View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0302_1D_low_3 (Length: 492)

Name: NF0302_1D_low_3
Description: NF0302_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0302_1D_low_3
NF0302_1D_low_3
[»] chr8 (3 HSPs)
chr8 (76-492)||(11484385-11484801)
chr8 (24-73)||(11484310-11484359)
chr8 (226-376)||(44958110-44958260)
[»] chr3 (43 HSPs)
chr3 (76-492)||(10031359-10031790)
chr3 (76-492)||(10126284-10126715)
chr3 (76-492)||(10260054-10260485)
chr3 (76-492)||(10662882-10663313)
chr3 (76-492)||(10183595-10184029)
chr3 (211-376)||(10376246-10376411)
chr3 (211-376)||(10580104-10580269)
chr3 (243-376)||(9838396-9838529)
chr3 (243-376)||(9849274-9849407)
chr3 (208-412)||(13289165-13289369)
chr3 (280-412)||(13332476-13332608)
chr3 (280-412)||(13343661-13343793)
chr3 (74-165)||(11131638-11131729)
chr3 (74-165)||(11160629-11160720)
chr3 (74-165)||(10888672-10888763)
chr3 (74-165)||(11149466-11149557)
chr3 (280-370)||(8860858-8860948)
chr3 (211-376)||(10434445-10434610)
chr3 (280-412)||(13160552-13160684)
chr3 (74-165)||(8860652-8860743)
chr3 (211-366)||(10364209-10364364)
chr3 (243-376)||(10076801-10076934)
chr3 (280-393)||(11768806-11768919)
chr3 (280-376)||(10088362-10088458)
chr3 (280-376)||(11149255-11149351)
chr3 (280-334)||(10517060-10517114)
chr3 (280-370)||(10526931-10527021)
chr3 (280-334)||(10541546-10541600)
chr3 (280-334)||(11782422-11782476)
chr3 (280-376)||(10195245-10195341)
chr3 (456-492)||(10500304-10500340)
chr3 (280-376)||(10888878-10888974)
chr3 (280-376)||(11160418-11160514)
chr3 (456-492)||(11782288-11782324)
chr3 (280-412)||(13170603-13170735)
chr3 (280-335)||(10500149-10500204)
chr3 (74-128)||(11162767-11162821)
chr3 (300-393)||(11131410-11131503)
chr3 (75-171)||(9838228-9838324)
chr3 (75-171)||(9849106-9849202)
chr3 (145-189)||(10088227-10088271)
chr3 (145-189)||(10195110-10195154)
chr3 (456-492)||(10517212-10517248)
[»] chr6 (1 HSPs)
chr6 (280-337)||(31680179-31680236)
[»] scaffold0083 (1 HSPs)
scaffold0083 (280-376)||(50206-50302)
[»] scaffold0002 (2 HSPs)
scaffold0002 (280-412)||(146304-146436)
scaffold0002 (280-412)||(136253-136385)
[»] chr2 (1 HSPs)
chr2 (280-376)||(26906469-26906565)
[»] chr7 (1 HSPs)
chr7 (103-165)||(22827528-22827590)
[»] chr4 (3 HSPs)
chr4 (111-165)||(8438888-8438942)
chr4 (456-492)||(17853229-17853265)
chr4 (280-376)||(17853321-17853417)


Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 76 - 492
Target Start/End: Original strand, 11484385 - 11484801
Alignment:
Q  76 agatggctgcagctttgattggaagtgcatttctgtctgcttcagttcaaaccctaatggacaaactaacttcaactgagtttcgtgattatatcacaaa 175  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11484385 agatggctgcagctttgattggaggtgcatttctgtctgcttcagttcaaaccctaatggacaaactaacttcaactgagtttcgtgattatatcacaaa 11484484  T
Q  176 aaccaagttgaatgaatctttgatggaagaaatggaaacaacactacttgctcttgaggttgtgcttgatgatgcagaagagaagcagatccttcaaccc 275  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11484485 aaccaagttgaatgaatcattgatggaagaaatggaaacaacactacttgctcttgaggttgtgcttgatgatgcagaagagaagcagatccttcaaccc 11484584  T
Q  276 aaaatcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagaga 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  11484585 aaaatcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgcttaatgaaatcagctatgatgccttgcgatgcaaggtagaga 11484684  T
Q  376 agaaacaagatggaaacattacagatcagttttggaatttgctttcaacttcaaactcaaatggagaaagcaatactgaaatggagaagatttgtaaaag 475  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||| |||||| |||||||||||||||||||||||||    
T  11484685 agaaacaagatggaaacattacagatcagttttggaacttgctttcaactaaaaactcaaatggagagagcaattctgaaatggagaagatttgtaaaag 11484784  T
Q  476 gctgcaaacttttgtcc 492  Q
    |||||||||||||||||    
T  11484785 gctgcaaacttttgtcc 11484801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 11484310 - 11484359
Alignment:
Q  24 atccttcaatcttcatagctcttcaaaatttcatttacaactttttatcc 73  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11484310 atccttcaatcttcatatctcttcaaaatttcatttacaactttttatcc 11484359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 376
Target Start/End: Complemental strand, 44958260 - 44958110
Alignment:
