View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0304-INSERTION-7 (Length: 598)
Name: NF0304-INSERTION-7
Description: NF0304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0304-INSERTION-7
[» ] chr1 (2 HSPs)
Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 250 - 598
Target Start/End: Complemental strand, 46223103 - 46222756
Alignment:
Q
250
aagctcttgagaatactcctccttccaccattctcttactggtcctctcttctcttttttcaaatcaccctttctctttccttcatccattgattcccac
349
Q
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
46223103
aagctcttgagaatactcctccttccaccattctcttactggtcttctcttctcttttttcaaatcaccctttctctttccttcatccattgattcccac
46223004
T
Q
350
cactccaatttcttcttcatcttacttttctctccctttccacttccacccaccaaatcatcattctttgttctttcttccttcacctcttttccaatcc
449
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
46223003
cactccaatttcttcttcatcttacttttctctccctttccacttccacccaccaaatcatcattctttgttctttcttccttcacctcttttccaatcc
46222904
T
Q
450
aatccatcacataatcccttcacacttccactcttcttcaatccaacaccaaccatctccctctcatattcctcaaagttagtattaacactctctgttt
549
Q
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
T
46222903
aatccatcacataat-ccttcacacttccactcttcttcaatccaccaccaaccatctccctctcatattcctcaaagctagtattaacactctctgttt
46222805
T
Q
550
cagcaccatcactctcaaactctacttttcttctataatcactgatttc
598
Q
||||||||||||||||||||||| |||||||||||||||||||||||||
T
46222804
cagcaccatcactctcaaactcttcttttcttctataatcactgatttc
46222756
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 46223336 - 46223151
Alignment:
Q
17
tgaatttctccactattacatgaatcataactattccaactcactctccttaattccccacttaaccatgaatcaccactacctcgttccttcctactac
116
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
46223336
tgaatttctccactattacatgaatcataactattccaactcactctccttaattccccacttaaccatgaatcaccactacctcgttccttcctactac
46223237
T
Q
117
ggtttttataactcattttcttcacatcactaccagcatcatgatcatgaacatgatctctctcccatttccaccagttatcacca
202
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
T
46223236
ggtttttataactcattttcttcacatcactaccagcatcatgatcatgaacatgatctctgtcccatttccaccaattatcacca
46223151
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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