View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0304_1D_low_10 (Length: 318)

Name: NF0304_1D_low_10
Description: NF0304_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0304_1D_low_10
NF0304_1D_low_10
[»] chr4 (14 HSPs)
chr4 (27-269)||(3816415-3816661)
chr4 (22-249)||(3956533-3956760)
chr4 (23-269)||(3808839-3809085)
chr4 (86-262)||(4024013-4024189)
chr4 (88-254)||(3934086-3934252)
chr4 (20-254)||(4001127-4001361)
chr4 (86-254)||(3985821-3985989)
chr4 (86-254)||(4217452-4217620)
chr4 (88-254)||(3920865-3921031)
chr4 (20-193)||(3800482-3800655)
chr4 (146-263)||(4008825-4008942)
chr4 (180-244)||(4017510-4017574)
chr4 (180-246)||(3964730-3964796)
chr4 (20-68)||(4009029-4009077)
[»] chr5 (1 HSPs)
chr5 (23-249)||(13396800-13397026)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 8e-95; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 27 - 269
Target Start/End: Complemental strand, 3816661 - 3816415
Alignment:
Q  27 tttgataagatgaccaacctgcggttttt-gtattttcttggtatggaaggtttt-gattg--tcttcctcaagggcttcaatcttttccacttggtata 122  Q
    ||||||||||||||||||||||||||||| |||||||  |||||| ||||||||| ||||   | |||||||||||||||||||||||||||||||||||    
T  3816661 tttgataagatgaccaacctgcggttttttgtattttggtggtatagaaggtttttgatttgtttttcctcaagggcttcaatcttttccacttggtata 3816562  T
Q  123 aaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatcttgttatattggacttgtcatatagtctatttgaaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| |||||||| | ||||    
T  3816561 aaatatcttcattggacatactgccctctaaaatcattcccagagaagttttctgcaaagaatcttgttatattggacttgtcagatagtctagtggaaa 3816462  T
Q  223 agctttggtgtggagtgcaggtaattggatatttatcttccaaatta 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3816461 agctttggtgtggagtgcaggtaattggatatttatcttccaaatta 3816415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 249
Target Start/End: Original strand, 3956533 - 3956760
Alignment:
Q  22 atgtatttgataagatgaccaacctgcggtttttgtattttcttggtatggaaggttttgattgtcttcctcaagggcttcaatcttttccacttggtat 121  Q
    ||||||||||||||||||||||||||| ||||||| |||||| ||  || || ||||| ||| || ||||| ||||| ||||||||||||||  || | |    
T  3956533 atgtatttgataagatgaccaacctgcagtttttggattttcgtgacatagatggtttggatcgtattcctgaagggattcaatcttttccaactgatct 3956632  T
Q  122 aaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatcttgttatattggacttgtcatatagtctatttgaa 221  Q
    ||||||||||||||||| ||  | ||||||||||||| || ||||||| |||||| ||||||||||||||||||||||| |||||  ||| ||| | |||    
T  3956633 aaaatatcttcattggatatgttaccctctaaaatcactctcagagaagttttctgcagagaatcttgttatattggacctgtcaggtagcctactggaa 3956732  T
Q  222 aagctttggtgtggagtgcaggtaattg 249  Q
    || |||||||||||||||||| ||||||    
T  3956733 aaactttggtgtggagtgcagataattg 3956760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 23 - 269
Target Start/End: Complemental strand, 3809085 - 3808839
Alignment:
Q  23 tgtatttgataagatgaccaacctgcggtttttgtattttcttggtatggaaggttttgattgtcttcctcaagggcttcaatcttttccacttggtata 122  Q
    ||||||||||||||||||||| || || ||||||||||||  || ||| ||  ||||  |||||||||||||| || ||||||||||||||  |  | ||    
T  3809085 tgtatttgataagatgaccaaacttcgatttttgtattttggtgatatagatagtttcaattgtcttcctcaaaggtttcaatcttttccaactaatcta 3808986  T
Q  123 aaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatcttgttatattggacttgtcatatagtctatttgaaa 222  Q
    | ||||||||||||||  || || ||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||   |||||  | | ||||    
T  3808985 agatatcttcattggatgtattgtcctctaaaatcattcccagagaacttttctgcagagaatcttgttatattgaacttgtatgatagtaaaatggaaa 3808886  T
Q  223 agctttggtgtggagtgcaggtaattggatatttatcttccaaatta 269  Q
    |||||||| ||||||||||||||||||||||  | ||||||||||||    
T  3808885 agctttggcgtggagtgcaggtaattggatacgtgtcttccaaatta 3808839  T