Q  226 ctcttgaggttgtgcttgatgatgcagaagagaagcagatccttcaacccaaaa-tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctg 324  Q
    ||||| |||||||||||||||||||||| |||||||| |||   |||||  |   |||||||||||||||||   |||||| || |||| |||||||| |    
T  44958260 ctcttcaggttgtgcttgatgatgcagaggagaagcaaatcac-caaccttactgtcaaacaatggcttgatgacttgaaaaatacaatatttgatgccg 44958162  T
Q  325 aggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaa 376  Q
    |||||||||||||  |||| ||||| ||| || |||| ||||| || |||||    
T  44958161 aggatttgctcaaccaaattagctatgattccctgcgttgcaaagtggagaa 44958110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 76 - 492
Target Start/End: Original strand, 10031359 - 10031790
Alignment:
Q  76 agatggctgcagctttgattggaagtgcatttctgtctgcttcagttcaaaccctaatggacaaactaacttcaactgagtttcgtgattatatcacaaa 175  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |  |||||||| |||||||||||||||||||||| ||||||||||||||||| |||||    
T  10031359 agatggctgcagctttggttggaggtgcatttctgtctgctactcttcaaaccttaatggacaaactaacttcaaccgagtttcgtgattatataacaaa 10031458  T
Q  176 aaccaagttgaatgaatctttgatggaagaaatggaaacaacactacttgctcttgaggttgtgcttgatgatgcagaagagaagcagatccttcaaccc 275  Q
    ||| |||||||||||||| |||||||| || ||||||||||  |||||| ||||||||||||| || ||||||||||| ||||||||||||||  |||||    
T  10031459 aacaaagttgaatgaatcattgatggatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaaccc 10031558  T
Q  276 aaaatcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagaga 375  Q
    | ||||||||||||| | |||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| | ||||||||| | ||||    
T  10031559 agaatcaaacaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatcagctacaatgccatacgatgcaagctggaga 10031658  T
Q  376 agaaacaag--------------atgga-aacattacagatcagttttggaatttgctttcaacttcaaactcaaatggagaaagcaatactgaaatgga 460  Q
    |||||||||              ||||| || ||||||||||||||| |||| |||||||||||| |||||||||||| ||| | |||| ||||||||||    
T  10031659 agaaacaagctatcaattctgaaatggagaagattacagatcagtttcggaacttgctttcaactacaaactcaaatgaagagatcaattctgaaatgga 10031758  T
Q  461 gaagatttgtaaaaggctgcaaacttttgtcc 492  Q
    ||||||||||||||||||||||||||||||||    
T  10031759 gaagatttgtaaaaggctgcaaacttttgtcc 10031790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 76 - 492
Target Start/End: Original strand, 10126284 - 10126715
Alignment:
Q  76 agatggctgcagctttgattggaagtgcatttctgtctgcttcagttcaaaccctaatggacaaactaacttcaactgagtttcgtgattatatcacaaa 175  Q
    ||||||||||||||||| ||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||     
T  10126284 agatggctgcagctttggttggaggtgcgtttctgtctgcttctgttcaaaccttaatggacaaactaacttcacctgagtttcgtgattatttcacaag 10126383  T
Q  176 aaccaagttgaatgaatctttgatggaagaaatggaaacaacactacttgctcttgaggttgtgcttgatgatgcagaagagaagcagatccttcaaccc 275  Q
    |||  ||||||||||||| |||||| | || ||||||||||  |||||| ||||||||||||| || ||||||||||| ||||||||||||||  |||||    
T  10126384 aacagagttgaatgaatcattgatgtatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaaccc 10126483  T
Q  276 aaaatcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagaga 375  Q
    | ||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| | ||||||||| | ||||    
T  10126484 agaatcaaacaatggctggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatcagctacaatgccctacgatgcaagctggaga 10126583  T
Q  376 agaaacaag--------------atgga-aacattacagatcagttttggaatttgctttcaacttcaaactcaaatggagaaagcaatactgaaatgga 460  Q
    |||||||||              ||||| || |||||||||||||||  ||| |||||||||||| |||||||||||||||| | |||| ||||||||||    
T  10126584 agaaacaagctatcaattctgaaatggagaagattacagatcagtttcagaacttgctttcaactacaaactcaaatggagagatcaattctgaaatgga 10126683  T
Q  461 gaagatttgtaaaaggctgcaaacttttgtcc 492  Q
    ||||||||||||||||||||||||||||||||    
T  10126684 gaagatttgtaaaaggctgcaaacttttgtcc 10126715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 76 - 492
Target Start/End: Original strand, 10260054 - 10260485
Alignment:
Q  76 agatggctgcagctttgattggaagtgcatttctgtctgcttcagttcaaaccctaatggacaaactaacttcaactgagtttcgtgattatatcacaaa 175  Q
    ||||||||||||||||| ||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||| ||||||     
