View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0304_1D_low_13 (Length: 312)

Name: NF0304_1D_low_13
Description: NF0304_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0304_1D_low_13
NF0304_1D_low_13
[»] chr4 (28 HSPs)
chr4 (69-312)||(27651649-27651892)
chr4 (138-312)||(18935557-18935730)
chr4 (138-259)||(36194483-36194604)
chr4 (156-243)||(1621719-1621806)
chr4 (166-249)||(31891495-31891578)
chr4 (164-312)||(9713697-9713852)
chr4 (169-312)||(42032692-42032835)
chr4 (169-266)||(9643178-9643276)
chr4 (170-276)||(22063981-22064087)
chr4 (168-266)||(26091124-26091222)
chr4 (223-308)||(21223616-21223701)
chr4 (154-266)||(26633881-26633993)
chr4 (232-309)||(35348170-35348247)
chr4 (168-276)||(36204582-36204689)
chr4 (159-266)||(22300636-22300743)
chr4 (169-312)||(47320566-47320709)
chr4 (164-266)||(51888427-51888529)
chr4 (169-266)||(2520578-2520675)
chr4 (170-266)||(22039009-22039105)
chr4 (226-310)||(21231603-21231687)
chr4 (223-266)||(43510054-43510097)
chr4 (232-312)||(18139040-18139118)
chr4 (68-118)||(39592999-39593049)
chr4 (232-312)||(49126253-49126331)
chr4 (164-266)||(53810824-53810926)
chr4 (169-266)||(10496143-10496240)
chr4 (157-266)||(22610973-22611081)
chr4 (193-274)||(51535082-51535162)
[»] scaffold0888 (1 HSPs)
scaffold0888 (164-312)||(1839-1987)
[»] chr5 (15 HSPs)
chr5 (164-312)||(14211009-14211154)
chr5 (154-312)||(39567061-39567219)
chr5 (150-261)||(28541122-28541233)
chr5 (197-312)||(2979477-2979592)
chr5 (173-250)||(19103810-19103886)
chr5 (154-266)||(38597563-38597675)
chr5 (232-266)||(7930038-7930072)
chr5 (180-266)||(9113936-9114022)
chr5 (156-266)||(13006996-13007106)
chr5 (154-266)||(7035993-7036105)
chr5 (157-221)||(14664145-14664209)
chr5 (174-266)||(38007143-38007235)
chr5 (156-221)||(8985193-8985258)
chr5 (164-266)||(41630286-41630382)
chr5 (169-210)||(41749100-41749141)
[»] chr7 (20 HSPs)
chr7 (154-312)||(24351008-24351166)
chr7 (164-312)||(22742716-22742864)
chr7 (168-266)||(28476005-28476103)
chr7 (182-312)||(35132747-35132877)
chr7 (164-266)||(1749352-1749453)
chr7 (168-277)||(5078593-5078702)
chr7 (192-266)||(22087123-22087197)
chr7 (162-312)||(30756983-30757134)
chr7 (169-266)||(42978391-42978488)
chr7 (155-312)||(13797096-13797253)
chr7 (164-266)||(25067864-25067966)
chr7 (156-266)||(47590084-47590193)
chr7 (170-266)||(12141519-12141615)
chr7 (155-266)||(41554336-41554445)
chr7 (169-252)||(3224642-3224725)
chr7 (164-266)||(41553646-41553746)
chr7 (164-266)||(41553991-41554091)
chr7 (164-262)||(4529857-4529955)
chr7 (192-241)||(35665357-35665406)
chr7 (233-266)||(39228862-39228895)
[»] chr3 (21 HSPs)
chr3 (164-277)||(21290019-21290132)
chr3 (150-277)||(8914466-8914593)
chr3 (150-312)||(51303804-51303965)
chr3 (164-312)||(16235196-16235342)
chr3 (175-277)||(7546397-7546499)
chr3 (155-265)||(42460510-42460623)
chr3 (169-265)||(629118-629214)
chr3 (157-312)||(29921820-29921977)
chr3 (157-312)||(29970973-29971130)
chr3 (182-250)||(51923542-51923610)
chr3 (164-312)||(50194448-50194596)
chr3 (164-266)||(40487101-40487203)
chr3 (155-253)||(14859264-14859362)
chr3 (164-266)||(43016631-43016735)
chr3 (169-248)||(53808091-53808170)
chr3 (169-266)||(21534021-21534116)
chr3 (160-310)||(38142343-38142493)
chr3 (196-266)||(35175205-35175276)
chr3 (232-266)||(6954907-6954941)
chr3 (157-266)||(40556480-40556589)
chr3 (154-202)||(20988030-20988078)
[»] chr8 (17 HSPs)
chr8 (162-312)||(18890868-18891017)
chr8 (150-266)||(41896274-41896394)
chr8 (169-312)||(14585485-14585626)
chr8 (150-252)||(39655275-39655377)
chr8 (169-312)||(8980980-8981124)
chr8 (169-309)||(27110629-27110770)
chr8 (170-277)||(15344090-15344197)
chr8 (170-277)||(15433155-15433262)
chr8 (170-277)||(15524459-15524566)
chr8 (168-312)||(24099425-24099567)
chr8 (163-266)||(29617666-29617769)
chr8 (155-266)||(31013780-31013891)
chr8 (160-265)||(8867603-8867708)
chr8 (169-266)||(25191275-25191372)
chr8 (169-259)||(1236909-1236999)
chr8 (169-312)||(1239566-1239709)
chr8 (155-266)||(8412557-8412669)
[»] chr2 (24 HSPs)
chr2 (154-312)||(10237378-10237535)
chr2 (164-312)||(14955309-14955457)
chr2 (164-312)||(3308725-3308873)
chr2 (159-266)||(19597660-19597766)
chr2 (164-266)||(12648135-12648237)
chr2 (169-312)||(32448787-32448929)
chr2 (193-277)||(18107936-18108020)
chr2 (192-276)||(37994089-37994172)
chr2 (164-266)||(29574844-29574944)
chr2 (164-266)||(4098889-4098991)
chr2 (156-266)||(4778531-4778641)
chr2 (216-266)||(14423131-14423181)
chr2 (192-312)||(24461253-24461371)
chr2 (156-266)||(27097616-27097726)
chr2 (174-266)||(7678089-7678181)
chr2 (157-205)||(23933863-23933911)
chr2 (232-309)||(43397288-43397364)
chr2 (172-275)||(6436402-6436505)
chr2 (223-266)||(37876809-37876852)
chr2 (164-266)||(7646258-7646360)
chr2 (168-266)||(9169469-9169566)
chr2 (164-266)||(19029118-19029219)
chr2 (172-261)||(5428084-5428173)
chr2 (233-266)||(39311060-39311093)
[»] chr6 (12 HSPs)
chr6 (150-276)||(14801582-14801708)
chr6 (168-276)||(8102498-8102607)
chr6 (154-312)||(1523175-1523331)
chr6 (169-308)||(14800989-14801128)
chr6 (154-266)||(545793-545903)
chr6 (164-266)||(30493311-30493412)
chr6 (170-266)||(4010711-4010807)
chr6 (232-276)||(30776511-30776555)
chr6 (155-266)||(12170263-12170374)
chr6 (196-266)||(7976376-7976445)
chr6 (215-266)||(1933909-1933960)
chr6 (164-265)||(33053380-33053481)
[»] chr1 (16 HSPs)
chr1 (166-312)||(34413255-34413402)
chr1 (164-272)||(16161611-16161719)
chr1 (191-312)||(48749996-48750116)
chr1 (166-265)||(24012866-24012965)
chr1 (164-266)||(37720330-37720432)
chr1 (169-312)||(49626694-49626837)
chr1 (172-277)||(18939109-18939214)
chr1 (169-312)||(34528503-34528644)
chr1 (169-265)||(44543057-44543153)
chr1 (155-266)||(12634937-12635048)
chr1 (154-277)||(45789334-45789457)
chr1 (207-276)||(31692664-31692733)
chr1 (164-265)||(32679311-32679412)
chr1 (157-266)||(34878482-34878591)
chr1 (169-266)||(10776671-10776768)
chr1 (232-277)||(11462648-11462693)
[»] scaffold0009 (1 HSPs)
scaffold0009 (169-312)||(58244-58387)
[»] scaffold0064 (1 HSPs)
scaffold0064 (164-276)||(19238-19348)
[»] scaffold0603 (1 HSPs)
scaffold0603 (170-266)||(7500-7595)
[»] scaffold0017 (1 HSPs)
scaffold0017 (154-266)||(32959-33071)
[»] scaffold0445 (1 HSPs)
scaffold0445 (164-266)||(1120-1222)
[»] scaffold0026 (1 HSPs)
scaffold0026 (156-266)||(72075-72185)
[»] scaffold0088 (1 HSPs)
scaffold0088 (232-265)||(50630-50663)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 69 - 312
Target Start/End: Original strand, 27651649 - 27651892
Alignment:
Q  69 aatttagtaaactttagatggattaccaagataagaaaatgactaccaatnnnnnnntttggtgtaacttgtaaatgtgctaaacaatagccggtcctaa 168  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||        |||||||||||||||||| ||||||||||||||||  |||||    
T  27651649 aatttagtaaattttagatggattatcaagataagaaaatgactaccaataaaaaaaattggtgtaacttgtaaatatgctaaacaatagccgcccctaa 27651748  T
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacat 268  Q
    ||||||||||||||||| |||||||||||||||| || ||||||||||||||| ||||| || ||||||| ||||||||||||||||||||| |||||      
T  27651749 ttttttagtgagagaaattctgtcttctctctaaattttcttcctctttcactcatcgaggaggggtgatgttaggtcaatttttgacctaggatcaccc 27651848  T
Q  269 ctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
     ||||||||       |  |||||||||||||||||||||||||    
T  27651849 atctgcatcttttttcccatttctttcaatctaaataagtgatt 27651892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 138 - 312
Target Start/End: Original strand, 18935557 - 18935730
Alignment:
Q  138 tgtaaatgtgctaaacaatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtga 237  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| || ||||||    
T  18935557 tgtaaatgtgctaaacaatagccggccctaagtttttagtgagagaaactctgtcttctctctaagttttcttcctctttcgctcatcgaggaggggtga 18935656  T
Q  238 ttttaggtcaatttttgacctagaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    ||| |||||||||||||||||||||||||  |||||||||       | |||||||| ||||||||| |||||||    
T  18935657 tttaaggtcaatttttgacctagaatcac-cctctgcatcttttttcccctttcttttaatctaaattagtgatt 18935730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 138 - 259
Target Start/End: Original strand, 36194483 - 36194604
Alignment:
Q  138 tgtaaatgtgctaaacaatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtga 237  Q
    |||||||||| |||| ||||| ||| | |||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  36194483 tgtaaatgtgttaaataatagtcggccttaattttttagtgagagaaattttgtcttctctctaagttttcttcctctttcacttatcgaggatgggtga 36194582  T
Q  238 ttttaggtcaatttttgaccta 259  Q
    |||||| |||||||||||||||    
T  36194583 ttttagatcaatttttgaccta 36194604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 156 - 243
Target Start/End: Complemental strand, 1621806 - 1621719
Alignment:
Q  156 tagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttag 243  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || | ||||||||||    
T  1621806 tagccggccctaattttttagtgagagaaactctgtcttctctctaagttttcttcctctttcactcatcgaggaggcgtgattttag 1621719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 31891578 - 31891495
Alignment:
Q  166 taattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaat 249  Q
    ||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||| || ||||| |||||||||| |||||||    
T  31891578 taattttttagtgagtgaaactttgtcttctctctaagttttcttcctctttcactcattgaagaggggtgatttttggtcaat 31891495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 312
Target Start/End: Original strand, 9713697 - 9713852
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtc-------aatttttgac 256  Q
    |||| |||||||||||||||||||||  |||||||||||||| |||| |||||||||| ||||| || ||||||||||| |||         ||||| ||    
T  9713697 cctagttttttagtgagagaaactctaccttctctctaagttctctttctctttcactcatcgaggaggggtgattttatgtctttttttttttttttac 9713796  T
Q  257 ctagaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||||||||| ||||| ||||       | ||||||||||||||||||||||||||    
T  9713797 ctagaatcacttctctacatcttttttcccctttctttcaatctaaataagtgatt 9713852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 312
