View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0302_1D_low_23 (Length: 239)
Name: NF0302_1D_low_23
Description: NF0302_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0302_1D_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 38252894 - 38252676
Alignment:
| Q |
15 |
tgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38252894 |
tgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgc |
38252795 |
T |
|
| Q |
115 |
gctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgcca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38252794 |
gctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgcca |
38252695 |
T |
|
| Q |
215 |
taattttacatgtatctta |
233 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
38252694 |
taattttacatgtatctta |
38252676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 43156648 - 43156866
Alignment:
| Q |
15 |
tgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43156648 |
tgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgc |
43156747 |
T |
|
| Q |
115 |
gctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgcca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43156748 |
gctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgcca |
43156847 |
T |
|
| Q |
215 |
taattttacatgtatctta |
233 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
43156848 |
taattttacatgtatctta |
43156866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 11473972 - 11474190
Alignment:
| Q |
15 |
tgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11473972 |
tgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgc |
11474071 |
T |
|
| Q |
115 |
gctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgcca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
11474072 |
gctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttaattttacttgttttggtgactgcca |
11474171 |
T |
|
| Q |
215 |
taattttacatgtatctta |
233 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
11474172 |
taattttacatgtatctta |
11474190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 28246064 - 28245861
Alignment:
| Q |
15 |
tgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28246064 |
tgtgagtttggattttatgcaagcaaaggggttcagggtacaacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgc |
28245965 |
T |
|
| Q |
115 |
gctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgcca |
214 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28245964 |
gct---------------ccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgcca |
28245880 |
T |
|
| Q |
215 |
taattttacatgtatctta |
233 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28245879 |
taattttacatgtatctta |
28245861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 50019647 - 50019454
Alignment:
| Q |
15 |
tgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgc |
114 |
Q |
| |
|
|||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||| |
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|
| T |
50019647 |
tgtgagttcagatgttctgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttttctggaaaaccagcaaagtcgc |
50019548 |
T |
|
| Q |
115 |
gctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtga |
208 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||| |
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|
| T |
50019547 |
gctacatctagttgcgctccacgtaaagaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtga |
50019454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 233
Target Start/End: Complemental strand, 19307756 - 19307538
Alignment:
| Q |
15 |
tgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19307756 |
tgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtttggaaaaacagcatagtcgc |
19307657 |
T |
|
| Q |
115 |
gctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgcca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19307656 |
gctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttatttttacttgttttggtgactgcca |
19307557 |
T |
|
| Q |
215 |
taattttacatgtatctta |
233 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
19307556 |
taattttacatgtatctta |
19307538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 25382085 - 25382303
Alignment:
| Q |
15 |
tgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgc |
114 |
Q |
| |
|
|||||||| | || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25382085 |
tgtgagttcgaatgttatgcaagcaaaggggttcaaggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgc |
25382184 |
T |
|
| Q |
115 |
gctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgcca |
214 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25382185 |
gctacatctagccgcgctccacctaaagaaaaaagttcacaggtatatgagttggtatttaaagtacttgttttaattttacttgttttggtgactgcca |
25382284 |
T |
|
| Q |
215 |
taattttacatgtatctta |
233 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
25382285 |
taattttacatgtatctta |
25382303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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