View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0304_1D_low_20 (Length: 255)

Name: NF0304_1D_low_20
Description: NF0304_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0304_1D_low_20
NF0304_1D_low_20
[»] chr3 (8 HSPs)
chr3 (7-255)||(35695031-35695285)
chr3 (140-223)||(557578-557662)
chr3 (156-227)||(47720898-47720969)
chr3 (177-230)||(26373382-26373435)
chr3 (163-243)||(30498991-30499071)
chr3 (142-225)||(42433421-42433504)
chr3 (178-249)||(26482523-26482594)
chr3 (140-224)||(28541480-28541564)
[»] chr6 (3 HSPs)
chr6 (11-255)||(1717583-1717827)
chr6 (139-229)||(31750232-31750323)
chr6 (196-240)||(30625567-30625611)
[»] chr2 (9 HSPs)
chr2 (7-255)||(25221608-25221857)
chr2 (11-254)||(31055413-31055656)
chr2 (140-229)||(17303530-17303620)
chr2 (153-229)||(33050827-33050903)
chr2 (177-229)||(35658276-35658328)
chr2 (18-68)||(35658157-35658206)
chr2 (36-98)||(38001941-38002003)
chr2 (167-228)||(18481911-18481971)
chr2 (138-226)||(39711495-39711583)
[»] chr4 (9 HSPs)
chr4 (10-251)||(51267340-51267578)
chr4 (7-229)||(7784643-7784865)
chr4 (153-227)||(22065807-22065881)
chr4 (89-205)||(41322015-41322132)
chr4 (140-229)||(20626618-20626707)
chr4 (139-227)||(38011455-38011544)
chr4 (138-229)||(12328414-12328506)
chr4 (162-222)||(41421371-41421431)
chr4 (183-244)||(23096488-23096549)
[»] chr5 (6 HSPs)
chr5 (145-252)||(18012869-18012976)
chr5 (138-229)||(3925536-3925630)
chr5 (163-245)||(5215129-5215211)
chr5 (138-230)||(4157577-4157670)
chr5 (162-228)||(35078046-35078112)
chr5 (138-197)||(35193242-35193302)
[»] scaffold0042 (1 HSPs)
scaffold0042 (138-230)||(31132-31225)
[»] chr1 (6 HSPs)
chr1 (139-245)||(14635725-14635830)
chr1 (167-228)||(11871507-11871568)
chr1 (167-228)||(18628874-18628935)
chr1 (138-194)||(32365995-32366052)
chr1 (176-229)||(43031353-43031406)
chr1 (173-225)||(23043549-23043601)
[»] chr7 (2 HSPs)
chr7 (173-243)||(43574000-43574070)
chr7 (140-229)||(22575185-22575279)
[»] scaffold0445 (1 HSPs)
scaffold0445 (138-226)||(10393-10482)
[»] scaffold0174 (1 HSPs)
scaffold0174 (139-226)||(30744-30829)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 35695031 - 35695285
Alignment:
Q  7 ttggtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtac-----cgtcctt 101  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||     |||||||    
T  35695031 ttggtgttccttgcttgattctcttattcttccaggtctattgagatctgcagatcttgatgcttcaggtccgcctccacaccggtaccgtaccgtcctt 35695130  T
Q  102 ttatccgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatctt-gtt 200  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |||    
T  35695131 ttatccgtcgtagtccgtgtgattgttttcggagtgatgctcgaaagagctttatacctgctgctttgtttaggggattgctggtacgtggatcttagtt 35695230  T
Q  201 accgtgatgacggtcgatccattcgccaacctaaaacccttttttatcctactga 255  Q
     |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35695231 gccgtgatgacggtcgatccattcgccaacctaaaacccctttttatcctactga 35695285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 557578 - 557662
Alignment:
Q  140 gctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccatt 223  Q
    ||||||||||||| ||||||||  || |||||| |||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  557578 gctcgaaagagctattatacctgatgttttgttcagggggttgttggtacgtggatcttgataccgtgttggcggtcgatccatt 557662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 47720898 - 47720969
Alignment:
Q  156 tacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcc 227  Q
    ||||| ||| |||||| |||||||||||||||||||||||||| |||| || || |||||||||||||||||    
T  47720898 tacctgctgttttgttcagggggttgttggtacgtggatcttgataccttgttggcggtcgatccattcgcc 47720969  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 26373435 - 26373382