Target Start/End: Complemental strand, 42032835 - 42032692
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtca-atttttgacctagaatcaca 267  Q
    |||||||||||||||||| ||  |||||||||||||| |||| || ||||||| |||||||| | ||| |||||||| |  ||||||| ||||||||||     
T  42032835 ttttttagtgagagaaaccctaccttctctctaagttttctttct-tttcactcatcgaagaggagtggttttaggttatttttttgatctagaatcacc 42032737  T
Q  268 tctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    ||||| ||||       | |||||||||| |||||||||| ||||    
T  42032736 tctcttcatcttttatcccctttctttcattctaaataagcgatt 42032692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 9643178 - 9643276
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaaga-tgggtgattttaggtcaatttttgacctagaatcac 266  Q
    ||||||||||||||||||||   |||||||||||||| ||||  |||||  || ||||||||  ||||| ||||| |||| ||||||||||||||||||    
T  9643178 ttttttagtgagagaaactccaacttctctctaagttttctttatcttttgctcatcgaagagggggtggttttatgtcattttttgacctagaatcac 9643276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 22064087 - 22063981
Alignment:
Q  170 tttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacatc 269  Q
    ||||||||||||||||||    ||||||||||||||  ||| || ||||||| ||| | ||||  | ||||||||||| ||||||||||||||||||  |    
T  22064087 tttttagtgagagaaacttcaccttctctctaagttcgctttctatttcactcatcaaggatgactaattttaggtcattttttgacctagaatcacccc 22063988  T
Q  270 tctgcat 276  Q
    |||||||    
T  22063987 tctgcat 22063981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 26091222 - 26091124
Alignment:
Q  168 attttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    |||||||||||||||||||||   |||||||||||    |||| ||| |||| | ||||| |||| |||||||||||| | ||||||||||||||||||    
T  26091222 attttttagtgagagaaactccaacttctctctaaaccttctttctccttcattcatcgaggatgagtgattttaggttattttttgacctagaatcac 26091124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 308
Target Start/End: Original strand, 21223616 - 21223701
Alignment:
Q  223 atcgaagatgggtgattttaggtcaatttttgacctagaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagt 308  Q
    ||||||||||| ||||||||||||| ||||||| ||| |||||||||||| ||||       | |||||||||| |||||||||||    
T  21223616 atcgaagatggatgattttaggtcagtttttgatctaaaatcacatctctccatctttttccccctttctttcattctaaataagt 21223701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 26633993 - 26633881
Alignment:
Q  154 aatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaattttt 253  Q
    |||||||||||||| ||||||||||||||||||||   |||||||||||  | |||| ||  |||  | || || || ||||| | |||||||| |||||    
T  26633993 aatagccggtcctagttttttagtgagagaaactccaacttctctctaaactttctttcttcttcgttcattgaggaggggtggtcttaggtcatttttt 26633894  T
Q  254 gacctagaatcac 266  Q
    |||||||||||||    
T  26633893 gacctagaatcac 26633881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 35348170 - 35348247
Alignment:
Q  232 gggtgattttaggtcaatttttgacctagaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtg 309  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||||       |  ||||||||||||||||||||||    
T  35348170 gggtgattttaggtcattttttgacctagaatcacctctctacatcttttttcccttttctttcaatctaaataagtg 35348247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 276
Target Start/End: Complemental strand, 36204689 - 36204582
Alignment:
Q  168 attttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcaca 267  Q
    ||||||||||||||| |||||   |||||||||| ||| |||| |||||||| | ||| | ||||| || ||||||||| |||||| ||||||||||||     
T  36204689 attttttagtgagaggaactccaccttctctctaggttttctttctctttcaatcatcaaggatggatggttttaggtc-attttttacctagaatcacc 36204591  T
Q  268 tctctgcat 276  Q
     ||||||||    
T  36204590 cctctgcat 36204582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 266
Target Start/End: Original strand, 22300636 - 22300743
Alignment:
Q  159 ccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacct 258  Q
    |||| |||| |||||||| |||||||||||   ||||||||||| || | || ||||||||||  |||| || | ||| |||||||||| ||||||||||    
T  22300636 ccggccctagttttttagagagagaaactccaacttctctctaaattttatttctctttcactcgtcgaggaggagtggttttaggtcattttttgacct 22300735  T
Q  259 agaatcac 266  Q
    | ||||||    
T  22300736 aaaatcac 22300743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 312
Target Start/End: Complemental strand, 47320709 - 47320566
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacat 268  Q
    |||||||||||||||||||    ||||||| |||||| || | ||||||| || |||||  | ||||| |||||||||| | |||||| || |||||||     
T  47320709 ttttttagtgagagaaacttcaacttctctttaagttttccttctctttcgctcatcgagaaggggtggttttaggtcattctttgacttaaaatcacaa 47320610  T
Q  269 ctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||||||||       | ||||| ||| ||||||||||||||||    
T  47320609 ctctgcatcttttttcccctttcgttcgatctaaataagtgatt 47320566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 51888529 - 51888427
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||| ||||||| |||||||||||    ||| |||||| ||| |||| |||||||||| ||||| || ||||| |||||||||| |||||||| | ||||    
T  51888529 cctagttttttattgagagaaacttcaacttttctctacgttttctttctctttcactcatcgaggaggggtggttttaggtcattttttgacattgaat 51888430  T
Q  264 cac 266  Q
    |||    
T  51888429 cac 51888427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 2520578 - 2520675
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    |||| |||||||||||||||   |||||||||||  | |||| ||| |||  | ||||| || ||||| |||||||||| ||||||||||||||||||    
T  2520578 ttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcac 2520675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 22039105 - 22039009
Alignment:
Q  170 tttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    ||||| |||||||||||| |  ||| | || ||||| |||| |||||||||| |||||  | ||||| ||||||||||||||| || ||||||||||    
T  22039105 ttttttgtgagagaaactttaacttttttcaaagttttctttctctttcactcatcgagcaggggtggttttaggtcaattttggatctagaatcac 22039009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 21231687 - 21231603
Alignment:
Q  226 gaagatgggtgattttaggtcaatttttgacctagaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtga 310  Q
    |||||||| || |||||||||| ||||||| ||| |||||| ||||| ||||       |||||||||||| |||||||||||||    
T  21231687 gaagatggatggttttaggtcattttttgatctaaaatcacctctctccatctttttttctctttctttcattctaaataagtga 21231603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 43510054 - 43510097
Alignment:
Q  223 atcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    |||||||| ||||| |||||||||| ||||||||||||||||||    
T  43510054 atcgaagaagggtggttttaggtcattttttgacctagaatcac 43510097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 18139118 - 18139040
Alignment:
Q  232 gggtgattttaggtcaatttttgacctagaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||||||||||||| |||||||||||| |||||||| |||| ||||       |||| | |||||||||||||||||||||    
T  18139118 gggtgattttaggtaaatttttgacctggaatcacacctcttcatc--attttctctctatttcaatctaaataagtgatt 18139040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 39592999 - 39593049
Alignment:
Q  68 taatttagtaaactttagatggattaccaagataagaaaatgactaccaat 118  Q
    ||||||||||||  |||||||||||| |||||||| |||||||||| ||||    
T  39592999 taatttagtaaatattagatggattatcaagataaaaaaatgactatcaat 39593049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 49126331 - 49126253
Alignment:
Q  232 gggtgattttaggtcaatttttgacctagaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||||||||||||| |||||||||||| |||||||| |||| ||||       |||| | |||||||||||||||||||||    
T  49126331 gggtgattttaggtaaatttttgacctggaatcacacctcttcatc--attttctctctatttcaatctaaataagtgatt 49126253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 53810824 - 53810926
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||| |||| ||||| |||||||||   |||||||||||  | |||||||| |||  | ||||| || ||||| |||||||||| ||||||||||| |||    
T  53810824 cctagttttctagtgggagaaactccagcttctctctaaactttcttcctccttcgttcatcgaggaggggtggttttaggtcattttttgacctataat 53810923  T
Q  264 cac 266  Q
    |||    
T  53810924 cac 53810926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 10496143 - 10496240
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    |||| |||||||||||||||   ||||| |||||  | |||| ||| |||  | ||||| || | ||| |||||||||||||||||||||||||||||    
T  10496143 ttttctagtgagagaaactccaacttctttctaaactttcttactccttcgttcatcgaggaggtgtggttttaggtcaatttttgacctagaatcac 10496240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 22610973 - 22611081
Alignment:
Q  157 agccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgac 256  Q
    |||||| |||| |||||||||| |||||||||   |||||||||||  | |||| ||| |||  |  |||| || ||||| ||||||||| |||||||||    
T  22610973 agccggccctagttttttagtgggagaaactccaacttctctctaaactttctttctccttcgttcgtcgaggaggggtggttttaggtc-atttttgac 22611071  T
Q  257 ctagaatcac 266  Q
    ||||||||||    
T  22611072 ctagaatcac 22611081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 51535082 - 51535162
Alignment:
Q  193 ttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacatctctgc 274  Q
    ||||||||||||| |||| |||||||| | ||| |||| || || |||||  | |||||||||||||||||||| |||||||    
T  51535082 ttctctctaagttctctttctctttcaatcatcaaagagggatggttttaaat-aatttttgacctagaatcacctctctgc 51535162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 164 - 312
Target Start/End: Complemental strand, 1987 - 1839
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||    
T  1987 cctaattttttagtgagagaaactctgtcttctctctacgttttcttcctctttcacttatcgaggaggggtgatattaggtcaatttttgacctagaat 1888  T
Q  264 cacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    ||| ||||||||||       | ||||||||||||||||||||||||||    
T  1887 cacctctctgcatcttttttcccctttctttcaatctaaataagtgatt 1839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 164 - 312
Target Start/End: Original strand, 14211009 - 14211154
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  14211009 cctaattttttagtgagagaaactctgtcttctctctaagttttcttcctctttcactcatcgagga-gggtgattttaggtcaatttttgacctagaat 14211107  T
Q  264 cacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||  |||||||||       | ||||||||||||||||||||||||||    
