View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0304_1D_low_17 (Length: 267)
Name: NF0304_1D_low_17
Description: NF0304_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304_1D_low_17 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 46239893 - 46240148
Alignment:
| Q |
12 |
ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat |
111 |
Q |
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| T |
46239893 |
ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagctaaacagatagctcagaaaattgttgagggtgat |
46239992 |
T |
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| Q |
112 |
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccag |
211 |
Q |
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| T |
46239993 |
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaatagtgtgagtatcaatgttgataggccagatccag |
46240092 |
T |
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| Q |
212 |
gattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaaggg |
267 |
Q |
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| T |
46240093 |
gattacaacccaggtttggatctttttacttttgttttgatggttgcaaaaaaggg |
46240148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 23541295 - 23541541
Alignment:
| Q |
20 |
tggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgatgctgattg |
119 |
Q |
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| T |
23541295 |
tggatgacatgaggacaaaccatgcagtgggtattacaatgggtagggcttggaaggcaaaacagattgctcagagtattgttgatggtgatgctgatag |
23541394 |
T |
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| Q |
120 |
tcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccaggattacaa |
219 |
Q |
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| T |
23541395 |
gcaatatgccatgatttggaggtatgctgcagaacttaaaagggtgaatgctggaaataatgtgaagataaatgtggatagaccaaccccatcaatccaa |
23541494 |
T |
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| Q |
220 |
cccaggtttggatctttttacttttgttttgatggctgcaaaaaagg |
266 |
Q |
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| T |
23541495 |
cccaggtttggttctttctacttttgttttgatggctgtaagaaagg |
23541541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 267
Target Start/End: Complemental strand, 3437574 - 3437331
Alignment:
| Q |
12 |
ggacatcatggatgacatgaggacgaatcatgcagtgggtatcaccaaaggtagggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat |
111 |
Q |
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| T |
3437574 |
ggacatcatcgatgacatgaggacgaatcatgcagtgggta------------gggcgtggaaagcaaaacagatagctcagaaaattgttgagggtgat |
3437487 |
T |
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| Q |
112 |
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagggtgagtatcactgttgataggccagatccag |
211 |
Q |
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| T |
3437486 |
gctgattgtcaatactcaatgataaggagatatgctgctgaacttaaaagagtgtgtcctggaaacagtgtgagtatcaatgttgataggccagatccag |
3437387 |
T |
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| Q |
212 |
gattacaacccaggtttggatctttttacttttgttttgatggctgcaaaaaaggg |
267 |
Q |
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| T |
3437386 |
gattacaacccaggtttggatctttttacttttgttttgatggatgcaaaaaaggg |
3437331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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