Alignment:
Q  177 ggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaac 230  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  26373435 ggttgctggtacgtggatcttgataccgtgttgacggtcgatccattcgccaac 26373382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 30499071 - 30498991
Alignment:
Q  163 tgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaaccctttt 243  Q
    ||||||||| ||||||||| |||||| |||||||||  |||||| || |||||||||||||||||||  || |||||||||    
T  30499071 tgctttgttgagggggttgctggtacttggatcttgaaaccgtgttggcggtcgatccattcgccaatttataaccctttt 30498991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 42433504 - 42433421
Alignment:
Q  142 tcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcg 225  Q
    ||||||||||| |||||||| |||||||||| ||||| ||| |||||||||||||| | ||||||| || |||| ||||||||||    
T  42433504 tcgaaagagctattatacctgctgctttgttcagggg-ttgctggtacgtggatctcgataccgtgttggcggtggatccattcg 42433421  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 26482523 - 26482594
Alignment:
Q  178 gttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaacccttttttatcc 249  Q
    ||||||||||||||||||||| | || || || ||||||||||| ||| |||| || | |||||||||||||    
T  26482523 gttgttggtacgtggatcttgatgccatgttggcggtcgatccactcgtcaacttataccccttttttatcc 26482594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 28541564 - 28541480
Alignment:
Q  140 gctcgaaagagctt-tatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattc 224  Q
    |||||||||||||  ||| ||| || ||||||| ||||||||| |||||| ||||| ||| ||||||| || ||||||||||||||    
T  28541564 gctcgaaagagctcctatgcctgctactttgttcagggggttgatggtacatggat-ttgataccgtgttggcggtcgatccattc 28541480  T

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Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 1717827 - 1717583
Alignment:
Q  11 tgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtaccgtccttttatccgtt 110  Q
    |||||||||||||||| ||||||| || ||||||||||||||||||||||||| ||||| | ||| ||| || ||| ||||||| ||||| || || |||    
T  1717827 tgttccttgcttgattctctgattttttcaggtctgttgagatctgcaggtctcgatgcatcagggccgacttcactccggtacagtcctcttgtctgtt 1717728  T
Q  111 gcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatga 210  Q
    ||||| | ||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||  ||||||| ||||||||||| ||     
T  1717727 gcagtccttgtgattgttttcggagtgttgctcgaaagagctttatacctgctgctttgttcagggggttgctggatcgtggattttgttaccgtgctgg 1717628  T
Q  211 cggtcgatccattcgccaacctaaaacccttttttatcctactga 255  Q
    |||||||||||| ||||||  | ||||||  | ||||||||||||    
T  1717627 cggtcgatccatacgccaatattaaacccgctcttatcctactga 1717583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 229
Target Start/End: Original strand, 31750232 - 31750323
Alignment:
Q  139 tgctcgaaagagct-ttatacctactgctttgtttaggggg-ttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 229  Q
    |||||||||||||| |||||||| ||||||| || |||||| ||| |||||||||||| ||||||||||| || |||||||||||||||||||    
T  31750232 tgctcgaaagagctattatacctgctgctttattcaggggggttgctggtacgtggat-ttgttaccgtgttggcggtcgatccattcgccaa 31750323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 30625611 - 30625567
Alignment:
Q  196 ttgttaccgtgatgacggtcgatccattcgccaacctaaaaccct 240  Q
    ||||||||||| || ||||||||||||||||||| || |||||||    
T  30625611 ttgttaccgtgttggcggtcgatccattcgccaaacttaaaccct 30625567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 25221608 - 25221857
Alignment:
Q  7 ttggtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtaccgtccttttatc 106  Q
    |||||||||||||||||||| ||||||  || ||||||||||||||| ||||||||||||||| | |||||||||| |||   ||||||||| | || ||    
