View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0302_1D_low_7 (Length: 380)

Name: NF0302_1D_low_7
Description: NF0302_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0302_1D_low_7
NF0302_1D_low_7
[»] chr5 (1 HSPs)
chr5 (17-358)||(38815437-38815781)
[»] chr7 (2 HSPs)
chr7 (56-153)||(39079876-39079973)
chr7 (48-105)||(21048692-21048749)
[»] chr1 (1 HSPs)
chr1 (56-153)||(19810946-19811043)
[»] chr8 (1 HSPs)
chr8 (99-153)||(25971173-25971227)
[»] chr6 (2 HSPs)
chr6 (58-104)||(2115530-2115576)
chr6 (98-151)||(18286713-18286766)
[»] chr2 (2 HSPs)
chr2 (74-120)||(33455859-33455905)
chr2 (65-110)||(7252252-7252297)
[»] chr3 (1 HSPs)
chr3 (65-110)||(1348868-1348913)
[»] scaffold1034 (1 HSPs)
scaffold1034 (56-131)||(819-895)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 358
Target Start/End: Complemental strand, 38815781 - 38815437
Alignment:
Q  17 taagtagtagtgcttgtaagtttggacagtgcgcacctgacaagccgattttgtagggttgaattagactcaacccaaactctaagatgatatcggagtc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815781 taagtagtagtgcttgtaagtttggacagtgcgcacctgacaagccgattttgtagggttgaattagactcaacccaaactctaagatgatatcggagtc 38815682  T
Q  117 tatcctagatctgttgttggactgcccgcattgtccatgcccctagcccaatttatgccaggttgtgaggca--gtgttggaaattttgccttgattgtg 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  38815681 tatcctagatctgttgttggactgcccgcattgtccatgcccctagtccaatttatgccaggttgtgaggcagggtgttggaaattttgccttgattgtg 38815582  T
Q  215 gtctgcccctagccatcttaaatttggcttttaaatttccttcattgcagcttcgagcaccttaattttgctgggtgtgagaggctgggttagtcctaca 314  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815581 gtcttcccctagccatcttaaatttggcttttaaatttccttcattgcagcttcgagcaccttaattttgctgggtgtgagaggctgggttagtcctaca 38815482  T
Q  315 cagcctagagatctaaatagccgtgaagggcctc-ttgtgtggtg 358  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  38815481 cagcctagagatctaaatagccgtgaagggcctctttgtgtggtg 38815437  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 39079973 - 39079876
Alignment:
Q  56 acaagccgattttgtagggttgaattagactcaacccaaactctaagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtcca 153  Q
    |||||||| ||||||| |||| | |||| | ||||||||| | |||||||  ||| ||| ||||||||||||||| ||||| || || ||||||||||    
T  39079973 acaagccggttttgtaaggtttagttaggcccaacccaaattttaagatggcatcagagcctatcctagatctgtcgttgggcttcctgcattgtcca 39079876  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 21048749 - 21048692
Alignment:
Q  48 cgcacctgacaagccgattttgtagggttgaattagactcaacccaaactctaagatg 105  Q
    ||||||| ||||||| ||||| || |||||| |||| ||||||||||| |||||||||    
T  21048749 cgcaccttacaagccaattttataaggttgagttaggctcaacccaaattctaagatg 21048692  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 19811043 - 19810946
Alignment:
Q  56 acaagccgattttgtagggttgaattagactcaacccaaactctaagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtcca 153  Q
    |||||||| ||||||| |||||| |||| |  |||||||| | ||||||| |||| ||| |||||||||||||||||  || || ||||||| |||||    
T  19811043 acaagccggttttgtaaggttgacttaggccgaacccaaattttaagatggtatcagagactatcctagatctgttgcagggcttcccgcatcgtcca 19810946  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 25971173 - 25971227
Alignment:
Q  99 taagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtcca 153  Q
    |||||||  ||| ||| |||||||||||||||||||||||| ||||||| |||||    
T  25971173 taagatggaatcagagcctatcctagatctgttgttggacttcccgcatcgtcca 25971227  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 2115530 - 2115576
Alignment:
Q  58 aagccgattttgtagggttgaattagactcaacccaaactctaagat 104  Q
    |||||| |||||||||||| |||||||||||||||||| | ||||||    
T  2115530 aagccggttttgtagggttcaattagactcaacccaaattttaagat 2115576  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 18286713 - 18286766
Alignment:
Q  98 ctaagatgatatcggagtctatcctagatctgttgttggactgcccgcattgtc 151  Q
    ||||||||||||| ||| ||||| |||||||||||| || || |||||||||||    
T  18286713 ctaagatgatatcagagcctatcgtagatctgttgtcgggcttcccgcattgtc 18286766  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 33455859 - 33455905
Alignment:
Q  74 gttgaattagactcaacccaaactctaagatgatatcggagtctatc 120  Q
    ||||| |||||||||||||||| ||||||||| |||| |||||||||    
T  33455859 gttgagttagactcaacccaaattctaagatggtatcagagtctatc 33455905  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 7252252 - 7252297
Alignment:
Q  65 ttttgtagggttgaattagactcaacccaaactctaagatgatatc 110  Q
    |||||||||||||| |||| ||||||||||| ||||||||| ||||    
T  7252252 ttttgtagggttgagttaggctcaacccaaattctaagatggtatc 7252297  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 1348913 - 1348868
Alignment:
Q  65 ttttgtagggttgaattagactcaacccaaactctaagatgatatc 110  Q
    ||||||| |||||| |||||||||||||||| | ||||||||||||    
T  1348913 ttttgtatggttgagttagactcaacccaaattttaagatgatatc 1348868  T

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Target: scaffold1034 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1034
Description:

Target: scaffold1034; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 819 - 895
Alignment:
Q  56 acaagccgattttgta-gggttgaattagactcaacccaaactctaagatgatatcggagtctatcctagatctgtt 131  Q
    |||||| ||||||||| |||||||||||| |  ||| |||| |||||||||||||| ||||||| |  |||||||||    
T  819 acaagctgattttgtaagggttgaattaggcctaactcaaattctaagatgatatcagagtctaactaagatctgtt 895  T

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