T  10260054 agatggctgcagctttggttggaggtgcgtttctgtctgcttctgttcaaaccttaatggacaaactaacttcacccgagtttcgtgattatttcacaag 10260153  T
Q  176 aaccaagttgaatgaatctttgatggaagaaatggaaacaacactacttgctcttgaggttgtgcttgatgatgcagaagagaagcagatccttcaaccc 275  Q
    |||  ||||||||||||| |||||| | || ||||||||||  |||||| ||||||||||||| || ||||||||||| ||||||||||||||  |||||    
T  10260154 aacagagttgaatgaatcattgatgtatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaaccc 10260253  T
Q  276 aaaatcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagaga 375  Q
    | ||||||||||||| | |||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| | ||||||||| | ||||    
T  10260254 agaatcaaacaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaataaaatcagctacaatgccctacgatgcaagctggaga 10260353  T
Q  376 agaaacaag--------------atgga-aacattacagatcagttttggaatttgctttcaacttcaaactcaaatggagaaagcaatactgaaatgga 460  Q
    |||||||||              ||||| || ||||||||||||||| |||| ||||||||||||||||||||||||| ||| | |||| |||||||| |    
T  10260354 agaaacaagctatcaattctgaaatggagaagattacagatcagtttcggaacttgctttcaacttcaaactcaaatgaagagatcaattctgaaatgca 10260453  T
Q  461 gaagatttgtaaaaggctgcaaacttttgtcc 492  Q
    ||||||||||||||||||||||||||||||||    
T  10260454 gaagatttgtaaaaggctgcaaacttttgtcc 10260485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 76 - 492
Target Start/End: Original strand, 10662882 - 10663313
Alignment:
Q  76 agatggctgcagctttgattggaagtgcatttctgtctgcttcagttcaaaccctaatggacaaactaacttcaactgagtttcgtgattatatcacaaa 175  Q
    ||||||||||||||||| ||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||     
T  10662882 agatggctgcagctttggttggaggtgcgtttctgtctgcttctgttcaaaccttaatggacaaactaacttcacctgagtttcgtgattatttcacaag 10662981  T
Q  176 aaccaagttgaatgaatctttgatggaagaaatggaaacaacactacttgctcttgaggttgtgcttgatgatgcagaagagaagcagatccttcaaccc 275  Q
    |||  ||||||||||||| |||||| | || ||||||||||  |||||| ||||||||||||| || ||||||||||| ||||||||||||||  |||||    
T  10662982 aacagagttgaatgaatcattgatgtatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaaccc 10663081  T
Q  276 aaaatcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagaga 375  Q
    | ||||||||||||| | |||||||| ||||||||||||| |||||| |||||||| |||||| ||||||||||| ||||| | ||||||||| | ||||    
T  10663082 agaatcaaacaatggttggatcggttaaaagatgcaatctatgatgcagaggatttactcaatcaaatcagctacaatgccctacgatgcaagctggaga 10663181  T
Q  376 agaaacaag--------------atgga-aacattacagatcagttttggaatttgctttcaacttcaaactcaaatggagaaagcaatactgaaatgga 460  Q
    |||||||||              ||||| || |||||||||||||||  ||| |||||||||||| |||||||||||| ||| | |||| ||||||||||    
T  10663182 agaaacaagctatcaattctgaaatggagaagattacagatcagtttcagaacttgctttcaactacaaactcaaatgaagagatcaattctgaaatgga 10663281  T
Q  461 gaagatttgtaaaaggctgcaaacttttgtcc 492  Q
    ||||||||||||||||||||||||||||||||    
T  10663282 gaagatttgtaaaaggctgcaaacttttgtcc 10663313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 76 - 492
Target Start/End: Original strand, 10183595 - 10184029
Alignment:
Q  76 agatggctgcagctttgattggaagtgcatttctgtctgcttcagttcaaaccctaatggacaaactaacttcaactgagtttcgtgattatatcacaaa 175  Q
    |||||||||||| |||||||||| ||||||||||| ||||| |  |||||||| ||| |||||||||| ||||||  |||||||||||||||||||||||    
T  10183595 agatggctgcagttttgattggaggtgcatttctggctgctactcttcaaaccttaacggacaaactagcttcaatcgagtttcgtgattatatcacaaa 10183694  T
Q  176 aaccaagttgaatgaatctttgatggaagaaatggaaacaacactacttgctcttgaggttgtgcttgatgatgcagaagagaagcagatccttcaaccc 275  Q
    |||  ||||||||||||| ||||| || || ||||||||||  |||||| ||||||||||||| || ||||||||||| ||||||||||||||  |||||    
T  10183695 aacagagttgaatgaatcattgatagatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaaccc 10183794  T
Q  276 aaaatcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagaga 375  Q
    | ||||||||||||| | |||||||| ||||||||||||| |||||||||||||||| ||||| ||||||||||| ||||| | ||||||||| | ||||    
T  10183795 agaatcaaacaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgttcaatcaaatcagctacaatgccctacgatgcaagatggaga 10183894  T
Q  376 agaaacaag--------------atgga----aacattacagatcagttttggaatttgctttcaacttcaaactcaaatggagaaagcaatactgaaat 457  Q
    |||||||||              |||||    || ||||||||||||||| |||| |||||||||||| |||||||||||| ||| | |||| |||||||    