T  14211108 cacccctctgcatc--tttttccctttctttcaatctaaataagtgatt 14211154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 154 - 312
Target Start/End: Original strand, 39567061 - 39567219
Alignment:
Q  154 aatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaattttt 253  Q
    ||||| ||| ||||||||||||||||||||||| | ||||||||| |||||| ||||||||||||||| ||||| || ||||||||||||||||||||||    
T  39567061 aatagtcggccctaattttttagtgagagaaacaccgtcttctctttaagttttcttcctctttcactcatcgaggaggggtgattttaggtcaattttt 39567160  T
Q  254 gacctagaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||||||||||||  |||||||||       | ||||||||||||||||||||||||||    
T  39567161 gacctagaatcacgcctctgcatctttttccccctttctttcaatctaaataagtgatt 39567219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 28541233 - 28541122
Alignment:
Q  150 aaacaatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaat 249  Q
    ||||||||| | | |||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| |  ||||||||||||||||||    
T  28541233 aaacaatagtctgccctatttttttagtgagagaaactctttcttctctctaagttttcttcctctttcactcatcgaggtggggtgattttaggtcaat 28541134  T
Q  250 ttttgacctaga 261  Q
    ||||||||||||    
T  28541133 ttttgacctaga 28541122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 197 - 312
Target Start/End: Complemental strand, 2979592 - 2979477
Alignment:
Q  197 ctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacatctctgcatcnnnnnnnctctttctttca 296  Q
    ||||||||| ||||||||||||||| ||||| || |||||||||||||||||||||||||||| ||||||  |||||||||       ||||||||||||    
T  2979592 ctctaagttttcttcctctttcactcatcgaggaggggtgattttaggtcaatttttgacctataatcacccctctgcatcttttttcctctttctttca 2979493  T
Q  297 atctaaataagtgatt 312  Q
    ||||||||||||||||    
T  2979492 atctaaataagtgatt 2979477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 19103886 - 19103810
Alignment:
Q  173 ttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatt 250  Q
    |||||||||||||||||||||||| | |||||| | ||||||||||||| ||||| ||  ||||||||||||||||||    
T  19103886 ttagtgagagaaactctgtcttcttt-taagttgttttcctctttcactcatcgaggagaggtgattttaggtcaatt 19103810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 38597563 - 38597675
Alignment:
Q  154 aatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaattttt 253  Q
    ||||||||| |||| |||| |||||||||||||||   |||||||||||  | |||| ||| |||  | ||||| || ||||| |||||||| | |||||    
T  38597563 aatagccggccctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggttatttttt 38597662  T
Q  254 gacctagaatcac 266  Q
    |||||||||||||    
T  38597663 gacctagaatcac 38597675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 7930038 - 7930072
Alignment:
Q  232 gggtgattttaggtcaatttttgacctagaatcac 266  Q
    |||||||||||||||||||||||||||||||||||    
T  7930038 gggtgattttaggtcaatttttgacctagaatcac 7930072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 9114022 - 9113936
Alignment:
Q  180 gagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    ||||||||||  |||||||||||  | |||| |||||||  | ||||| || |||||||||||||||| ||||| ||||||||||||    
T  9114022 gagaaactctaacttctctctaaactttctttctctttcgttcatcgaggaggggtgattttaggtcattttttaacctagaatcac 9113936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 13006996 - 13007106
Alignment:
Q  156 tagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttga 255  Q
    ||||||| |||| |||||||||| |||||||||   |||||||||||  | |||| ||| |||  | ||||| ||  |||| |||||||||| |||||||    
T  13006996 tagccggccctagttttttagtgggagaaactccaacttctctctaaactttctttctccttcgttcatcgaggagaggtggttttaggtcattttttga 13007095  T
Q  256 cctagaatcac 266  Q
    |||||||||||    
T  13007096 cctagaatcac 13007106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 7035993 - 7036105
Alignment:
Q  154 aatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaattttt 253  Q
    ||||||||| |||| |||| |||||||||||||||   |||||||||||  | |||| ||| |||| | ||| | |  ||||| |||||||||| |||||    
T  7035993 aatagccggccctagttttctagtgagagaaactcaaacttctctctaaactttctttctccttcattcatcaaggtggggtggttttaggtcatttttt 7036092  T
Q  254 gacctagaatcac 266  Q
    |||||| ||||||    
T  7036093 gacctaaaatcac 7036105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 14664145 - 14664209
Alignment:
Q  157 agccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcact 221  Q
    ||||| ||||| |||||||||||||||||||   |||||||||||| ||||||| || |||||||    
T  14664145 agccgatcctagttttttagtgagagaaacttcatcttctctctaaattatctttctttttcact 14664209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 38007143 - 38007235
Alignment:
Q  174 tagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    |||||||||||||||  ||||||||||||  | |||| ||| |||  | ||||| || ||||| |||||||||| |||||||||| |||||||    
T  38007143 tagtgagagaaactcaatcttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctcgaatcac 38007235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 8985258 - 8985193
Alignment:
Q  156 tagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcact 221  Q
    ||||||| ||||  |||||||||||||||||||   |||||||||||||| || | ||||||||||    
T  8985258 tagccggccctagctttttagtgagagaaactccaacttctctctaagttttcgttctctttcact 8985193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 41630286 - 41630382
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||||||||| |||||||||||||    |||||||||||| | |||| ||| |||    ||||||||| |||| ||||||||| ||||||||||||||||    
T  41630286 cctaatttttcagtgagagaaacttcaacttctctctaagctttctttctcattc----atcgaagat-ggtggttttaggtc-atttttgacctagaat 41630379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 41749100 - 41749141
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatctt 210  Q
    ||||||||||||||||||||| |||||| |||||||| ||||    
T  41749100 ttttttagtgagagaaactctatcttctttctaagttctctt 41749141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 154 - 312
Target Start/End: Complemental strand, 24351166 - 24351008
Alignment:
Q  154 aatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaattttt 253  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| ||||| || ||||||||||||||||||||||    
T  24351166 aatagccgaccctaattttttagtgagagaaactctgtcttctctttaagttttcttcctctctcactcatcgaggaggggtgattttaggtcaattttt 24351067  T
Q  254 gacctagaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||||||||||||  || ||||||       | ||||||||||||||||||||||||||    
T  24351066 gacctagaatcacccctgtgcatccttttttccctttctttcaatctaaataagtgatt 24351008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 164 - 312
Target Start/End: Original strand, 22742716 - 22742864
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| | ||||| || |||||||||||||||||||||| | |||||||    
T  22742716 cctaattttttagtgagagaaactatgtattctctctaagttttcttcctctttcattcatcgaggaggggtgattttaggtcaatttttaatctagaat 22742815  T
Q  264 cacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||  |||||||||       | ||||||||||||||||||||||||||    
T  22742816 cacccctctgcatcttttttcccctttctttcaatctaaataagtgatt 22742864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 168 - 266
Target Start/End: Original strand, 28476005 - 28476103
Alignment:
Q  168 attttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    |||||||||||||||||||||| | ||||||||||||| |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||    
T  28476005 attttttagtgagagaaactctttattctctctaagttttcttcctctttcacatatcgaggaggggtgattttaggtcaatttttgacctagaatcac 28476103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 182 - 312
Target Start/End: Original strand, 35132747 - 35132877
Alignment:
Q  182 gaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacatctctgcatcnnnn 281  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||  |||| ||||        
T  35132747 gaaactctgtcttctctctaagttttcttcctctttcactcatcgaggaggggtgattttaggtcaatttttgacctagaatcacccctctacatctttt 35132846  T
Q  282 nnnctctttctttcaatctaaataagtgatt 312  Q
       | |||||||| |||||||||||||||||    
T  35132847 ttcccctttcttttaatctaaataagtgatt 35132877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 1749453 - 1749352
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    ||||||||||| ||||||||  |||||||||||||||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  1749453 cctaatttttt-gtgagagaccctctgtcttctctctaagttttcttcctctttcactcatcgaggaggggtgattttaggtcaatttttgacctagaat 1749355  T
Q  264 cac 266  Q
    |||    
T  1749354 cac 1749352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 277
Target Start/End: Complemental strand, 5078702 - 5078593
Alignment:
Q  168 attttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcaca 267  Q
    ||||||||||||||||||||    |||||||||||||| ||||  ||||||||| ||  | || |||||||||||||||| ||||||||||||||||||     
T  5078702 attttttagtgagagaaacttcaacttctctctaagttctctttatctttcactcattaaggaagggtgattttaggtcattttttgacctagaatcacc 5078603  T
Q  268 tctctgcatc 277  Q
     |||||||||    
T  5078602 cctctgcatc 5078593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 22087123 - 22087197
Alignment:
Q  192 cttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    |||||||||||||| |||| ||| |||| |||||||||| || || |||| ||||| ||||||||||||||||||    
T  22087123 cttctctctaagttttctttctccttcatttatcgaagagggatggtttttggtcattttttgacctagaatcac 22087197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 312
Target Start/End: Complemental strand, 30757134 - 30756983
Alignment:
Q  162 gtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctaga 261  Q
    |||||| |||||||||| ||||||||    ||||||||||| || |||| |||||||  | ||||| || ||||| |||||||| | |||||||||||||    
T  30757134 gtcctagttttttagtgggagaaacttcaacttctctctaaattttctttctctttcgttcatcgaggaggggtggttttaggtaattttttgacctaga 30757035  T
Q  262 atcacatctctgcatcnnnnnnnctc-tttctttcaatctaaataagtgatt 312  Q
    |||||  |||| ||||       | | |||||||||||||||||||||||||    
T  30757034 atcacccctctacatcttttttccccttttctttcaatctaaataagtgatt 30756983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 42978391 - 42978488
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    |||| ||||||||||||||||  |||||||||||  | |||| ||| |||  | ||||| || ||||| |||||||||| ||||||||||||||||||    
T  42978391 ttttctagtgagagaaactctaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaatcac 42978488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 312
Target Start/End: Complemental strand, 13797253 - 13797096
Alignment:
Q  155 atagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttg 254  Q
    ||||||||||||| |||| ||||||||||||||    ||||||| ||| || |||| ||| |||  | ||||| ||||| || |||||||||| |||||     
T  13797253 atagccggtcctagttttctagtgagagaaacttcaacttctctttaaattttctttctcgttcgttcatcgaggatggatggttttaggtcatttttta 13797154  T
Q  255 acctagaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    ||||||||||||  |||| ||||       |  ||||||||||| |||||||||||||    
T  13797153 acctagaatcacccctctacatctttttccccttttctttcaatttaaataagtgatt 13797096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 25067864 - 25067966
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||| ||||||||||||||||||||   |||||| ||||||| ||||  ||||||| |||||||  ||| ||| ||||| ||||  ||||||||| ||||    
T  25067864 cctagttttttagtgagagaaactccaccttctcactaagttttctttttctttcatttatcgagaatgagtggttttatgtcatcttttgaccttgaat 25067963  T
Q  264 cac 266  Q
    |||    
T  25067964 cac 25067966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 47590084 - 47590193
Alignment:
Q  156 tagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttga 255  Q
    |||||||||| | ||||||||||||||||| ||   ||||||||||| || |||| ||| |||  | || || || ||||||||||||||| ||||||||    
T  47590084 tagccggtccaagttttttagtgagagaaattccaacttctctctaaattttctttctcattcgttcatagaggaggggtgattttaggtc-atttttga 47590182  T
Q  256 cctagaatcac 266  Q
     ||||||||||    
T  47590183 actagaatcac 47590193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 12141615 - 12141519
Alignment:
Q  170 tttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    ||||||| |||||||||||   |||||||||||  | |||| ||| |||  | |||||||| ||||| |||||||||| |||||||| |||||||||    
T  12141615 tttttagagagagaaactccaacttctctctaaactttctttctccttcgttcatcgaagaggggtggttttaggtcattttttgacatagaatcac 12141519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 41554445 - 41554336
Alignment:
Q  155 atagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttg 254  Q
    |||| ||| |||| |||||||||||||||||||||  ||| ||| ||| || | ||  ||| ||||| ||||||||||  || |||||||||| ||||||    
T  41554445 atagtcggccctagttttttagtgagagaaactctaacttttctttaaattctgtt--tctctcactcatcgaagatgaatggttttaggtcattttttg 41554348  T
Q  255 acctagaatcac 266  Q
    | ||||||||||    
T  41554347 atctagaatcac 41554336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 252
Target Start/End: Complemental strand, 3224725 - 3224642
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttt 252  Q
    ||||||||||||||||| ||   ||| | ||||| || |||| ||||||||||  ||||||||||||| |||||||||| ||||    
T  3224725 ttttttagtgagagaaattccaacttttttctaaattttctttctctttcactcttcgaagatgggtggttttaggtcattttt 3224642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 41553746 - 41553646
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||| |||||||||||||||||||||  ||| ||| ||| || | ||  ||| ||||| ||||||||||  || |||||||||| ||||||| |||||||    
T  41553746 cctagttttttagtgagagaaactctaacttttctttaaattctgtt--tctctcactcatcgaagatgaatggttttaggtcattttttgatctagaat 41553649  T
Q  264 cac 266  Q
    |||    
T  41553648 cac 41553646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 41554091 - 41553991
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||| |||||||||||||||||||||  ||| ||| ||| || | ||  ||| ||||| ||||||||||  || |||||||||| ||||||| |||||||    
T  41554091 cctagttttttagtgagagaaactctaacttttctttaaattctgtt--tctctcactcatcgaagatgaatggttttaggtcattttttgatctagaat 41553994  T
Q  264 cac 266  Q
    |||    
T  41553993 cac 41553991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 4529857 - 4529955
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaa 262  Q
    |||| |||| ||||||||||||||    |||||||||||||  |||| ||| |||| | ||| ||||  ||||||||||||||| |||||||| |||||    
T  4529857 cctagttttctagtgagagaaacttcaccttctctctaagtcttctttctccttcattcatcaaagagaggtgattttaggtcattttttgacatagaa 4529955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 35665406 - 35665357
Alignment:
Q  192 cttctctctaagttatcttcctctttcacttatcgaagatgggtgatttt 241  Q
    |||||||||||||| |||| || ||||| | |||||||||||||||||||    
T  35665406 cttctctctaagttttctttctttttcattcatcgaagatgggtgatttt 35665357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Original strand, 39228862 - 39228895
Alignment:
Q  233 ggtgattttaggtcaatttttgacctagaatcac 266  Q
    ||||||||||||||| ||||||||||||||||||    
T  39228862 ggtgattttaggtcattttttgacctagaatcac 39228895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 21290132 - 21290019
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||  |||||||||||||||||||||||||||||||    
T  21290132 cctaattttttagtgagagaaactctgtcttctctctaagttttcttcctctttcactcatggaggagaggtgattttaggtcaatttttgacctagaat 21290033  T
Q  264 cacatctctgcatc 277  Q
    |||  |||||||||    
T  21290032 cacccctctgcatc 21290019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 150 - 277
Target Start/End: Original strand, 8914466 - 8914593
Alignment:
Q  150 aaacaatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaat 249  Q
    ||||||||||| | |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| |||||  | ||||||||||||||||||    
T  8914466 aaacaatagcctgccctaattttttagtgagagaaattatgtcttctctctaagttttcttcctctttcactcatcgagaaggggtgattttaggtcaat 8914565  T
Q  250 ttttgacctagaatcacatctctgcatc 277  Q
    |||||||||||||| ||  |||||||||    
T  8914566 ttttgacctagaataacccctctgcatc 8914593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 150 - 312
Target Start/End: Complemental strand, 51303965 - 51303804
Alignment:
Q  150 aaacaatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaat 249  Q
    ||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| ||||| || || |||||||| ||||||    
T  51303965 aaacaatagtcggccctaattttttaatgagagaaactctgtcttctctctaagttttcttcctcttttactcatcgaggagggatgattttatgtcaat 51303866  T
Q  250 ttttgacctagaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||||||||||||||||  |||||||||       | |||| |||||||| ||||||||||||    
T  51303865 ttttgacctagaatcac-cctctgcatcttttttcccctttttttcaatccaaataagtgatt 51303804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 164 - 312
Target Start/End: Original strand, 16235196 - 16235342
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||||||||||||||||||| ||| |||||||| | |||||| ||||||||||||||| || || |||| ||||||||||||||||||||||||||||||    
T  16235196 cctaattttttagtgagagatactatgtcttcttt-taagttttcttcctctttcactcattgaggatgagtgattttaggtcaatttttgacctagaat 16235294  T
Q  264 cacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||   ||||||||       || ||| |||||||||||||||||||||    
T  16235295 cactcatctgcatcttttttcct-tttttttcaatctaaataagtgatt 16235342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 277
Target Start/End: Original strand, 7546397 - 7546499
Alignment:
Q  175 agtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacatctctgc 274  Q
    ||||||||||| ||  ||||||||||||||| |||| |||| ||||| ||||| || |||||||||||||||||||||||| ||||||||||  ||||||    
T  7546397 agtgagagaaattcaatcttctctctaagttttctttctctctcactcatcgaggaggggtgattttaggtcaatttttgatctagaatcacccctctgc 7546496  T
Q  275 atc 277  Q
    |||    
T  7546497 atc 7546499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 155 - 265
Target Start/End: Original strand, 42460510 - 42460623
Alignment:
Q  155 atagccggtcctaattttttagtgagagaaactctgtcttctctctaagtta---tcttcctctttcacttatcgaagatgggtgattttaggtcaattt 251  Q
    |||| |||||||||||||||||||||||||| | |||||||||| ||| |||   | || |||||||||||||||| || || ||||||||||||| |||    
T  42460510 atagtcggtcctaattttttagtgagagaaattatgtcttctctttaaattaatttttttctctttcacttatcgaggagggatgattttaggtcagttt 42460609  T
Q  252 ttgacctagaatca 265  Q
    |||||||| |||||    
T  42460610 ttgacctaaaatca 42460623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 265
Target Start/End: Complemental strand, 629214 - 629118
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatca 265  Q
    |||||||||||||||||||||  |||||||||||||| || | | |||||||| ||||| || ||||| |||||||||| | ||||||||| |||||    
T  629214 ttttttagtgagagaaactctaacttctctctaagttttccttccctttcactcatcgaggaggggtggttttaggtcattctttgacctaaaatca 629118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 312
Target Start/End: Original strand, 29921820 - 29921977
Alignment:
Q  157 agccggtcctaatttttt-agtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggt-gattttaggtcaatttttg 254  Q
    ||||||||||| |||||| ||| ||||| |||||  |||||||||||||| |||| |||||||| |  |||| || |||| | |||||||||| ||||||    
T  29921820 agccggtcctagtttttttagtaagagatactctaccttctctctaagttttctttctctttcattcgtcgaggaggggtggtttttaggtcattttttg 29921919  T
Q  255 acctagaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    | ||| |||||| ||||| ||||       | ||||||||||||||||||||||||||    
T  29921920 agctaaaatcacttctctccatcttttttcccctttctttcaatctaaataagtgatt 29921977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 312
Target Start/End: Original strand, 29970973 - 29971130
Alignment:
Q  157 agccggtcctaatttttt-agtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggt-gattttaggtcaatttttg 254  Q
    ||||||||||| |||||| ||| ||||| |||||  |||||||||||||| |||| |||||||| |  |||| || |||| | |||||||||| ||||||    
T  29970973 agccggtcctagtttttttagtaagagatactctaccttctctctaagttttctttctctttcattcgtcgaggaggggtggtttttaggtcattttttg 29971072  T
Q  255 acctagaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    | ||| |||||| ||||| ||||       | ||||||||||||||||||||||||||    
T  29971073 agctaaaatcacttctctccatcttttttcccctttctttcaatctaaataagtgatt 29971130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 51923542 - 51923610
Alignment:
Q  182 gaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatt 250  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| | || |||||||| ||||||||||    
T  51923542 gaaactctgtcttctctctaagttttcttcctctttcactcatcaaggaggggtgattctaggtcaatt 51923610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 312
