View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0304_1D_high_3 (Length: 334)
Name: NF0304_1D_high_3
Description: NF0304_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304_1D_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 302
Target Start/End: Complemental strand, 18348580 - 18348283
Alignment:
| Q |
3 |
aggtttagggagggttgatgtatcatcggaggtggagagttggtagaggtgggcatgttacataatggttttctgactgtgtattaacatttggattatt |
102 |
Q |
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| T |
18348580 |
aggtttagggagggttgatttatcatcggaggcggagagttggtagaggtgggcatgttacataatggttttctgactgtgtattaacatttggattatt |
18348481 |
T |
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| Q |
103 |
tttgcttttaatttatgtttgggtcttgtgttgtaacatttgaatactggtgatactattttcaannnnnnnnnnnnnnnnngtttcatatgcttccatt |
202 |
Q |
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| T |
18348480 |
tttgcttttaatttatgtttgggtcttgtgttgtaacatttgaatactggtgatactattatcaa--tttttttgttgttttgtttcatatgctttcatt |
18348383 |
T |
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| Q |
203 |
acatttgtgctagcttttaatatgttttgatgcatgttgaaagcaatccgaattcgtcaatttgccggaaaaaagtggaaactaatgaacacaggttctg |
302 |
Q |
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| T |
18348382 |
acatttgtgctagcttttaatatgttttgatgcatgttgaaagcaatccaaattcgtcaatttgccggaaaaaagtgttaactaatgaacccaggttctg |
18348283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 40683070 - 40683131
Alignment:
| Q |
185 |
gtttcatatgcttccattacatttgtgctagcttttaatatgttttgatgcatgttgaaagcaatc |
250 |
Q |
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| T |
40683070 |
gtttcatgtgcttcaattacattt----tagctaataatttgttttgatgcatgttgaaagcaatc |
40683131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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