T  25221608 ttggtgttccttgcttgattctctgatattttcaggtctgttgagatttgcaggtcttgatgcatcaggtccgccttcactatggtaccgtcttcttgtc 25221707  T
Q  107 cgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtg 206  Q
    ||||||||| | |||||||||| ||||| || |||||||||||||||||||||| ||| |||||| ||||||||| ||| |||||||||||| |||| ||    
T  25221708 cgttgcagtccttgtgattgttctcggattgttgctcgaaagagctttatacctgctgatttgttcagggggttgctggaacgtggatcttggtaccatg 25221807  T
Q  207 atgacggtcgatccattcgccaacct-aaaacccttttttatcctactga 255  Q
     || |||||||||||| || ||| || |||||| |||| |||||||||||    
T  25221808 ctggcggtcgatccatacgtcaatctaaaaaccattttgtatcctactga 25221857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 31055413 - 31055656
Alignment:
Q  11 tgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtaccgtccttttatccgtt 110  Q
    ||||||| |||||||| ||||||  || ||||| ||||||||| |||||||||  |||| | |||||| ||| ||| ||||||||||| | || ||| ||    
T  31055413 tgttcctagcttgattctctgatattttcaggtttgttgagatatgcaggtctcaatgcatcaggtcctccttcactccggtaccgtcatcttgtccctt 31055512  T
Q  111 gcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatga 210  Q
    ||||| | ||||| |||| |||||||| |||||||||||||||||||||| ||||||| || ||||||||| |||  ||||||| ||||||||||| ||     
T  31055513 gcagtccttgtgagtgttctcggagtgttgctcgaaagagctttataccttctgcttttttcagggggttgctggaccgtggat-ttgttaccgtgttgg 31055611  T
Q  211 cggtcgatccattcgccaa-cctaaaacccttttttatcctactg 254  Q
    |||||||||||| |||||| | ||||||||| |||||| ||||||    
T  31055612 cggtcgatccatacgccaatcttaaaaccctcttttattctactg 31055656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 17303530 - 17303620
Alignment:
Q  140 gctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 229  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| | || |||| || |||| |||| |||||||||    
T  17303530 gctcgaaagagctattatacctgctgctttgttcagggggttgttggtacgtggatctcgatatcgtgttggcggtggatctattcgccaa 17303620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 33050903 - 33050827
Alignment:
Q  153 ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 229  Q
    |||||||| |||||||||| ||||| |   |||||||||||| | | ||||||| || |||||||||||||||||||    
T  33050903 ttatacctgctgctttgttcaggggatcactggtacgtggatttggataccgtgttggcggtcgatccattcgccaa 33050827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 35658276 - 35658328
Alignment:
Q  177 ggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 229  Q
    ||||| ||||||||||||| | |||||||| || |||||||||||||||||||    
T  35658276 ggttgctggtacgtggatcgttttaccgtgttggcggtcgatccattcgccaa 35658328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 35658157 - 35658206
Alignment:
Q  18 tgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatg 68  Q
    ||||||||| ||||||  ||||||||||||| |||||||||||||||||||    
T  35658157 tgcttgattctctgatg-ttccaggtctgtttagatctgcaggtcttgatg 35658206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 38001941 - 38002003
Alignment:
Q  36 ttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtaccgtc 98  Q
    ||||||||||||| ||||||||||||||  |||| | | ||| |||||||| |||||||||||    
T  38001941 ttccaggtctgtttagatctgcaggtctctatgcgtcaagtctgcctccactccggtaccgtc 38002003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 18481971 - 18481911
Alignment:
Q  167 ttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcca 228  Q
    |||||||||| |||||||| || ||||| | ||||||||| || ||||||||||||||||||    
T  18481971 ttgtttagggagttgttggcacttggat-tcgttaccgtgttggcggtcgatccattcgcca 18481911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 39711583 - 39711495
Alignment:
Q  138 atgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgc 226  Q
