View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0304-INSERTION-5 (Length: 523)
Name: NF0304-INSERTION-5
Description: NF0304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304-INSERTION-5 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 7 - 409
Target Start/End: Complemental strand, 46222638 - 46222235
Alignment:
| Q |
7 |
atgaagatactgaattccttttgctatatcaacaattatcgaaaaacgcgtcttccatatcgttaattcaaggcttttacgacgaaaaagagcgtcgtgg |
106 |
Q |
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| T |
46222638 |
atgaagatactgaattccttttgctatatcaacaattatcgaaaaacgcgtcttccatatcgttaattcaaggcttttacgacgaaaaagagcgtcgtgg |
46222539 |
T |
|
| Q |
107 |
aggttaccgtttttcatgagatcataaacgagaacaaaacgacggcgtttaggatcagaggagaaaccgatagcagggacaaggtgttcggattggagtc |
206 |
Q |
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| T |
46222538 |
aggttaccgtttttcatgagatcataaacgagaacaaaacgacggcgtttaggatcagaggagaaaccgatagcaggtacaaggtgttcggattggagtc |
46222439 |
T |
|
| Q |
207 |
tggaagcgaagaagagttcgttgtgatactcgcgttctccttggctgccgacgacgccgagggaggtagagttcatgagtttgacggcgatgggtttacc |
306 |
Q |
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| T |
46222438 |
tggaagcgaagaagagttcgttgtgatactcgcgttctccttggctgccgacgacgccgagggaggtggagttcatgagtttgacggcgatgggtttacc |
46222339 |
T |
|
| Q |
307 |
ggaggaagggagagtgccggagtagacaggacc-gaagccaccgtgaccgaggattgtggagaaggagtttgtggcgcggagtaggagggagtaggagaa |
405 |
Q |
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| T |
46222338 |
ggaggaagggagagtgccggagtagacaggaccggaagccaccgtgaccgaggattgtggagaaggagtttgtggcgcggagtaggagggagtaggagaa |
46222239 |
T |
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| Q |
406 |
aggg |
409 |
Q |
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| T |
46222238 |
aggg |
46222235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 407 - 523
Target Start/End: Complemental strand, 27713620 - 27713503
Alignment:
| Q |
407 |
ggggttgaagggtaggtcttggtta-gtgggatgtgttttggcgttcttttatggtgtttctcttacgtgttccgcctatatacgacatgtttgctttgt |
505 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |
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| T |
27713620 |
ggggttgaagggtaggtcttggttacgtgggatgtgttttggcgttcttttatggtgtttctcttacgtgttccgcctatatacgacgtctttgttttgt |
27713521 |
T |
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| Q |
506 |
agtttctgaattgtaggt |
523 |
Q |
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| T |
27713520 |
agtttctgaattgtaggt |
27713503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 406
Target Start/End: Original strand, 227976 - 228044
Alignment:
| Q |
338 |
ccgaagccaccgtgaccgaggattgtggagaaggagtttgtggcgcggagtaggagggagtaggagaaa |
406 |
Q |
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|||||||| ||||| |||||| |||||||||||||||||||||||| | || |||||||||||||| |
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| T |
227976 |
ccgaagccgccgtggccgaggggagtggagaaggagtttgtggcgcggcggagatgggagtaggagaaa |
228044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 513
Target Start/End: Complemental strand, 36275881 - 36275784
Alignment:
| Q |
417 |
ggtaggtcttggttag-tgggatgtgttttggcgttcttttatggtgtttctcttacgtgttccgcctatatacgacatgtttgctttgtagtttctg |
513 |
Q |
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|||||||||||||||| ||| ||||||||||||| |||| |||| ||||| || |||||||||||||||| || |||| ||||||||||||| |
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| T |
36275881 |
ggtaggtcttggttaggtggtgtgtgttttggcgtctttttttggtatttcttttgtatgttccgcctatatacaacgcctttgttttgtagtttctg |
36275784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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