T  10183895 agaaacaagcgatcaattctgaaatggatcagaatattacagatcagtttcggaacttgctttcaactacaaactcaaatgaagagatcaattctgaaat 10183994  T
Q  458 ggagaagatttgtaaaaggctgcaaacttttgtcc 492  Q
    | ||||||||| |||||||||||||||||||||||    
T  10183995 gaagaagatttataaaaggctgcaaacttttgtcc 10184029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 211 - 376
Target Start/End: Complemental strand, 10376411 - 10376246
Alignment:
Q  211 aaacaacactacttgctcttgaggttgtgcttgatgatgcagaagagaagcagatccttcaacccaaaatcaaacaatggcttgatcggttgaaagatgc 310  Q
    |||||||||| ||  ||||| | |||||||| ||||||||||| |||||||||||| |  | ||     |||| ||||||||||||   |||||||||||    
T  10376411 aaacaacactgctcactcttcaagttgtgctggatgatgcagaggagaagcagatcatcaatccttctgtcaagcaatggcttgatgacttgaaagatgc 10376312  T
Q  311 aatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaa 376  Q
     ||||||||||||||||| ||||||||||||||||| || ||| || ||||||||||||| |||||    
T  10376311 tatctttgatgctgaggacttgctcaatgaaatcagttatgattccctgcgatgcaaggtggagaa 10376246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 211 - 376
Target Start/End: Original strand, 10580104 - 10580269
Alignment:
Q  211 aaacaacactacttgctcttgaggttgtgcttgatgatgcagaagagaagcagatccttcaacccaaaatcaaacaatggcttgatcggttgaaagatgc 310  Q
    |||||||||| ||  ||||| | |||||||| ||||||||||| ||||||||||||  | | ||     |||||| ||||||||||   |||||||||||    
T  10580104 aaacaacactgctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaataatcctgctgtcaaactatggcttgatgacttgaaagatgc 10580203  T
Q  311 aatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaa 376  Q
     ||| ||||||||||||| ||||||||||||||||| |||||| || ||||||||||||| |||||    
T  10580204 tatcattgatgctgaggacttgctcaatgaaatcagttacgattccctgcgatgcaaggtggagaa 10580269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 376
Target Start/End: Original strand, 9838396 - 9838529
Alignment:
Q  243 gatgatgcagaagagaagcagatccttcaacccaaaatcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaa 342  Q
    ||||||||||| ||||||||||||    | ||| |  ||||||| |||||||||   ||||||||||   ||||||||||||||||||||||||| ||||    
T  9838396 gatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaa 9838495  T
Q  343 tcagctacgatgccttgcgatgcaaggtagagaa 376  Q
    |||| |||||| || ||||||||||||| |||||    
T  9838496 tcagttacgattccctgcgatgcaaggtggagaa 9838529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 376
Target Start/End: Original strand, 9849274 - 9849407
Alignment:
Q  243 gatgatgcagaagagaagcagatccttcaacccaaaatcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaa 342  Q
    ||||||||||| ||||||||||||    | ||| |  ||||||| |||||||||   ||||||||||   ||||||||||||||||||||||||| ||||    
T  9849274 gatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaa 9849373  T
Q  343 tcagctacgatgccttgcgatgcaaggtagagaa 376  Q
    |||| |||||| || ||||||||||||| |||||    
T  9849374 tcagttacgattccctgcgatgcaaggtggagaa 9849407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 412
Target Start/End: Original strand, 13289165 - 13289369
Alignment:
Q  208 tggaaacaacactacttgctcttgaggttgtgcttgatgatgcagaagagaagcagatccttcaacccaaaa-tcaaacaatggcttgatcggttgaaag 306  Q
    |||||||||||||||| |||||| |||| ||||| ||||||||||||  |||||| |||   |||| |     ||||||||||| | |||| | ||||||    
T  13289165 tggaaacaacactactcgctcttcaggtggtgctggatgatgcagaactgaagcaaatcac-caacactgctgtcaaacaatggttggatcagctgaaag 13289263  T
Q  307 atgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaagaaacaagatggaaacattacagatcagtt 406  Q
    ||||||||| |||||||||||||||||| ||  ||||||  |||||  || ||||||| ||||| ||||||||||||| || |||||| ||  ||||| |    
T  13289264 atgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtaaggtggagaagaaacaagctgaaaacatgactaatcaggt 13289363  T
Q  407 ttggaa 412  Q
    ||||||    
T  13289364 ttggaa 13289369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 280 - 412
Target Start/End: Original strand, 13332476 - 13332608
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaagaa 379  Q
    ||||||||||| | |||| | ||||||||||||||| |||||||||||||||||| ||  ||||||  |||||  || ||||||| ||||| ||||||||    
T  13332476 tcaaacaatggttggatcagctgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtaaggtggagaagaa 13332575  T
