatctttttcgttttcttctcccaaaatggtaggttctgaatccacaaacc |
222 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41995249 |
ccctctttttctcctaattcattactaatacatcttcttttctcaaattgatctttttcgttttcttctcccaaaatggtaggttctgaatccacaaacc |
41995150 |
T |
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| Q |
223 |
tgactcttttcttcattgt |
241 |
Q |
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||||||||||||||||||| |
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| T |
41995149 |
tgactcttttcttcattgt |
41995131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 41984038 - 41983826
Alignment:
| Q |
26 |
ctcatgagcaagatcattgaattcgagtgcacttccattgcattttgatagcaactgagtggcttgttcctttgttaatctgattttcactctaattccc |
125 |
Q |
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|||| |||||| ||| || ||||| || |||||||||||||| |||||||||||| || |||||||||||||||||||| || |||||||||||||| |
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| T |
41984038 |
ctcacgagcaacatccttcaattcaagaacacttccattgcatcttgatagcaactcagctgcttgttcctttgttaatctaatcgtcactctaattccc |
41983939 |
T |
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| Q |
126 |
tctttatctcctaattcat---tactaatacatcttcttttctcaaattgatctttttcgttttcttctcccaaaatggtaggttctgaatccacaaacc |
222 |
Q |
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| T |
41983938 |
tctttttctactaaatcattactactaatacatctttttttctcaaattcttcattgttgttttcttctcccaaaatggttggttctgagtccacaaacc |
41983839 |
T |
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| Q |
223 |
tgactcttttctt |
235 |
Q |
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||| |||||||| |
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| T |
41983838 |
ggacccttttctt |
41983826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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