View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0302_1D_low_4 (Length: 437)
Name: NF0302_1D_low_4
Description: NF0302_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0302_1D_low_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 354
Target Start/End: Original strand, 5510983 - 5511320
Alignment:
| Q |
16 |
acatcaggagtatttagcaatattttgaccatcaggaatacattaaatgaggtatacatcaggaatatttggatacttatttaggagtatttagaatatt |
115 |
Q |
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| T |
5510983 |
acatcaggagtatttagcaatattttgaccatcaggaatacattaaatgaggtatacatcaggaatatttggatacttatt-aggagtatttagaatatt |
5511081 |
T |
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| Q |
116 |
ttgaccatattgtgtttttcatatagaataacattacttggtatgcaattaatttaaggggtttattctgtaacctttattaacaagatacttgggaatg |
215 |
Q |
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| T |
5511082 |
ttgaccatattgtgtttttcatatagaataacattacttggtaagcaattaatttaaggggttgattctgtaacctttattaacaagatacttgggaata |
5511181 |
T |
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| Q |
216 |
atatttgtgcttcagtgcttctaatgacttcaattcgttgctttaaaatgccgtaagtgttttgtggatattaaactactagtgtattttgacaagaaac |
315 |
Q |
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| T |
5511182 |
atatttgtgcttcagtgcttctaatgacttcaattcgttgctttaaaatgccgtaagtgttttgtggatattaaactactagtgtattttgacaagaaac |
5511281 |
T |
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| Q |
316 |
aagtgctttattgtttcatgcattatcctgttttatttc |
354 |
Q |
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| T |
5511282 |
aagtgctttattgtttcatgcattatcctgttttctttc |
5511320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 349 - 436
Target Start/End: Original strand, 5511355 - 5511442
Alignment:
| Q |
349 |
tatttctcgaatccatatcatatttgacatccacacgacactgacataaatgatcacattgtattatgtcatctttttaaattattat |
436 |
Q |
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| T |
5511355 |
tatttctcgaatccatatcatatttgatatccacacgacactgacataaatgatcacattgtattatgtcatctttttaaattattat |
5511442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 5510846 - 5510915
Alignment:
| Q |
114 |
ttttgaccatattgtgtttttcatatagaataacatta-cttggtatgcaattaatttaaggggtttattc |
183 |
Q |
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| T |
5510846 |
tttttaccatattatgtttttcatttagaataacattagcttgtcatgcaa-taatttaaggggtttattc |
5510915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 31026754 - 31026701
Alignment:
| Q |
384 |
cgacactgacataaatgatcacattgtattatgtcatctttttaaattattatc |
437 |
Q |
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| T |
31026754 |
cgacaccgacatatatgattacattgaattatgtcattttcttaaattattatc |
31026701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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