View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0302_low_2 (Length: 399)
Name: NF0302_low_2
Description: NF0302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0302_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 30 - 282
Target Start/End: Complemental strand, 7923200 - 7922948
Alignment:
| Q |
30 |
caatccactttaagtgtagaattattgatgcaattattagtggtaattagtaatcacacaatagcataattcttttgattattaatataaataagattag |
129 |
Q |
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| T |
7923200 |
caatccacttgaagtgtagaattattgatgcaattattagtggtaattagtaatcacacaatagcataattcttttgattattaatataaataagattag |
7923101 |
T |
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| Q |
130 |
tgattaacaaaaaccaacacggcctactgatgaggccctagtttctggttttgttaaattgatgaagcagtttacatgaagccggaattatgcgcctata |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7923100 |
tgattaacaaaaaccaacacggcctactgatgaggccctagtttctggttttgttaaattgatgaagcagtttacatgaagccagaattatgcgcctata |
7923001 |
T |
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| Q |
230 |
gtttgaacaaattgattcacatgttggttagatacactaacactgtgtttggt |
282 |
Q |
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| T |
7923000 |
gtttgaacaaattgattcacatgttggttagatacactaacactgtgtttggt |
7922948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 334 - 393
Target Start/End: Complemental strand, 7922896 - 7922837
Alignment:
| Q |
334 |
ctctgcaagtgcaatctgctcctatcagtttgcatggtagacattcaccagaataatcta |
393 |
Q |
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| T |
7922896 |
ctctgcaagtgcaatctgctcctatcagtttgcatggtagacattcaccagtattatcta |
7922837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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