    ||||| ||||||| ||||| | | |||||||||| || | | |||||| || ||||| ||||||||||| || ||||| ||||||||||    
T  39711583 atgcttgaaagagttttatgcttgctgctttgttcagagagctgttggcacttggattttgttaccgtgttggcggtctatccattcgc 39711495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 51267340 - 51267578
Alignment:
Q  10 gtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtaccgtccttttatccgt 109  Q
    ||||| ||||||||||| ||| ||  |||||||||| ||||||||||||||||| ||||| |||||||| |||  || |||||  ||||   || || ||    
T  51267340 gtgtttcttgcttgattctctaatatttccaggtctattgagatctgcaggtctcgatgcattaggtccaccttaactccggtgtcgtc---ttgtctgt 51267436  T
Q  110 tgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatg 209  Q
    |||||| | ||||| |||| || ||||| ||||||||| |||||||||||| |||||||||| ||||||||| ||| |||||||| ||||||| ||| ||    
T  51267437 tgcagtccttgtgactgttctcagagtgttgctcgaaaaagctttatacctgctgctttgttcagggggttgctggaacgtggat-ttgttactgtgttg 51267535  T
Q  210 acggtcgatccattcgccaacct-aaaacccttttttatccta 251  Q
     | |||||||||| | |||| || |||||||||||||||||||    
T  51267536 gcagtcgatccatacaccaatctaaaaacccttttttatccta 51267578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 7784643 - 7784865
Alignment:
Q  7 ttggtgttccttgcttgattatctgattcttccaggtctgttgagatctgcaggtcttgatgctttaggtccgcctccacaccggtaccgtccttttatc 106  Q
    |||||||||||||||||||| ||||||  |||||| ||| ||||||||||||| ||| ||||| | ||| |||||| ||| |  ||||||||   || ||    
T  7784643 ttggtgttccttgcttgattctctgatatttccagctcttttgagatctgcagctctcgatgcatcaggcccgccttcactctagtaccgtctcattttc 7784742  T
Q  107 cgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtg 206  Q
    ||||||||| | || ||||||| || ||||| ||||||||||||| |||||||| |||||||| | ||||| ||| ||| |||||||| |||||||||||    
T  7784743 cgttgcagtccttgggattgttctcagagtgttgctcgaaagagcgttatacctgctgctttgctcaggggattgctggaacgtggattttgttaccgtg 7784842  T
Q  207 atgacggtcgatccattcgccaa 229  Q
     || | ||| |||||| ||||||    
T  7784843 ctggctgtcaatccatacgccaa 7784865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 22065807 - 22065881
Alignment:
Q  153 ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcc 227  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||    
T  22065807 ttatacctgctgctttgttaagggggttgttggtacgtggatcttgataccgtgttggcggtcgatccattcgcc 22065881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 41322015 - 41322132
Alignment:
Q  89 cggtaccgtccttttatccgttgcagtgcgtgtga-ttgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggta 187  Q
    |||||| ||||| |||||||||||||| | ||||| ||||||| |  ||| ||||||| |||||||||||||| |||||||||| ||||  ||| |||      
T  41322015 cggtactgtcctcttatccgttgcagttcttgtgacttgttttagaggtgttgctcgacagagctttatacctgctgctttgttcagggaattgctggac 41322114  T
Q  188 cgtggatcttgttaccgt 205  Q
     |||||||||||||||||    
T  41322115 tgtggatcttgttaccgt 41322132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 20626707 - 20626618
Alignment:
Q  140 gctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 229  Q
    |||| |||||||| | ||||| || ||| ||| ||||||||| | |||||||||||||| ||||||| || |||| ||||||||||||||    
T  20626707 gctcaaaagagctatttacctgctacttggttcagggggttgctagtacgtggatcttgataccgtgttggcggttgatccattcgccaa 20626618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 38011544 - 38011455
Alignment:
Q  139 tgctcgaaagagcttt-atacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcc 227  Q
    |||||||||||||||| || | | |||||| ||| |||| | |||||| || ||||| ||||||||||| ||||||||||||||||||||    
T  38011544 tgctcgaaagagcttttatgcttgctgcttagttcagggagctgttggcacttggattttgttaccgtgttgacggtcgatccattcgcc 38011455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 12328414 - 12328506