Q  380 acaagatggaaacattacagatcagttttggaa 412  Q
    ||||| || |||||| ||  ||||| |||||||    
T  13332576 acaagctgaaaacatgactaatcaggtttggaa 13332608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 280 - 412
Target Start/End: Original strand, 13343661 - 13343793
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaagaa 379  Q
    ||||||||||| | |||| | ||||||||||||||| |||||||||||||||||| ||  |||||| ||||||  || ||||||| | ||| ||||||||    
T  13343661 tcaaacaatggttggatcagctgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaactacgactccctgcgatgtacggtggagaagaa 13343760  T
Q  380 acaagatggaaacattacagatcagttttggaa 412  Q
    ||||| || |||||| ||  ||||| |||||||    
T  13343761 acaagctgaaaacatgactaatcaggtttggaa 13343793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 11131729 - 11131638
Alignment:
Q  74 aaagatggctgcagctttgattggaagtgcatttctgtctgcttcagttcaaaccctaatggacaaactaacttcaactgagtttcgtgatt 165  Q
    ||||||||| ||| ||||| ||||| |||||||||| |||||||| || |||||| |  | |||||||||||||||||||||||||||||||    
T  11131729 aaagatggcagcaactttggttggaggtgcatttctctctgcttctgtccaaaccatgcttgacaaactaacttcaactgagtttcgtgatt 11131638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 11160720 - 11160629
Alignment:
Q  74 aaagatggctgcagctttgattggaagtgcatttctgtctgcttcagttcaaaccctaatggacaaactaacttcaactgagtttcgtgatt 165  Q
    |||||| |||||| ||||| ||||| |||||||||| |||||||| ||||||||| || | ||||||||| ||||||| |||||||||||||    
T  11160720 aaagattgctgcaactttggttggaggtgcatttctatctgcttctgttcaaaccatacttgacaaactatcttcaaccgagtttcgtgatt 11160629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 10888672 - 10888763
Alignment:
Q  74 aaagatggctgcagctttgattggaagtgcatttctgtctgcttcagttcaaaccctaatggacaaactaacttcaactgagtttcgtgatt 165  Q
    ||||||||| ||| ||||| ||||| |||||||||| |||||||| || |||||| |  | ||| |||||||||||||||||||||||||||    
T  10888672 aaagatggcagcaactttggttggaggtgcatttctctctgcttctgtccaaaccatgcttgaccaactaacttcaactgagtttcgtgatt 10888763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 11149557 - 11149466
Alignment:
Q  74 aaagatggctgcagctttgattggaagtgcatttctgtctgcttcagttcaaaccctaatggacaaactaacttcaactgagtttcgtgatt 165  Q
    ||||||||||||| ||||| ||||| |||||||||| |||||||| || |||| | |  | ||| |||||||||||||||||||||||||||    
T  11149557 aaagatggctgcaactttggttggaggtgcatttctctctgcttctgtccaaagcatgcttgaccaactaacttcaactgagtttcgtgatt 11149466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 370
Target Start/End: Original strand, 8860858 - 8860948
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggt 370  Q
    |||||||||||||||||   |||||||||||  |||||||||||||||||||||||||  ||||||| || ||| | || |||||||||||    
T  8860858 tcaaacaatggcttgatgacttgaaagatgctctctttgatgctgaggatttgctcaaccaaatcagttatgattcattacgatgcaaggt 8860948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 376
Target Start/End: Complemental strand, 10434610 - 10434445
Alignment:
Q  211 aaacaacactacttgctcttgaggttgtgcttgatgatgcagaagagaagcagatccttcaacccaaaatcaaacaatggcttgatcggttgaaagatgc 310  Q
    |||||||||| ||  ||||| | |||||||| ||||||||||| ||||||||||||    ||||     |||||||||||||||||   |||||||||||    
T  10434610 aaacaacacttctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaaacctgctgtcaaacaatggcttgatgacttgaaagatgc 10434511  T
Q  311 aatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaa 376  Q
      |||||||||| ||||| |||||||| |||||||| || ||| || | |||| |||||| |||||    
T  10434510 tgtctttgatgccgaggacttgctcaacgaaatcagttatgattcccttcgatccaaggtggagaa 10434445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 412
Target Start/End: Original strand, 13160552 - 13160684
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaagaa 379  Q
    ||||||||||| | ||||   ||||||||||||||| |||||||||||||||||| ||  ||||||  |||||  || ||||||| | ||| ||||||||    
T  13160552 tcaaacaatggatggatcaactgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtacggtggagaagaa 13160651  T
Q  380 acaagatggaaacattacagatcagttttggaa 412  Q
    ||||| || |||||| ||  ||||| |||||||    
T  13160652 acaagctgaaaacatgactaatcaggtttggaa 13160684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 8860652 - 8860743
Alignment:
Q  74 aaagatggctgcagctttgattggaagtgcatttctgtctgcttcagttcaaaccctaatggacaaactaacttcaactgagtttcgtgatt 165  Q
    ||||||||| ||| ||||| ||||| |||||||||| |||||||| || |||||| |  | ||| ||||||||||||| |||||||||||||    
T  8860652 aaagatggcagcaactttggttggaggtgcatttctctctgcttctgtccaaaccatgcttgaccaactaacttcaaccgagtttcgtgatt 8860743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 366
Target Start/End: Complemental strand, 10364364 - 10364209
Alignment:
Q  211 aaacaacactacttgctcttgaggttgtgcttgatgatgcagaagagaagcagatccttcaacccaaaatcaaacaatggcttgatcggttgaaagatgc 310  Q
    |||||||||| ||  ||||| | |||||||| ||||| ||||||||||||||||||    | ||     ||||||||||||||||| | |||||||||||    
T  10364364 aaacaacactgctcactcttcaagttgtgctggatgacgcagaagagaagcagatcaacaatcctgctgtcaaacaatggcttgatggcttgaaagatgc 10364265  T
Q  311 aatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgca 366  Q
      |||||||||| |||||||||||  | |||||||| || ||| || |||||||||    
T  10364264 tgtctttgatgccgaggatttgcttcacgaaatcagttatgattccctgcgatgca 10364209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 376
Target Start/End: Original strand, 10076801 - 10076934
Alignment:
Q  243 gatgatgcagaagagaagcagatccttcaacccaaaatcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaa 342  Q
    ||||||||||| ||||||||||||    | ||| |  ||| ||| |||||||||   |||||||||||  |||||||||| ||||| |||||||| ||||    
T  10076801 gatgatgcagaggagaagcagatcagcaatccccatgtcagacagtggcttgataacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaa 10076900  T
Q  343 tcagctacgatgccttgcgatgcaaggtagagaa 376  Q
    |||| |||||| |  ||||||||||||| |||||    
T  10076901 tcagttacgattcactgcgatgcaaggtggagaa 10076934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 393
Target Start/End: Original strand, 11768806 - 11768919
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaagaa 379  Q
    |||||||||||||||||   |||||||| || |||||||||||||||||||| ||| || |||| || || ||  || | ||||||||| | ||||||||    
T  11768806 tcaaacaatggcttgatgacttgaaagacgctatctttgatgctgaggatttactcgatcaaataagttatgactccctccgatgcaagatggagaagaa 11768905  T
Q  380 acaagatggaaaca 393  Q
    ||||| | ||||||    
T  11768906 acaagctagaaaca 11768919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 10088362 - 10088458
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaa 376  Q
    |||||| ||||||||||   |||||||||||  |||||||||||||||| |||||||  |||||||| || ||| || | ||||||||||| |||||    
T  10088362 tcaaactatggcttgatgacttgaaagatgctgtctttgatgctgaggacttgctcagcgaaatcagttatgattcccttcgatgcaaggtggagaa 10088458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 11149351 - 11149255
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaa 376  Q
    |||||||||||||||||   ||||||||||| ||||||||||| ||||||||||| ||| |||| || || ||  |  ||||||||||||| |||||    
T  11149351 tcaaacaatggcttgatgacttgaaagatgctatctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggagaa 11149255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 10517060 - 10517114
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgct 334  Q
    |||||||||||||||||   ||||||||||||||||||||| |||| ||||||||    
T  10517060 tcaaacaatggcttgatgacttgaaagatgcaatctttgattctgaagatttgct 10517114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 370
Target Start/End: Original strand, 10526931 - 10527021
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggt 370  Q
    |||||||||||||| ||   |||||||||||||| ||||||||||| ||||||||  |   |||||||||||||||  |||| ||||||||    
T  10526931 tcaaacaatggcttcatgacttgaaagatgcaatatttgatgctgaagatttgcttgacttaatcagctacgatgctctgcggtgcaaggt 10527021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 10541546 - 10541600
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgct 334  Q
    |||| ||||||||||||   |||||||||||||||||||||||||| ||||||||    
T  10541546 tcaagcaatggcttgatgacttgaaagatgcaatctttgatgctgaagatttgct 10541600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 11782476 - 11782422
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgct 334  Q
    |||||||||||||||||   |||||||||||||| ||||||||||| ||||||||    
T  11782476 tcaaacaatggcttgatgacttgaaagatgcaatatttgatgctgaagatttgct 11782422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 10195245 - 10195341