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Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 86 - 262
Target Start/End: Complemental strand, 4024189 - 4024013
Alignment:
Q  86 tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaat 185  Q
    ||||||||||||||||||||||||||||  || | ||| |||||||  |||||   | | |||||||||||||||||||||||| |||||| || |||||    
T  4024189 tcttcctcaagggcttcaatcttttccaactgatctaagatatctttcttggatgaattaccctctaaaatcattcccagagaagttttctgcaaagaat 4024090  T
Q  186 cttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatatttatcttc 262  Q
    ||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||| || |||||| |||||    
T  4024089 cttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaagtgaatatttctcttc 4024013  T

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Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 88 - 254
Target Start/End: Original strand, 3934086 - 3934252
Alignment:
Q  88 ttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatct 187  Q
    |||||||||||||| |||||||||||  |||| | | |||||||||||||  ||  | |||||||||||||||||||||||| |||||| ||||||||||    
T  3934086 ttcctcaagggcttgaatcttttccaactggtcttagatatcttcattgggtatgttaccctctaaaatcattcccagagaagttttctgcagagaatct 3934185  T
Q  188 tgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat 254  Q
    |||||||||||||||||    ||||| | | |||||||| ||||||||||| |||||||||| ||||    
T  3934186 tgttatattggacttgtatcttagtcgaatggaaaagctatggtgtggagtacaggtaattgaatat 3934252  T

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Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 4001361 - 4001127
Alignment:
Q  20 tcatgtatttgataagatgaccaacctgcggtttttgtattttcttggtatggaaggttttgattgtcttcctcaagggcttcaatcttttccacttggt 119  Q
    ||||||||||| |||||||||||||||||| | |||| ||||  ||||||   | | ||| ||   |||||||||||||||||||||||| |||  || |    
T  4001361 tcatgtatttgctaagatgaccaacctgcgatatttggatttcattggtaaatacgatttggaacttcttcctcaagggcttcaatctttcccaactgat 4001262  T
Q  120 ataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatcttgttatattggacttgtcatatagtctatttg 219  Q
     ||| |||| ||  ||||| | | | ||||||||||||||||||| |||| ||||||  | |||||||||||||||||||||| ||| |||||| | | |    
T  4001261 ctaagatatatttgttggatacattaccctctaaaatcattcccaaagaagttttctggaaagaatcttgttatattggacttttcacatagtcgagtgg 4001162  T
Q  220 aaaagctttggtgtggagtgcaggtaattggatat 254  Q
    |||| ||||||||||||||||||||||||| ||||    
T  4001161 aaaatctttggtgtggagtgcaggtaattgaatat 4001127  T

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Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 254
Target Start/End: Complemental strand, 3985989 - 3985821
Alignment:
Q  86 tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaat 185  Q
    ||||||||||||||||||| ||||||||  || | ||| |||||||||||||  | | | ||||||| | ||||| ||| |||| |||||| |||||||     
T  3985989 tcttcctcaagggcttcaaccttttccaactgatctaagatatcttcattgggtacattaccctctagagtcattgccaaagaagttttctgcagagaaa 3985890  T
Q  186 cttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat 254  Q
    |||||||||||||||||||| ||||| ||| | |||||||||||||||||||| |||||||||| ||||    
T  3985889 cttgttatattggacttgtcgtatagcctagtagaaaagctttggtgtggagtacaggtaattgaatat 3985821  T

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Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 254
Target Start/End: Complemental strand, 4217620 - 4217452
Alignment:
Q  86 tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaat 185  Q
    |||||||| |||||||||||||||||||  || | ||| |||||||| ||||  ||  | |||||||||||||||||||||||| |||||| ||||||||    
T  4217620 tcttcctcgagggcttcaatcttttccaaatgatctaagatatcttcgttgggtatgttaccctctaaaatcattcccagagaacttttctgcagagaat 4217521  T
Q  186 cttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat 254  Q
    |||||||||||| |||||   ||||||  | | |||||||||||||||||||| |||||||||| ||||    
T  4217520 cttgttatattgaacttgcgttatagtaaagtggaaaagctttggtgtggagtacaggtaattgaatat 4217452  T