Alignment:
Q  138 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 229  Q
    ||||||||||||||| |||| ||  |||  ||||| ||||||||| ||||| ||||||| || ||||||  ||||||||||||||||| ||||    
T  12328414 atgctcgaaagagctattatgccggctgtgttgttcagggggttgctggtatgtggatcgtgataccgtattgacggtcgatccattcaccaa 12328506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 41421431 - 41421371
Alignment:
Q  162 ctgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccat 222  Q
    |||||||||| |||| | |||||| |||||||| ||||||||||| || ||||||||||||    
T  41421431 ctgctttgttcagggagctgttggcacgtggattttgttaccgtgttggcggtcgatccat 41421371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 23096549 - 23096488
Alignment:
Q  183 tggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaacccttttt 244  Q
    |||||||||||| ||| ||||||| || |||||||||||||| ||||  |||||| ||||||    
T  23096549 tggtacgtggattttgataccgtgttggcggtcgatccattcaccaatttaaaactcttttt 23096488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 18012869 - 18012976
Alignment:
Q  145 aaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaacccttttt 244  Q
    |||||||||| | | | |||||||||| | |||||||||||||||||||||||| ||||||  || ||||| ||| |||||||||| ||||||||| |||    
T  18012869 aaagagctttgtgcatgctgctttgttcaaggggttgttggtacgtggatcttgataccgtattggcggtcaatcaattcgccaacttaaaaccctcttt 18012968  T
Q  245 tatcctac 252  Q
    ||||||||    
T  18012969 tatcctac 18012976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 229
Target Start/End: Original strand, 3925536 - 3925630
Alignment:
Q  138 atgctcgaaagagct----ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 229  Q
    |||||||||||||||    |||||||| |||||||||| ||||||||| |||||||||||| ||||||||||| ||  ||||||||||||||||||    
T  3925536 atgctcgaaagagctattattatacctgctgctttgttcagggggttgctggtacgtggat-ttgttaccgtgttggtggtcgatccattcgccaa 3925630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 5215129 - 5215211
Alignment:
Q  163 tgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaaccctttttt 245  Q
    ||||||||| | ||||||||||||||||||||||||  || ||| ||||||||||||||||  ||||  || |||||||||||    
T  5215129 tgctttgttcaaggggttgttggtacgtggatcttgaaactgtgttgacggtcgatccatttaccaaattataaccctttttt 5215211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 4157577 - 4157670
Alignment:
Q  138 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaac 230  Q
    ||||| ||||||||| || | ||||||  |||||| ||| || || |||| ||||||||||| ||||||| |||||||| ||||||||||||||    
T  4157577 atgctggaaagagctattttgcctactattttgttcaggaggctgctggtgcgtggatcttgataccgtgttgacggtcaatccattcgccaac 4157670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 35078112 - 35078046
Alignment:
Q  162 ctgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcca 228  Q
    ||||||| || | ||||||  ||||||||||||||||  |||||| || ||||||||||||||||||    
T  35078112 ctgctttcttcatggggtttctggtacgtggatcttgaaaccgtgttggcggtcgatccattcgcca 35078046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 35193242 - 35193302
Alignment:
Q  138 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatctt 197  Q
    ||||||||||||||| |||| |||| || |||||| ||| ||||||||||||| |||||||    
T  35193242 atgctcgaaagagctattatgcctattggtttgttcaggaggttgttggtacgcggatctt 35193302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 31132 - 31225
Alignment:
Q  138 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaac 230  Q
    ||||||||||||||| || | |||  || |||||| ||| ||||| |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  31132 atgctcgaaagagctattttgcctggtgttttgttcaggaggttgctggtacgtggatcttgataccgtgttgacggtcgatccattcgccaac 31225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 14635830 - 14635725