Target Start/End: Complemental strand, 50194596 - 50194448
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||| ||||||||||||||||||||   |||||||||||||| || | ||||||||||  ||||  | | ||| |||||| ||| ||||||||||| |||    
T  50194596 cctagttttttagtgagagaaactccaacttctctctaagttttcgttctctttcactcgtcgagaaggagtggttttagatcattttttgacctaaaat 50194497  T
Q  264 cacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    ||| ||||||||||       |  | |||||||||||||||||||||||    
T  50194496 cacctctctgcatcctttttcccttctctttcaatctaaataagtgatt 50194448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 40487101 - 40487203
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    ||||||||| |||||||||||||||   |||||||||||  | |||| ||| |||  | ||||| || |||||||||||||||| |||||||||||||||    
T  40487101 cctaattttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtgattttaggtcattttttgacctagaat 40487200  T
Q  264 cac 266  Q
    |||    
T  40487201 cac 40487203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 253
Target Start/End: Original strand, 14859264 - 14859362
Alignment:
Q  155 atagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaattttt 253  Q
    |||| |||||||| |||||||| ||||||||||    |||||||||||||| || | || |||||||||| || || |||||||||||||||| |||||    
T  14859264 ataggcggtcctagttttttagcgagagaaacttcaacttctctctaagttttcattctttttcacttattgaggaggggtgattttaggtcatttttt 14859362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 43016631 - 43016735
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaat--ttttgacctaga 261  Q
    |||| |||| ||||||||||||||||  ||||||||||| || |||| |||||||  | ||||| || ||||| |||||||||| |  ||||||||||||    
T  43016631 cctagttttctagtgagagaaactctaacttctctctaaattttctttctctttcgttcatcgaggaagggtggttttaggtcagttcttttgacctaga 43016730  T
Q  262 atcac 266  Q
    |||||    
T  43016731 atcac 43016735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 53808170 - 53808091
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaa 248  Q
    ||||||||||||||||||||   |||||||||||||| || | ||||||| || ||||| || |||||||||||| ||||    
T  53808170 ttttttagtgagagaaactccaacttctctctaagttttccttctctttcgctcatcgaggaggggtgattttagatcaa 53808091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 21534116 - 21534021
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    |||||||||||||||||||||   ||||||||||  | |||| ||| |||  | ||||| |||||||| |||||||||  ||||||||||||||||||    
T  21534116 ttttttagtgagagaaactctaatttctctctaaactttctttctccttcgttaatcgaggatgggtggttttaggtc--tttttgacctagaatcac 21534021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 310
Target Start/End: Original strand, 38142343 - 38142493
Alignment:
Q  160 cggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgaccta 259  Q
    ||||| || ||||||||||||||||||||    |||| | |||||| |||| |||||||| | ||| |  ||| |||||||||| ||| |||||||||||    
T  38142343 cggtcttagttttttagtgagagaaactccacattctttttaagttttctttctctttcattcatcaagaatgagtgattttagttcattttttgaccta 38142442  T
Q  260 gaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtga 310  Q
     ||||||   ||||||||       | ||||||||||||| ||||||||||    
T  38142443 aaatcactcatctgcatctttttttcactttctttcaatcaaaataagtga 38142493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 35175205 - 35175276
Alignment:
Q  196 tctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttt-tgacctagaatcac 266  Q
    |||||||||| |||| ||||||||||  || |||| ||||| |||||||||| |||| ||||||||||||||    
T  35175205 tctctaagttttctttctctttcactcgtctaagaggggtgcttttaggtcatttttttgacctagaatcac 35175276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 6954941 - 6954907
Alignment:
Q  232 gggtgattttaggtcaatttttgacctagaatcac 266  Q
    |||||||||||||||| ||||||||||||||||||    
T  6954941 gggtgattttaggtcattttttgacctagaatcac 6954907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 40556480 - 40556589
Alignment:
Q  157 agccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgac 256  Q
    |||||| |||| |||| ||||| |||||||||   ||||| |||||  | |||| ||| |||  | ||||| || ||||| |||||||||| ||||||||    
T  40556480 agccggccctagttttctagtgggagaaactccaacttctttctaaactttctttctcattcgttcatcgaggaggggtggttttaggtcattttttgac 40556579  T
Q  257 ctagaatcac 266  Q
    ||||||||||    
T  40556580 ctagaatcac 40556589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 20988078 - 20988030
Alignment:
Q  154 aatagccggtcctaattttttagtgagagaaactctgtcttctctctaa 202  Q
    ||||||||| |||| ||||||||||||||||||||   |||||||||||    
T  20988078 aatagccggccctagttttttagtgagagaaactccaacttctctctaa 20988030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 162 - 312
Target Start/End: Complemental strand, 18891017 - 18890868
Alignment:
Q  162 gtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctaga 261  Q
    |||||||||||||||||||||||||| | |||||| | |||||| |||||||||||||||||||||  | ||||||||||||||||||||||||||||||    
T  18891017 gtcctaattttttagtgagagaaacttt-tcttctttttaagttttcttcctctttcacttatcgagaaggggtgattttaggtcaatttttgacctaga 18890919  T
Q  262 atcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||||   ||||||||       | ||||||||||||||||||||||||||    
T  18890918 atcactcatctgcatcttttttcccctttctttcaatctaaataagtgatt 18890868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 150 - 266
Target Start/End: Original strand, 41896274 - 41896394
Alignment:
Q  150 aaacaatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttc----ctctttcacttatcgaagatgggtgattttaggt 245  Q
    |||| ||||| || |||||||||||||||||||||||| ||| ||||||||||||| |||||    |||||||||| ||||| |||| ||||||||||||    
T  41896274 aaaccatagctggccctaattttttagtgagagaaactttgtattctctctaagttttcttccttcctctttcactcatcgaggatgagtgattttaggt 41896373  T
Q  246 caatttttgacctagaatcac 266  Q
    |||||||||||||||||||||    
T  41896374 caatttttgacctagaatcac 41896394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 169 - 312
Target Start/End: Original strand, 14585485 - 14585626
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacat 268  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||   |||||   |||||||||||||||      
T  14585485 tttttttgtgagagaaactctgtcttctctctaagttttcttcctctttcactcatcgaggatgggtgattt---gtcaaaaattgacctagaatcaccc 14585581  T
Q  269 ctctgcatcnnnnnnnctc-tttctttcaatctaaataagtgatt 312  Q
    |||||||||       ||| |||||||||||||||||||||||||    
T  14585582 ctctgcatctttttttctcttttctttcaatctaaataagtgatt 14585626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 252
Target Start/End: Original strand, 39655275 - 39655377
Alignment:
Q  150 aaacaatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaat 249  Q
    ||||||||| | | |||||||||| ||||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||  |||||||||||||||||    
T  39655275 aaacaatagtctgccctaatttttcagtgagagaaactctatcttctctctaagttttctttctctttcacttatcgaggaaaggtgattttaggtcaat 39655374  T
Q  250 ttt 252  Q
    |||    
T  39655375 ttt 39655377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 312
Target Start/End: Original strand, 8980980 - 8981124
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacat 268  Q
    ||||||||||||||||||||   |||||||||||||| || | ||| ||||||  |||| || ||||| |||||||||| ||||||||||| ||||||      
T  8980980 ttttttagtgagagaaactccaacttctctctaagttttcgttctcattcactcgtcgaggaggggtggttttaggtcattttttgacctaaaatcaccc 8981079  T
Q  269 ctctgcatcnnnnnnnctc-tttctttcaatctaaataagtgatt 312  Q
    || ||||||       | | |||||||||||||||||||||||||    
T  8981080 ctatgcatcctttttccccttttctttcaatctaaataagtgatt 8981124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 309
Target Start/End: Complemental strand, 27110770 - 27110629
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacat 268  Q
    |||| |||||||||||||||   |||||||||||  | |||| ||| |||| | |||||||||||||| |||||||||| ||||||| ||| |||||||     
T  27110770 ttttctagtgagagaaactccaacttctctctaaactttctttctccttcattcatcgaagatgggtggttttaggtcattttttgatctaaaatcacac 27110671  T
Q  269 ctctgcatcnnnnnnnctc-tttctttcaatctaaataagtg 309  Q
     ||| ||||       ||| ||||||||||||||||||||||    
T  27110670 atctacatcttttttactcttttctttcaatctaaataagtg 27110629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 15344090 - 15344197
Alignment:
Q  170 tttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacatc 269  Q
    |||||||||||||||||||   |||||||||||||| |  | |||||||||| ||||| || ||||| |||||||||| | ||||||||| ||| ||  |    
T  15344090 tttttagtgagagaaactccaacttctctctaagtttttcttctctttcactcatcgaggaggggtggttttaggtcattctttgacctaaaattacccc 15344189  T
Q  270 tctgcatc 277  Q
    ||||||||    
T  15344190 tctgcatc 15344197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 15433155 - 15433262
Alignment:
Q  170 tttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacatc 269  Q
    |||||||||||||||||||   |||||||||||||| |  | |||||||||| ||||| || ||||| |||||||||| | ||||||||| ||| ||  |    
T  15433155 tttttagtgagagaaactccaacttctctctaagtttttcttctctttcactcatcgaggaggggtggttttaggtcattctttgacctaaaattacccc 15433254  T
Q  270 tctgcatc 277  Q
    ||||||||    
T  15433255 tctgcatc 15433262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 15524459 - 15524566
Alignment:
Q  170 tttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacatc 269  Q
    |||||||||||||||||||   |||||||||||||| |  | |||||||||| ||||| || ||||| |||||||||| | ||||||||| ||| ||  |    
T  15524459 tttttagtgagagaaactccaacttctctctaagtttttcttctctttcactcatcgaggaggggtggttttaggtcattctttgacctaaaattacccc 15524558  T
Q  270 tctgcatc 277  Q
    ||||||||    
T  15524559 tctgcatc 15524566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 312
Target Start/End: Complemental strand, 24099567 - 24099425
Alignment:
Q  168 attttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcaca 267  Q
    ||||||||||||||||||||    |||||||||| ||| |||| |||||||| | |||||  | |||||  ||||||||| ||||||||||||||||||     
T  24099567 attttttagtgagagaaacttcaacttctctctaggttttctttctctttcaatcatcgagta-gggtggctttaggtca-tttttgacctagaatcacc 24099470  T
Q  268 tctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
     ||||||||        ||||||||||| || |||||||||||||    