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Target: chr4; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 88 - 254
Target Start/End: Original strand, 3920865 - 3921031
Alignment:
Q  88 ttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatct 187  Q
    |||||||||||||| |||||||||||  |||| ||| |||||||||||||| | | | |||||||||||||||| ||||||| |||| | | ||||||||    
T  3920865 ttcctcaagggcttgaatcttttccaactggtttaagatatcttcattggatagattaccctctaaaatcattctcagagaagttttttgctgagaatct 3920964  T
Q  188 tgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat 254  Q
    |||||||||||||||||    | ||| | | |||||||| ||||||||||| |||||||||| ||||    
T  3920965 tgttatattggacttgtatcttggtcgaatggaaaagctatggtgtggagtacaggtaattgaatat 3921031  T

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Target: chr4; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 3800655 - 3800482
Alignment:
Q  20 tcatgtatttgataagatgaccaacctgcggtttttgtattttcttggtatggaaggttttgattgtcttcctcaagggcttcaatcttttccacttggt 119  Q
    ||||||||||| ||||||||||||| |||| | |||| |||||| |||||   | | ||| ||   ||||||||||||||||||||||||||||  || |    
T  3800655 tcatgtatttgctaagatgaccaacttgcgatatttggattttcatggtaaatacgatttggaacttcttcctcaagggcttcaatcttttccaaatgat 3800556  T
Q  120 ataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatcttgttat 193  Q
     ||| ||||||||||||||   | | |||||||||||||||||||||||| |||||| || |||||||||||||    
T  3800555 ctaagatatcttcattggatgcattaccctctaaaatcattcccagagaagttttctgcaaagaatcttgttat 3800482  T

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Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 146 - 263
Target Start/End: Complemental strand, 4008942 - 4008825
Alignment:
Q  146 ccctctaaaatcattcccagagaatttttcttcagagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggta 245  Q
    ||||||||||||||| ||| |||| |||||| | ||||||||||||||||| |||||||||| ||| | | | ||||||||||||| ||||||| |||||    
T  4008942 ccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaagtagaaaagctttggtatggagtgaaggta 4008843  T
Q  246 attggatatttatcttcc 263  Q
    ||||  ||| ||||||||    
T  4008842 attgactatgtatcttcc 4008825  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 4017574 - 4017510
Alignment:
Q  180 gagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggt 244  Q
    ||||| || ||||||||||||||||||||||||| | |||||||||| |||  ||||||||||||    
T  4017574 gagaaactcgttatattggacttgtcatatagtcgagttgaaaagctctggcatggagtgcaggt 4017510  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 3964730 - 3964796
Alignment:
Q  180 gagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaa 246  Q
    ||||| || ||||||||||||||||||||||||| | ||||||| || |||  ||||||||||||||    
T  3964730 gagaaactcgttatattggacttgtcatatagtcgagttgaaaaactctggcatggagtgcaggtaa 3964796  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 4009077 - 4009029
Alignment:
Q  20 tcatgtatttgataagatgaccaacctgcggtttttgtattttcttggt 68  Q
    ||||||||||| |||||||||||||||||  |||||| |||||| ||||    
T  4009077 tcatgtatttgctaagatgaccaacctgctatttttggattttcatggt 4009029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 23 - 249
Target Start/End: Complemental strand, 13397026 - 13396800
Alignment:
Q  23 tgtatttgataagatgaccaacctgcggtttttgtattttcttggtatggaaggttttgattgtcttcctcaagggcttcaatcttttccacttggtata 122  Q
    |||||||||||||||||||||||||   ||||||||||||| || ||| || ||||| ||| ||||||||||||||||||||| |||||||  || | ||    
T  13397026 tgtatttgataagatgaccaacctgaaatttttgtattttcatgatatagacggtttggatcgtcttcctcaagggcttcaattttttccaactgatcta 13396927  T
Q  123 aaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatcttgttatattggacttgtcatatagtctatttgaaa 222  Q
    | ||||||| ||||||   | | |||||||||||||||||||||||| ||||||   || |||||||||||| ||| |||| ||||||| ||  | ||||    
T  13396926 agatatctttattggatgcattaccctctaaaatcattcccagagaagttttctgttgataatcttgttatactgggcttgccatatagccttgtagaaa 13396827  T
Q  223 agctttggtgtggagtgcaggtaattg 249  Q
    |||||||||||||||| ||||||||||    
T  13396826 agctttggtgtggagtacaggtaattg 13396800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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