View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0302_low_1 (Length: 621)
Name: NF0302_low_1
Description: NF0302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0302_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 11 - 589
Target Start/End: Original strand, 30541476 - 30542055
Alignment:
| Q |
11 |
cacagacacaaacaccaatacatcgacacattccaaccaaagtcaatatataaaccacttctcattctttaaaattgctcatttcatctttcaaaccatt |
110 |
Q |
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| T |
30541476 |
cacagacacaaacaccaatacatcgacacattccaaccaaagtcaatatataaaccacttctcattctttaaaattgctcatttcatctttcaaaccatt |
30541575 |
T |
|
| Q |
111 |
cacttaaccaattgcaaacaaacaaatcaaactaacacttgctccaagaatacatgtccaaattagcgtttgcaacagaacataaaaactttccttcttt |
210 |
Q |
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| T |
30541576 |
cacttaaccaattgcaaacaaacaaatcaaactaacacttgctccaagaatacatgtccaaattagcgtttgcaacagaacataaaaactttccttcttt |
30541675 |
T |
|
| Q |
211 |
aaaaccttttcaaatgatagttgcattaaacatagtaaaagtgcataccctgctgatggaccaaaagtacacaaaaaaccaatcatgtgctttatcttag |
310 |
Q |
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| T |
30541676 |
aaaaccttttcaaatgatagttgcattaaacatagtaaaagtgcataccctgctgatggaccaaaagtacacaaaaaaccaatcatgtgctttatcttag |
30541775 |
T |
|
| Q |
311 |
taaagttaatttcttttgttttataattctctgaggaatcagaatgaagtgcaataagtgaagctgataaggttaagagaaacacagtgtttagtgtnnn |
410 |
Q |
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| T |
30541776 |
taaagttaatttcttttgttttataatcctctgaggaatcagaatgaagtgcaataagtgaagctgataaggttaagagaaacacagtgttcagtgtaaa |
30541875 |
T |
|
| Q |
411 |
nnnngtgagtttttgagaattgat-aaaaaatgaaaataaagcattgaaagcaagttgtgatgcacaaataagtgaataggttgaaacaggaagatataa |
509 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30541876 |
aaaagtgagtttttgagaattgataaaaaaatgaaaataaagcattgaaagcaagttgtgatgcacaaataagtgaataggttgaaacaggaagatataa |
30541975 |
T |
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| Q |
510 |
aagtcctattgagtacatgaaataatcacaagctaatagaatacctaaagagaagtaaattatgataagagtgtgaatag |
589 |
Q |
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| T |
30541976 |
aagtcctattgagtacatgaaataatcacaagctaatagaatacctaaagagaagtaaattatgataagagtgtgaatag |
30542055 |
T |
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