T  24099469 cctctgcattttgtttcctctttctttcgatttaaataagtgatt 24099425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 266
Target Start/End: Complemental strand, 29617769 - 29617666
Alignment:
Q  163 tcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaa 262  Q
    ||||| ||||||||||||||||| |    ||||||||||| || | || |||||||||||||||||||   ||  |||||||||| ||||||||||| ||    
T  29617769 tcctagttttttagtgagagaaatttcaacttctctctaaattttgtttctctttcacttatcgaagagatgttgttttaggtcattttttgacctacaa 29617670  T
Q  263 tcac 266  Q
    ||||    
T  29617669 tcac 29617666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 31013891 - 31013780
Alignment:
Q  155 atagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttg 254  Q
    |||| ||| |||| |||| |||||||||||||||   |||||||||||  | |||| ||| |||  | ||||| || ||||| |||||||||| ||||||    
T  31013891 atagtcggccctagttttctagtgagagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttg 31013792  T
Q  255 acctagaatcac 266  Q
    ||||||||||||    
T  31013791 acctagaatcac 31013780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 265
Target Start/End: Original strand, 8867603 - 8867708
Alignment:
Q  160 cggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgaccta 259  Q
    |||||||| ||||||||| |||||||||     ||||||||||||| |||| ||||||||   |||||  ||| ||||||||| |||| ||||||| |||    
T  8867603 cggtcctagttttttagttagagaaactacacattctctctaagttttctttctctttcatccatcgagtatgagtgattttaagtcattttttgatcta 8867702  T
Q  260 gaatca 265  Q
    ||||||    
T  8867703 gaatca 8867708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 25191372 - 25191275
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    ||||||||||||||||||||   |||||||||||  | |||| ||| ||   | ||||| ||  ||||||||||||||| ||||||||||||||||||    
T  25191372 ttttttagtgagagaaactccaacttctctctaaactttctttctcctttgttcatcgaggagaggtgattttaggtcattttttgacctagaatcac 25191275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 1236999 - 1236909
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgaccta 259  Q
    |||||||||||||||||||    |||||||||||||| || | ||||||| || || || || ||||| |||||||||| | |||||||||    
T  1236999 ttttttagtgagagaaacttcaacttctctctaagttttccttctctttcgctcattgaggaggggtggttttaggtcattctttgaccta 1236909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 312
Target Start/End: Complemental strand, 1239709 - 1239566
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacat 268  Q
    ||||| |||||||||||||    |||||||||||||| || | ||||| | || ||||| || ||||| |||||||||  | ||||||||| ||||||      
T  1239709 tttttaagtgagagaaacttcaacttctctctaagttttccttctcttccgctcatcgaggaggggtggttttaggtccttctttgacctaaaatcaccc 1239610  T
Q  269 ctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||||||||       | ||||| ||| ||||||||||||||||    
T  1239609 ctctgcatcttttttcccctttcgttcgatctaaataagtgatt 1239566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 8412669 - 8412557
Alignment:
Q  155 atagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtca-attttt 253  Q
    |||| |||||||| |||| ||||||||||||||||  |||||||||||  | |||| ||| |||  | |||||  | ||||| ||||||||||  |||||    
T  8412669 atagtcggtcctagttttctagtgagagaaactctaacttctctctaaactttctttctcattcgttcatcgagtaggggtggttttaggtcattttttt 8412570  T
Q  254 gacctagaatcac 266  Q
     ||||||||||||    
T  8412569 tacctagaatcac 8412557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 154 - 312
Target Start/End: Complemental strand, 10237535 - 10237378
Alignment:
Q  154 aatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaattttt 253  Q
    ||||||| | |||||||||||||||||||||||| || ||||||| |||||| ||||||||||||||| |||||  |  |||||||||||||||||||||    
T  10237535 aatagcccgccctaattttttagtgagagaaactttg-cttctctttaagttttcttcctctttcactcatcgagtagaggtgattttaggtcaattttt 10237437  T
Q  254 gacctagaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||||||||||||  |||| ||||       | ||||||||||||||||||||||||||    
T  10237436 gacctagaatcacccctctacatcttttttcccctttctttcaatctaaataagtgatt 10237378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 164 - 312
Target Start/End: Original strand, 14955309 - 14955457
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||| ||||||||| ||| ||||||| ||||||||  ||||| ||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||    
T  14955309 cctagttttttagtaagataaactctatcttctcttaaagttttcttcctctttcactcatcgaggaggggtgattttaagtcaatttttgacctagaat 14955408  T
Q  264 cacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    ||   |||||||||       ||||||||||||||||||||||||||||    
T  14955409 catccctctgcatcttttttcctctttctttcaatctaaataagtgatt 14955457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 164 - 312
Target Start/End: Original strand, 3308725 - 3308873
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||||||||||| ||||| ||||| ||||||| ||||||||| | |||||||| ||||  |||| || ||||||||||||||||||||||||||||||||    
T  3308725 cctaattttttactgagaaaaactttgtcttccctctaagtttttttcctcttccactcgtcgaggaggggtgattttaggtcaatttttgacctagaat 3308824  T
Q  264 cacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||  || ||||||       | |||| |||||||||||||||||||||    
T  3308825 cacccctttgcatcttttttcccctttatttcaatctaaataagtgatt 3308873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 266
Target Start/End: Original strand, 19597660 - 19597766
Alignment:
Q  159 ccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacct 258  Q
    |||| |||| ||| ||||||||||||||||   ||| ||||||||||||||| ||||| |||| ||| |||| || ||||||||||| |  |||||||||    
T  19597660 ccggccctagtttattagtgagagaaactccaacttatctctaagttatctttctcttccactcatcaaaga-ggatgattttaggttatcttttgacct 19597758  T
Q  259 agaatcac 266  Q
    ||||||||    
T  19597759 agaatcac 19597766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 12648237 - 12648135
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||| ||||| ||||||||||||||   ||||||| |||||| |||| |||||| |||  | || || ||||| |||||||||| |||||||||||||||    
T  12648237 cctagtttttaagtgagagaaactccaacttctctttaagttttctttctcttttactcgttgaggaggggtggttttaggtcattttttgacctagaat 12648138  T
Q  264 cac 266  Q
    |||    
T  12648137 cac 12648135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 312
Target Start/End: Complemental strand, 32448929 - 32448787
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacat 268  Q
    |||||||||||||||||||||  ||||||| ||| || |  |  ||||||||| ||||| || ||||| |||||||||| | ||||||||| ||||||      
T  32448929 ttttttagtgagagaaactctaacttctctttaaatttttcttttctttcactcatcgaggaggggtggttttaggtcattatttgacctaaaatcaccc 32448830  T
Q  269 ctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||||||||       | ||||||||| ||||||||||||||||    
T  32448829 ctctgcatctttttccc-ctttctttcgatctaaataagtgatt 32448787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 18108020 - 18107936
Alignment:
Q  193 ttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacatctctgcatc 277  Q
    ||||||||||||| |||| |||||||| | || || ||  |||| |||||||||| |||||||||||||||||| ||| ||||||    
T  18108020 ttctctctaagttttctttctctttcattcattgaggaatggtggttttaggtcattttttgacctagaatcacctctttgcatc 18107936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 37994089 - 37994172
Alignment:
Q  192 cttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacatctctgcat 276  Q
    |||||||||| ||| |||| |||||||| | ||||| || ||||| |||||||||| ||||||||||||||||||  ||||||||    
T  37994089 cttctctctaggttttctttctctttcaatcatcgaggaagggtggttttaggtca-tttttgacctagaatcacccctctgcat 37994172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 29574944 - 29574844
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||| |||||||||||||||||||||  ||||| |  ||||| | || ||||||||||  |||| || ||||| |||||| ||| |||||||||||||||    
T  29574944 cctagttttttagtgagagaaactctaacttcttt--aagttttatttctctttcactcgtcgaggaggggtggttttagatcattttttgacctagaat 29574847  T
Q  264 cac 266  Q
    |||    
T  29574846 cac 29574844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 4098889 - 4098991
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||| |||||||||| |||||||||   |||||||||||  | |||| |||||||  | ||||| || |||||  ||||||||| |||||||||||||||    
T  4098889 cctagttttttagtgggagaaactccaacttctctctaaactttctttctctttccttcatcgaggaagggtggctttaggtcattttttgacctagaat 4098988  T
Q  264 cac 266  Q
    |||    
T  4098989 cac 4098991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 266
Target Start/End: Original strand, 4778531 - 4778641
Alignment:
Q  156 tagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttga 255  Q
    ||||||| |||| |||||||||| |||||||||   ||||| |||||  | |||| ||| |||  | ||||| || ||||| |||||||||| |||||||    
T  4778531 tagccggccctagttttttagtgggagaaactccaacttctttctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttga 4778630  T
Q  256 cctagaatcac 266  Q
    |||||||||||    
T  4778631 cctagaatcac 4778641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 14423131 - 14423181
Alignment:
Q  216 ttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    ||||||||| ||| ||| ||| |||||||||||||||||||||||||||||    
T  14423131 ttcacttattgaaaatgagtggttttaggtcaatttttgacctagaatcac 14423181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 312
Target Start/End: Original strand, 24461253 - 24461371
Alignment:
Q  192 cttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacatctctgcatcnnnnnnnctctttc 291  Q
    |||||||||||||| |  | |||||||||| ||  | || ||||| |||||||||| ||||||||||||||||||  |||||||||       ||||||     
T  24461253 cttctctctaagtttttattctctttcactcattaaggaggggtggttttaggtcattttttgacctagaatcactcctctgcatc-cgttttctcttt- 24461350  T
Q  292 tttcaatctaaataagtgatt 312  Q
    |||||||||||||||||||||    
T  24461351 tttcaatctaaataagtgatt 24461371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 266
Target Start/End: Complemental strand, 27097726 - 27097616
Alignment:
Q  156 tagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttga 255  Q
    ||||||| |||| |||| |||||  ||||||||   |||||||||||  | |||| ||| |||  | ||||| || |||||||||||||||| |||||||    
T  27097726 tagccggccctagttttctagtggaagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtgattttaggtcattttttga 27097627  T
Q  256 cctagaatcac 266  Q