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaa 376  Q
    |||||| ||||||||||   |||||||||||  |||||||||||||||| ||| |||  |||||||| || ||| || | ||||||||||| |||||    
T  10195245 tcaaactatggcttgatgacttgaaagatgctgtctttgatgctgaggacttgttcagcgaaatcagttatgattcccttcgatgcaaggtggagaa 10195341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 492
Target Start/End: Original strand, 10500304 - 10500340
Alignment:
Q  456 atggagaagatttgtaaaaggctgcaaacttttgtcc 492  Q
    ||||||||||| |||||||||||||||||||||||||    
T  10500304 atggagaagatgtgtaaaaggctgcaaacttttgtcc 10500340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 10888878 - 10888974
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaa 376  Q
    |||||||||||||||||   |||||||||||  |||||||||| ||||||||||| ||  |||| || || ||  | |||||||||||||| |||||    
T  10888878 tcaaacaatggcttgatgacttgaaagatgctgtctttgatgcggaggatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaa 10888974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 11160514 - 11160418
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaa 376  Q
    |||||||||||||||||   |||||||||||  |||||||||| ||||||||||| ||| |||| || || ||  |  ||||||||||||| |||||    
T  11160514 tcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggagaa 11160418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 492
Target Start/End: Complemental strand, 11782324 - 11782288
Alignment:
Q  456 atggagaagatttgtaaaaggctgcaaacttttgtcc 492  Q
    ||||||||||| |||||||||||||||||||||||||    
T  11782324 atggagaagatgtgtaaaaggctgcaaacttttgtcc 11782288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 412
Target Start/End: Original strand, 13170603 - 13170735
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaagaa 379  Q
    ||||||||||| | ||||   ||||||||||||||| |||||||||||||||||| ||  ||||||  |||||  || | ||||| ||||| |||||||     
T  13170603 tcaaacaatggatggatcaactgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctccgatgtaaggtggagaagat 13170702  T
Q  380 acaagatggaaacattacagatcagttttggaa 412  Q
    ||||  || |||||| ||  ||||| |||||||    
T  13170703 acaatctgaaaacatgactaatcaggtttggaa 13170735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 10500149 - 10500204
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctc 335  Q
    |||||||||||||||||   ||||||||  |||||||||||||||| |||||||||    
T  10500149 tcaaacaatggcttgatgacttgaaagacacaatctttgatgctgaagatttgctc 10500204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 11162821 - 11162767
Alignment:
Q  74 aaagatggctgcagctttgattggaagtgcatttctgtctgcttcagttcaaacc 128  Q
    ||||||||||||| ||||| ||||| |||||||||| ||||||||  ||||||||    
T  11162821 aaagatggctgcaactttggttggaggtgcatttctatctgcttctattcaaacc 11162767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 393
Target Start/End: Complemental strand, 11131503 - 11131410
Alignment:
Q  300 ttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaagaaacaagatggaaaca 393  Q
    ||||||||||| ||||||||||| ||||||||||| ||| |||| || || ||  |  ||||||||||||| ||||| | ||||| || |||||    
T  11131503 ttgaaagatgctatctttgatgcggaggatttgctgaatcaaattagttatgagtcactgcgatgcaaggtggagaatacacaagctgcaaaca 11131410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 9838228 - 9838324
Alignment:
Q  75 aagatggctgcagctttgattggaagtgcatttctgtctgcttcagttcaaaccctaatggacaaactaacttcaactgagtttcgtgattatatca 171  Q
    |||||||||||| || |||||||| | || ||||| |||||  | ||||| ||| || | || |||||  |||||||||||||||||||||| ||||    
T  9838228 aagatggctgcaactatgattggaggcgcttttctctctgcaactgttcagaccttagttgagaaacttgcttcaactgagtttcgtgattacatca 9838324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 9849106 - 9849202
Alignment:
Q  75 aagatggctgcagctttgattggaagtgcatttctgtctgcttcagttcaaaccctaatggacaaactaacttcaactgagtttcgtgattatatca 171  Q
    |||||||||||| || |||||||| | || ||||| |||||  | ||||| ||| || | || |||||  |||||||||||||||||||||| ||||    
T  9849106 aagatggctgcaactatgattggaggcgcttttctctctgcaactgttcagaccttagttgagaaacttgcttcaactgagtttcgtgattacatca 9849202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 10088227 - 10088271
Alignment:
Q  145 cttcaactgagtttcgtgattatatcacaaaaaccaagttgaatg 189  Q
    ||||||| |||||||||||||| |||| ||| |||||||||||||    
