View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0304_1D_low_1 (Length: 1320)
Name: NF0304_1D_low_1
Description: NF0304_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304_1D_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 1173; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 1173; E-Value: 0
Query Start/End: Original strand, 16 - 1268
Target Start/End: Complemental strand, 23333847 - 23332595
Alignment:
| Q |
16 |
ggacatcacgaagttgaccgataaaattgtgtgccagaatgcagctgaagcagtactcccccaaagaggttgataagtttgttttatgtaattttttgct |
115 |
Q |
| |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23333847 |
ggacataacgaagttgaccgataaaattgtgtgccggaatgcagctgaagcagtactccccccaagaggttgataagtttgttttatgtaattttttgct |
23333748 |
T |
|
| Q |
116 |
gttttgatatattgtgtcatgatttaccaggaaaaatgtacacattgtcgttacctcaggaactgttgttcgtgttgctgatgagctttcccttcaagag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333747 |
gttttgatatattgtgtcatgatttaccaggaaaaatgtacacattgtcgttgcctcaggaactgttgttcgtgttgctgatgagctttcccttcaagag |
23333648 |
T |
|
| Q |
216 |
atgcgattgctgaatacatattatgcagagcttgagaccgcaactgtaagtgattttttatatgtcaactgctttctgatgaaacaatcattataatatg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23333647 |
atgcgattgctgaatacatattatgcagagcttgagaccgcaactgtaagtgattttttatatgtcaactgctttctgatggaacaatcattataatatg |
23333548 |
T |
|
| Q |
316 |
ctgaattacgttggacaaaatccctaattcaaatgatttcgttggcttgcttaatgtcgtcattacgaagatgcgcacgacagggcataagataaattgc |
415 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23333547 |
ctgacttacgttggacaaaatccctaattcaaatgatttcgttggcttgcttaatgtcgtcattacgaagatgcgcacgatggggcataagataaattgc |
23333448 |
T |
|
| Q |
416 |
gaacattttaggagtttgcctctagctatgtgtaatactcccaaaaagtataacaaatttgcaaccagtgtggtggattctttttggactgccgtatttt |
515 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23333447 |
gaacattttaggagtttgcctctagctatgtgtaatactcccaaaaggtataacaaatttgcaaccagtgtggtggattctttttggactgctgtatttt |
23333348 |
T |
|
| Q |
516 |
ttcttatggagtctttctatcttgaccattaaaattaagctgagcaccagattttaattaaccaacgtaaattttgcagcattaattaactcaaaaaggt |
615 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333347 |
ttcttatggagtctttctgtcttgaccattaaaattaagctgagcaccagattttaattaaccaacgtaaattttgcagcattaattaactcaaaaaggt |
23333248 |
T |
|
| Q |
616 |
ttgcgtggaaaatagatgtttgttcttctctattttgctggccacatgttgttttgaatattaggcgatggttttaatttggctacttttggaatgtaat |
715 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23333247 |
ttgcgtggaaaatagatgtttgttcttctctattttgctggccacatgttgttttgaatattaggcgatggttttaatttggctacttttggaaagtaat |
23333148 |
T |
|
| Q |
716 |
gctacgaagacttatttgtttcttggtgcattttctgaaagttatacaatacttacgctgatatttcttggttgtcaagttaggatcaagactgtcaatt |
815 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333147 |
gctatgaagacttatttgtttcttggtgcattttctgaaagttatacaatacttacgctgatatttcttggttgtcaagttaggatcaagactgtcaatt |
23333048 |
T |
|
| Q |
816 |
atcattcatgctatgtagttagtcggttcattagtgggcattgcactgttttggtatgttgattggaactaaccgtgtcatgtgtttgatgtgttggtca |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333047 |
atcattcatgctatgtagttagtcggttcatttgtgggcattgcactgttttggtatgttgattggaactaaccgtgtcatgtgtttgatgtgttggtca |
23332948 |
T |
|
| Q |
916 |
gccgaagacaaggttgccatcgtgtttcgccaaggaatatggtgtgcatgttgatgattatgtcatgttgcgtgatccaaacagaaacatgttcgaggtc |
1015 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23332947 |
gccgaagacaaggttgccatcgtgtttcgccaaggaatatggtttgcatgttgatgattatgtcatgttgcgtgatccaaacagaaacatgttcaaggtc |
23332848 |
T |
|
| Q |
1016 |
aaggtccacgtgaaaaatggcaaggtctatctgcgggatggttgggctgagctgaagggtttctataaggtagatcgtggtgcgtgggtcaccctgactt |
1115 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23332847 |
aaggtccacgtgaaaaatggcaaggtttatctgcgggatggttgggctgagctgaagggtttctataaggtagatcgtggtgcgtgggtcaccctgacgt |
23332748 |
T |
|
| Q |
1116 |
atgtacagccgaatcttctagatatgactatcgcagagagatcaggagtcgaaatcaactatcctaacaaatttcttcctcccatgtcgaaaatgattgt |
1215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23332747 |
atgtacagccgaatcttctagatatgactatcgcagagagatcaggagtcgaaatcaactatcctaacaaatttcttcctcccatgtcgaaaatgattgt |
23332648 |
T |
|
| Q |
1216 |
ccaacgtgagggtggatcggtcatgcgcttctatcgctcattcgtccacatat |
1268 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
23332647 |
cccacgtgagggtggatcggtcatgcgcttctatcgctcattcgtccatatat |
23332595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 947 - 1041
Target Start/End: Original strand, 10955074 - 10955166
Alignment:
| Q |
947 |
aaggaatatggtgtgcatgttgatgattatgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggt |
1041 |
Q |
| |
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|||||||||||| |||| |||||||| |||||||| |||||||||| |||| |||||||||||||| ||||||||| ||| || |||||||| |
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| T |
10955074 |
aaggaatatggtttgcacgttgatgactatgtcat--tgcgtgatcctaacaagaacatgttcgaggttaaggtccacaagaagaagggcaaggt |
10955166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1263 - 1305
Target Start/End: Complemental strand, 23322373 - 23322331
Alignment:
| Q |
1263 |
acatatgcgtttggattttacaacgattgtgtttggtgatgtc |
1305 |
Q |
| |
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||||||||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
23322373 |
acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc |
23322331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 1263 - 1305
Target Start/End: Complemental strand, 23332540 - 23332498
Alignment:
| Q |
1263 |
acatatgcgtttggattttacaacgattgtgtttggtgatgtc |
1305 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
23332540 |
acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc |
23332498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 974 - 1041
Target Start/End: Complemental strand, 2027759 - 2027692
Alignment:
| Q |
974 |
tatgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggt |
1041 |
Q |
| |
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|||||||| |||||||||||||||| |||||||| ||||| || || ||| ||||||||||||||| |
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| T |
2027759 |
tatgtcattttgcgtgatccaaacaagaacatgtttgaggttaaagttcacaagaaaaatggcaaggt |
2027692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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