    |||||||||||    
T  27097626 cctagaatcac 27097616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 7678181 - 7678089
Alignment:
Q  174 tagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    |||||||||||||||   |||||||||||  | |||| ||| |||  | ||||| || ||||| |||||||||| ||||||||||||||||||    
T  7678181 tagtgagagaaactccaacttctctctaaactttctttctccttcgttgatcgatgaggggtggttttaggtcattttttgacctagaatcac 7678089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 23933911 - 23933863
Alignment:
Q  157 agccggtcctaattttttagtgagagaaactctgtcttctctctaagtt 205  Q
    |||||||||||||||||||||||||| |||||   ||||||||||||||    
T  23933911 agccggtcctaattttttagtgagagtaactccaccttctctctaagtt 23933863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 309
Target Start/End: Complemental strand, 43397364 - 43397288
Alignment:
Q  232 gggtgattttaggtcaatttttgacctagaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtg 309  Q
    ||||| |||||||||| |||||||||||||||||| ||||| ||||       || ||||||||||||||||||||||    
T  43397364 gggtggttttaggtcattttttgacctagaatcacctctctacatctttttccct-tttctttcaatctaaataagtg 43397288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 6436402 - 6436505
Alignment:
Q  172 tttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacatctc 271  Q
    |||| ||||||||||| |  ||||||||||||||  | | || ||||| | ||  |||| |||||||||||||||| |||||||| |||||||||  |||    
T  6436402 tttaatgagagaaactttagcttctctctaagttgcccttctttttcaatcattaaagaggggtgattttaggtcattttttgacatagaatcacccctc 6436501  T
Q  272 tgca 275  Q
    ||||    
T  6436502 tgca 6436505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 266
Target Start/End: Complemental strand, 37876852 - 37876809
Alignment:
Q  223 atcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    ||||| || ||||| |||||||||||||||||||||||||||||    
T  37876852 atcgaggaggggtggttttaggtcaatttttgacctagaatcac 37876809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 7646258 - 7646360
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||| |||| ||||| |||||||||   |||||||||||  | |||| ||| |||  | ||||| || ||||| |||||||||| |||||||||||||||    
T  7646258 cctagttttctagtgggagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaat 7646357  T
Q  264 cac 266  Q
    |||    
T  7646358 cac 7646360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 9169566 - 9169469
Alignment:
Q  168 attttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    ||||| ||||| |||||||||   |||||||||||  | |||| ||| |||  ||||||| || ||||| ||||||||| |||||||||||||||||||    
T  9169566 attttctagtgggagaaactccaacttctctctaaactttctttctcattcgtttatcgaggaggggtggttttaggtc-atttttgacctagaatcac 9169469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 19029219 - 19029118
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||| |||| |||||| |||||||||   ||||||||||| | | || |||||||  | |||||||||||||| |||| | || ||||||||||||||||    
T  19029219 cctagttttatagtgacagaaactctaatttctctctaagctttttttctctttcgttcatcgaagatgggtggttttggatc-atttttgacctagaat 19029121  T
Q  264 cac 266  Q
    |||    
T  19029120 cac 19029118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 5428173 - 5428084
Alignment:
Q  172 tttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctaga 261  Q
    ||||| |||||||||||   ||||||||||| || |||| ||| |||  | ||||| || ||||| |||||||| |||||||||||||||    
T  5428173 tttagagagagaaactccaacttctctctaaattttctttctccttcgttcatcgaggaggggtggttttaggttaatttttgacctaga 5428084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 39311093 - 39311060
Alignment:
Q  233 ggtgattttaggtcaatttttgacctagaatcac 266  Q
    ||||||||||||||| ||||||||||||||||||    
T  39311093 ggtgattttaggtcattttttgacctagaatcac 39311060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 150 - 276
Target Start/End: Original strand, 14801582 - 14801708
Alignment:
Q  150 aaacaatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaat 249  Q
    ||||||||||| | ||| | |||||||||||||||| | ||||||||||||||||| ||||||||||||||| |||||  | ||||||||||||||||||    
T  14801582 aaacaatagcctgcccttaatttttagtgagagaaattatgtcttctctctaagttttcttcctctttcactcatcgagaaggggtgattttaggtcaat 14801681  T
Q  250 ttttgacctagaatcacatctctgcat 276  Q
    |||||||||||||| ||  ||||||||    
T  14801682 ttttgacctagaataacccctctgcat 14801708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 276
Target Start/End: Original strand, 8102498 - 8102607
Alignment:
Q  168 attttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttagg-tcaatttttgacctagaatcac 266  Q
    |||||||||||||||||||| | ||||||||||||||| ||||| ||||| || |||||| || ||||||||||||| | ||||||||||||||||||||    
T  8102498 attttttagtgagagaaactatttcttctctctaagttttcttcttctttaacatatcgaggaggggtgattttaggtttaatttttgacctagaatcac 8102597  T
Q  267 atctctgcat 276  Q
      ||||||||    
T  8102598 ccctctgcat 8102607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 154 - 312
Target Start/End: Original strand, 1523175 - 1523331
Alignment:
Q  154 aatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaattttt 253  Q
    ||||| ||| ||||||||| ||||||||||||||||   ||||||||||||| | || |||||||||  ||  | || ||||||||||||||||||||||    
T  1523175 aatagtcggccctaattttatagtgagagaaactctacattctctctaagttttatttctctttcacacatgaaggaggggtgattttaggtcaattttt 1523274  T
Q  254 gacctagaatcacatctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||||||||||||  ||||||||        || |||||||||||||||||||||||||    
T  1523275 gacctagaatcac-cctctgcatttttttctct-tttctttcaatctaaataagtgatt 1523331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 308
Target Start/End: Original strand, 14800989 - 14801128
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacat 268  Q
    ||||||||||| |||||||||||||| ||||||| || ||||| ||||||||| || || ||  ||||||||||||| ||||||||| ||||||||||      
T  14800989 ttttttagtgacagaaactctgtcttttctctaatttttcttcatctttcactcattgaggagaggtgattttaggttaatttttgatctagaatcaccc 14801088  T
Q  269 ctctgcatcnnnnnnnctctttctttcaatctaaataagt 308  Q
    ||||| ||        | ||||||||||||||||||||||    
T  14801089 ctctgtatattttttcccctttctttcaatctaaataagt 14801128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 545793 - 545903
Alignment:
Q  154 aatagccggtcctaatttttt-agtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttt 252  Q
    ||||||||| ||||||||||| || |||||||||| |||||| | |  ||||| ||||||||||||||| ||||| || ||||||||||||| | |||||    
T  545793 aatagccggccctaatttttttagggagagaaactttgtctttttt--aagttttcttcctctttcactcatcgaggaggggtgattttagg-ccatttt 545889  T
Q  253 tgacctagaatcac 266  Q
    ||||||||||||||    
T  545890 tgacctagaatcac 545903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 30493311 - 30493412
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||| ||||||||||||||||||||   | ||||| |||||| ||||  |||||||||  ||||||| ||||| |||| ||||| |||||||||||||||    
T  30493311 cctagttttttagtgagagaaactccaacctctctttaagttttctttttctttcactcgtcgaaga-gggtggttttcggtcattttttgacctagaat 30493409  T
Q  264 cac 266  Q
    |||    
T  30493410 cac 30493412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 266
Target Start/End: Complemental strand, 4010807 - 4010711
Alignment:
Q  170 tttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    ||||||||||||||||||   ||||||||||||||| |||| ||| || | |||| || || | |||| ||||| ||| ||||||||||||||||||    
T  4010807 tttttagtgagagaaacttcatcttctctctaagttttctttctcctttatttattgaggaggagtgactttagatcattttttgacctagaatcac 4010711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 30776511 - 30776555
Alignment:
Q  232 gggtgattttaggtcaatttttgacctagaatcacatctctgcat 276  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  30776511 gggtgattttaggtcaatttttgacctagaatcacccctctgcat 30776555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 266
Target Start/End: Original strand, 12170263 - 12170374
Alignment:
Q  155 atagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttg 254  Q
    |||||||| |||| |||| |||||||||||||||   ||||||||||   | |||| ||| |||  | ||||| || ||||| |||||||||| ||||||    
T  12170263 atagccggccctagttttctagtgagagaaactccaacttctctctagactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttg 12170362  T
Q  255 acctagaatcac 266  Q
    ||||||||||||    
T  12170363 acctagaatcac 12170374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 7976445 - 7976376
Alignment:
Q  196 tctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    |||||||||| |||| || ||||||| |||||  ||||||| |||||||||| ||||||||||||||||||    
T  7976445 tctctaagttttctttctttttcactcatcgagcatgggtggttttaggtca-tttttgacctagaatcac 7976376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 1933960 - 1933909
Alignment:
Q  215 tttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    ||||||| ||||| |||| |||||||||| ||| ||||||||||||||||||    
T  1933960 tttcactcatcgaggatgagtgattttagatcattttttgacctagaatcac 1933909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 265
Target Start/End: Complemental strand, 33053481 - 33053380
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||| |||| ||||| |||||||||   |||||||||||  | |||| ||| |||  | ||||| || ||||| |||||||||| |||||||||||||||    
T  33053481 cctagttttctagtgggagaaactccaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttgacctagaat 33053382  T
Q  264 ca 265  Q
    ||    
T  33053381 ca 33053380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 166 - 312
Target Start/End: Complemental strand, 34413402 - 34413255
Alignment:
Q  166 taattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatca 265  Q
    ||||||||||||||||||||||||| |||||||||||||| | || ||||||||||||||||  | |||||||||||||||||||||| | |||||||||    
T  34413402 taattttttagtgagagaaactctgccttctctctaagttttttttctctttcacttatcgagtaggggtgattttaggtcaattttttatctagaatca 34413303  T
Q  266 catctctgcatc-nnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |  |||||||||        | ||||||||||||||||||||||||||    
T  34413302 cccctctgcatctttttttcccctttctttcaatctaaataagtgatt 34413255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 16161611 - 16161719
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    ||||||||| |||||||||||||||||  |||||||||| || ||||||||||||||  ||||| || |||| |||||||||||||||||||||||||||    