T  10088227 cttcaacagagtttcgtgattacatcaaaaacaccaagttgaatg 10088271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 10195110 - 10195154
Alignment:
Q  145 cttcaactgagtttcgtgattatatcacaaaaaccaagttgaatg 189  Q
    ||||||| |||||||||||||| |||| ||| |||||||||||||    
T  10195110 cttcaacagagtttcgtgattacatcaaaaacaccaagttgaatg 10195154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 492
Target Start/End: Original strand, 10517212 - 10517248
Alignment:
Q  456 atggagaagatttgtaaaaggctgcaaacttttgtcc 492  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  10517212 atggagaagatgtgtaaaagactgcaaacttttgtcc 10517248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 31680236 - 31680179
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaa 337  Q
    |||||||||||||||||  ||||||||||||||| | |||||||||||||||||||||    
T  31680236 tcaaacaatggcttgatgagttgaaagatgcaatatatgatgctgaggatttgctcaa 31680179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 50302 - 50206
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaa 376  Q
    |||||| ||||||||||   |||||||||||  |||||||||||||||| |||||||  |||||||| || ||| || ||||||||||||| |||||    
T  50302 tcaaactatggcttgatgacttgaaagatgctgtctttgatgctgaggacttgctcagcgaaatcagttatgattccctgcgatgcaaggtggagaa 50206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 412
Target Start/End: Complemental strand, 146436 - 146304
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaagaa 379  Q
    ||||||||||| | ||||   ||||||||||||||| |||||||||||||||||| ||  ||||||  |||||  || ||||||| | ||| ||||||||    
T  146436 tcaaacaatggatggatcaactgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtacggtggagaagaa 146337  T
Q  380 acaagatggaaacattacagatcagttttggaa 412  Q
    ||||| || |||||| ||  ||||| |||||||    
T  146336 acaagctgaaaacatgactaatcaggtttggaa 146304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 412
Target Start/End: Complemental strand, 136385 - 136253
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaagaa 379  Q
    ||||||||||| | ||||   ||||||||||||||| |||||||||||||||||| ||  ||||||  |||||  || | ||||| ||||| |||||||     
T  136385 tcaaacaatggatggatcaactgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaattacgactccctccgatgtaaggtggagaagat 136286  T
Q  380 acaagatggaaacattacagatcagttttggaa 412  Q
    ||||  || |||||| ||  ||||| |||||||    
T  136285 acaatctgaaaacatgactaatcaggtttggaa 136253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 26906469 - 26906565
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaa 376  Q
    |||||||||||||||||   ||||||||||| |||||||||| |||||| |||||||| ||||| || || ||| || |||||||||| || |||||    
T  26906469 tcaaacaatggcttgatgacttgaaagatgctatctttgatgttgaggacttgctcaacgaaattagttatgattccctgcgatgcaaagtcgagaa 26906565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 22827528 - 22827590
Alignment:
Q  103 catttctgtctgcttcagttcaaaccctaatggacaaactaacttcaactgagtttcgtgatt 165  Q
    ||||||| |||||||| | |||||| ||| | ||||||||||||||||| |||||| ||||||    
T  22827528 catttctctctgcttctgatcaaacactacttgacaaactaacttcaacagagtttggtgatt 22827590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 8438888 - 8438942
Alignment:
Q  111 tctgcttcagttcaaaccctaatggacaaactaacttcaactgagtttcgtgatt 165  Q
    |||||||| |||||||| ||| | ||||||||||||||||| |||||| ||||||    
T  8438888 tctgcttctgttcaaacactacttgacaaactaacttcaacagagtttggtgatt 8438942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 456 - 492
Target Start/End: Complemental strand, 17853265 - 17853229
Alignment:
Q  456 atggagaagatttgtaaaaggctgcaaacttttgtcc 492  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  17853265 atggagaagatgtgtaaaaggttgcaaacttttgtcc 17853229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 17853417 - 17853321
Alignment:
Q  280 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgctcaatgaaatcagctacgatgccttgcgatgcaaggtagagaa 376  Q
    |||||||||||||||||   |||||||| || ||||||||  | || ||| ||||| ||  ||||| ||||||||||||| | |||||||| |||||    
T  17853417 tcaaacaatggcttgatgatttgaaagacgctatctttgacacggaagatctgctcgatttaatcaactacgatgccttgaggtgcaaggtggagaa 17853321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 783 times since January 2019
Visitors: 2568