Alignment:
Q  139 tgctcgaaagagctt-tatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaac 237  Q
    ||||||||||||||  ||| ||| |||||||||| |||||| | | ||||||||||| ||||||||||| |||||||||||||||||||| || | ||||    
T  14635830 tgctcgaaagagctcctatgcctgctgctttgttcaggggggtct-ggtacgtggat-ttgttaccgtgttgacggtcgatccattcgcctactttaaac 14635733  T
Q  238 cctttttt 245  Q
    ||||||||    
T  14635732 cctttttt 14635725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 11871507 - 11871568
Alignment:
Q  167 ttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcca 228  Q
    ||||| |||| |||||||| || ||||| ||||||||||| |  ||||||||||||||||||    
T  11871507 ttgttcagggagttgttggcacttggattttgttaccgtgttagcggtcgatccattcgcca 11871568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 18628935 - 18628874
Alignment:
Q  167 ttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcca 228  Q
    ||||| |||| | |||||| || ||||| ||||||||||| || ||||||||||||||||||    
T  18628935 ttgttcagggagctgttggcacttggattttgttaccgtgttggcggtcgatccattcgcca 18628874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 32365995 - 32366052
Alignment:
Q  138 atgctcgaaagagcttt-atacctactgctttgtttagggggttgttggtacgtggat 194  Q
    ||||||||||||||||| || ||| |||| ||||||  ||||||||||||||||||||    
T  32365995 atgctcgaaagagcttttatgcctgctgcattgtttgaggggttgttggtacgtggat 32366052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 43031406 - 43031353
Alignment:
Q  176 gggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 229  Q
    |||||| |||||||||||||| ||||||||| || |||| ||||||||| ||||    
T  43031406 gggttgctggtacgtggatctggttaccgtgttggcggtagatccattcaccaa 43031353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 23043549 - 23043601
Alignment:
Q  173 agggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcg 225  Q
    ||||||||| |||||||||||| ||| ||||||| ||  ||||||||||||||    
T  23043549 agggggttgctggtacgtggatattgataccgtgttggtggtcgatccattcg 23043601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 43574070 - 43574000
Alignment:
Q  173 agggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaaccctttt 243  Q
    ||||||||| |||||||||||||||| ||||||| || |||||  ||||||||||||  ||||||||||||    
T  43574070 agggggttgctggtacgtggatcttgataccgtgttggcggtcagtccattcgccaatttaaaaccctttt 43574000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 229
Target Start/End: Complemental strand, 22575279 - 22575185
Alignment:
Q  140 gctcgaaagagc-tttatacctactgctttgtttagggggttgttggtacgtggatcttgtt---accgtgatgac-ggtcgatccattcgccaa 229  Q
    |||||||||||| ||||  ||| |||||||||| ||||||||| ||||||||||||||| ||   |||||| || | ||||||||||||||||||    
T  22575279 gctcgaaagagcatttacgcctgctgctttgttcagggggttgctggtacgtggatcttcttgataccgtgttggctggtcgatccattcgccaa 22575185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 10393 - 10482
Alignment:
Q  138 atgctcgaaagagctt-tatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgc 226  Q
    |||||| ||||||||| ||| ||| |||||||||| ||||||||| ||||||||||||||||  || ||| || |||| |||||||||||    
T  10393 atgctcaaaagagcttctatgcctgctgctttgttcagggggttgctggtacgtggatcttgaaactgtgttggcggtggatccattcgc 10482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 30744 - 30829
Alignment:
Q  139 tgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgc 226  Q
    |||||||||||||||||| | | |||||| ||  |||| |||||||| || ||||| ||||||||||| |||||||| ||||||||||    
T  30744 tgctcgaaagagctttatgcttgctgctt-gtgcagggagttgttggcacttggat-ttgttaccgtgttgacggtcaatccattcgc 30829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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