T  16161611 cctaattttctagtgagagaaactctgcattctctctaaattttcttcctctttcacacatcgaggaggggtaattttaggtcaatttttgacctagaat 16161710  T
Q  264 cacatctct 272  Q
    ||| |||||    
T  16161711 cacctctct 16161719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 191 - 312
Target Start/End: Original strand, 48749996 - 48750116
Alignment:
Q  191 tcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacatctctgcatcnnnnnnnctcttt 290  Q
    ||||||||||||||| ||||||||||||||| ||||| || ||||||| ||||||||| ||||||||||||||||| ||  ||||||       | ||||    
T  48749996 tcttctctctaagttttcttcctctttcactcatcgaggaggggtgatattaggtcaaattttgacctagaatcac-tccttgcatcttttttccccttt 48750094  T
Q  291 ctttcaatctaaataagtgatt 312  Q
    ||||||||||||||||||||||    
T  48750095 ctttcaatctaaataagtgatt 48750116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 24012965 - 24012866
Alignment:
Q  166 taattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatca 265  Q
    ||||||||||||||||||||||     |||| |||||||| |||| |||||||||| ||||| ||| | |||||||| ||||||||||||||||||||||    
T  24012965 taattttttagtgagagaaacttcaaattctttctaagttctctttctctttcactcatcgacgatagatgattttatgtcaatttttgacctagaatca 24012866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 164 - 266
Target Start/End: Complemental strand, 37720432 - 37720330
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    ||||||| ||||| |||||||||||| | |||| |||||||| |||||||||||||| ||| || ||  |||||| |||||| |||||||||||| ||||    
T  37720432 cctaattctttagggagagaaactctctattctttctaagttttcttcctctttcacatatggaggagaggtgatcttaggttaatttttgaccttgaat 37720333  T
Q  264 cac 266  Q
    |||    
T  37720332 cac 37720330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 169 - 312
Target Start/End: Original strand, 49626694 - 49626837
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacat 268  Q
    |||||| |||||||||||||   |||||||||||||  || | |||||||||| ||||| || ||||| |||||||||| | ||||||||| ||||||      
T  49626694 tttttttgtgagagaaactccaacttctctctaagtgttccttctctttcactcatcgaggaggggtggttttaggtcattctttgacctaaaatcaccc 49626793  T
Q  269 ctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||||||||       | ||||||||| ||||||||||||||||    
T  49626794 ctctgcatcttttttcccctttctttctatctaaataagtgatt 49626837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 277
Target Start/End: Original strand, 18939109 - 18939214
Alignment:
Q  172 tttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacatctc 271  Q
    ||||||||||||||||    |||||||||||||| |||| ||| |||| | ||||| ||  |||| |||||||||| ||||||| |||||||||| ||||    
T  18939109 tttagtgagagaaacttcaccttctctctaagttttctttctccttcattaatcgaggagaggtggttttaggtcattttttgatctagaatcacctctc 18939208  T
Q  272 tgcatc 277  Q
    ||||||    
T  18939209 tgcatc 18939214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 312
Target Start/End: Original strand, 34528503 - 34528644
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacat 268  Q
    ||||||||||| ||| ||||   ||||| ||| |||| ||||  ||||||||| |||||||||| ||| ||||| |||| ||||||||||||||||||      
T  34528503 ttttttagtgaaagagactccaacttctgtcttagttttctttttctttcactcatcgaagatgagtggttttatgtcattttttgacctagaatcaccc 34528602  T
Q  269 ctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||||||||       | ||||||||| ||||||||||||||||    
T  34528603 ctctgcatc--tttttccctttctttcgatctaaataagtgatt 34528644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 265
Target Start/End: Original strand, 44543057 - 44543153
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatca 265  Q
    ||||||||||||||||||||   |||||||||||||| || | |||||||||| ||||| || ||||| |||||||| | | ||||||||| |||||    
T  44543057 ttttttagtgagagaaactccaacttctctctaagttttccttctctttcactcatcgaggaagggtgcttttaggttattctttgacctaaaatca 44543153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 266
Target Start/End: Original strand, 12634937 - 12635048
Alignment:
Q  155 atagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttg 254  Q
    |||| ||| |||| ||||||||||||||||||||   |||||||||| ||| | || ||||||||||  |||| |||| ||| |||||||||| ||| ||    
T  12634937 atagtcggccctagttttttagtgagagaaactcaaacttctctctatgttttttttctctttcactcgtcgaggatgtgtggttttaggtcattttctg 12635036  T
Q  255 acctagaatcac 266  Q
    ||||| ||||||    
T  12635037 acctataatcac 12635048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 277
Target Start/End: Original strand, 45789334 - 45789457
Alignment:
Q  154 aatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaattttt 253  Q
    ||||||||| | || |||||||||||||||||||||   |||||||||| || | || ||  |||| | ||||| ||| | || |||||||||| |||||    
T  45789334 aatagccggccttagttttttagtgagagaaactctacgttctctctaaattttatttctacttcattcatcgaggattgatggttttaggtcatttttt 45789433  T
Q  254 gacctagaatcacatctctgcatc 277  Q
    |||||||||||||  |||||||||    
T  45789434 gacctagaatcacccctctgcatc 45789457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 31692733 - 31692664
Alignment:
Q  207 tcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacatctctgcat 276  Q
    |||| |||||||||| ||||| |||| |||||||||||||| |||||||||| |||||||  ||||||||    
T  31692733 tctttctctttcactcatcgaggatgtgtgattttaggtcattttttgaccttgaatcacccctctgcat 31692664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 265
Target Start/End: Complemental strand, 32679412 - 32679311
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||| ||||||||||||||||| ||   ||| |||||||||| |||| ||||||||||  |||| || ||||| ||||| |||| |||||||| ||||||    
T  32679412 cctagttttttagtgagagaaattccaacttttctctaagttttctttctctttcactcgtcgaggaggggtggttttatgtcattttttgacatagaat 32679313  T
Q  264 ca 265  Q
    ||    
T  32679312 ca 32679311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 266
Target Start/End: Complemental strand, 34878591 - 34878482
Alignment:
Q  157 agccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgac 256  Q
    |||||| |||| |||| |||||||||||||||   ||||||| |||  | |||| |||||||  | ||||| || ||||| |||||||||| ||||||||    
T  34878591 agccggccctagttttctagtgagagaaactccaacttctctttaaactttctttctctttcgttcatcgaggaggggtggttttaggtcattttttgac 34878492  T
Q  257 ctagaatcac 266  Q
    ||||||||||    
T  34878491 ctagaatcac 34878482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 10776768 - 10776671
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    |||||||| |||||||||||    ||||||||||  | |||| ||| |||| | ||||| || ||||| |||||| ||| ||||||||||||||||||    
T  10776768 ttttttagggagagaaactccaatttctctctaaactttctttctccttcattcatcgaggaagggtggttttagatcattttttgacctagaatcac 10776671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 11462693 - 11462648
Alignment:
Q  232 gggtgattttaggtcaatttttgacctagaatcacatctctgcatc 277  Q
    |||||||||||||| | ||||||||||||||||||  |||||||||    
T  11462693 gggtgattttaggttattttttgacctagaatcacccctctgcatc 11462648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 312
Target Start/End: Complemental strand, 58387 - 58244
Alignment:
Q  169 ttttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcacat 268  Q
    ||||||||||||||||||||   |||||||||||||| || |  |||||||||  |||| || ||||| |||||||||| ||||||||||| ||||||      
T  58387 ttttttagtgagagaaactccaacttctctctaagttttcgttttctttcactcgtcgaggaggggtggttttaggtcattttttgacctaaaatcaccc 58288  T
Q  269 ctctgcatcnnnnnnnctctttctttcaatctaaataagtgatt 312  Q
    |||||||||       |  |||||||||||||||||||||||||    
T  58287 ctctgcatccttttttccttttctttcaatctaaataagtgatt 58244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 276
Target Start/End: Complemental strand, 19348 - 19238
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||||||||||||||||||||||||   ||||||||||| || |||| |||||||||| ||||| || ||||| ||||| |||  |||||||||||||||    
T  19348 cctaattttttagtgagagaaactccaacttctctctaa-ttttctttctctttcactcatcgaggaggggtggttttatgtc-gtttttgacctagaat 19251  T
Q  264 cacatctctgcat 276  Q
     ||  ||||||||    
T  19250 tacccctctgcat 19238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 7500 - 7595
Alignment:
Q  170 tttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaatcac 266  Q
    ||||||||||| ||||||| | |||||||||||||| |||| ||| || | | ||||| || || || |||||||||| ||||||||||||||||||    
T  7500 tttttagtgagggaaactccg-cttctctctaagttttctttctcctttattcatcgaggagggatggttttaggtcattttttgacctagaatcac 7595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 33071 - 32959
Alignment:
Q  154 aatagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaattttt 253  Q
    ||||||| | |||| |||| ||||||||||||||||  |||||||||||  | |||| ||  |||  ||||||| || | ||| |||||||||| |||||    
T  33071 aatagcccgccctagttttctagtgagagaaactctaacttctctctaaactttctttcttcttcgtttatcgaggaggagtggttttaggtcatttttt 32972  T
Q  254 gacctagaatcac 266  Q
    ||| |||||||||    
T  32971 gacatagaatcac 32959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 1120 - 1222
Alignment:
Q  164 cctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttgacctagaat 263  Q
    |||| |||||||||||| ||||||    ||||||||||| || |||| ||| |||  | ||||| ||  |||| |||||||||| |||||||||||||||    
T  1120 cctagttttttagtgagtgaaacttcaacttctctctaaattttctttctccttcgttcatcgaggagaggtggttttaggtcattttttgacctagaat 1219  T
Q  264 cac 266  Q
    |||    
T  1220 cac 1222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 266
Target Start/End: Complemental strand, 72185 - 72075
Alignment:
Q  156 tagccggtcctaattttttagtgagagaaactctgtcttctctctaagttatcttcctctttcacttatcgaagatgggtgattttaggtcaatttttga 255  Q
    ||||||| |||| |||| ||||| ||||||||    |||||||||||  | |||| ||| |||  | ||||| || ||||| |||||||||| |||||||    
T  72185 tagccggccctagttttctagtgggagaaacttcaacttctctctaaactttctttctccttcgttcatcgaggaggggtggttttaggtcattttttga 72086  T
Q  256 cctagaatcac 266  Q
    |||||||||||    
T  72085 cctagaatcac 72075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 50630 - 50663
Alignment:
Q  232 gggtgattttaggtcaatttttgacctagaatca 265  Q
    |||||||||||||||| |||||||||||||||||    
T  50630 gggtgattttaggtcactttttgacctagaatca 50663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1249 times since January 2019
Visitors: 2574