View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0304_1D_low_22 (Length: 249)
Name: NF0304_1D_low_22
Description: NF0304_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304_1D_low_22 |
 | |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 35231130 - 35231330
Alignment:
| Q |
6 |
agatggacatcagtggaaagagcttcacaccaaaaatcgtgaaggcacatgagactctaacaaaagggtgcgaacaacatcaagcaaatgacggttgttt |
105 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35231130 |
agatggacagcagtggaaagagcttcacaccaaaa-tcgtgaaggcacatgagactctaacaaaagggtgcgaacaacatcaagcaaatgacggtttttt |
35231228 |
T |
|
| Q |
106 |
ctttccgctaccccattttgttgtggagttgaggggcatgacctttgagatataatgccattagattgcaaaaattcctgaaatgagtgtgacatgtact |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35231229 |
ctttccgctaccccattttgttgtggagttgaggggcatgacctttgagatataatgccattagattgcaaaaattcctgaaatgagtgtgacatgtact |
35231328 |
T |
|
| Q |
206 |
cc |
207 |
Q |
| |
|
|| |
|
|
| T |
35231329 |
cc |
35231330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 11292394 - 11292194
Alignment:
| Q |
6 |
agatggacatcagtggaaagagcttcacaccaaaaatcgtgaaggcacatgagactctaacaaaagggtgcgaacaacatcaagcaaatgacggttgttt |
105 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
11292394 |
agatggacagcagtggaaagagcttcacaccaaaa-tcgtgaaggcacatgagactctaacaaaagggtgcgaacaacatcaagcaaatgacggtttttt |
11292296 |
T |
|
| Q |
106 |
ctttccgctaccccattttgttgtggagttgaggggcatgacctttgagatataatgccattagattgcaaaaattcctgaaatgagtgtgacatgtact |
205 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11292295 |
ctttccgctaccccattttgttatggagttgaggggcatgacctttgagatataatgccattagattgcaaaaattcctgaaatgagtgtgacatgtact |
11292196 |
T |
|
| Q |
206 |
cc |
207 |
Q |
| |
|
|| |
|
|
| T |
11292195 |
cc |
11292194 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 15086031 - 15085831
Alignment:
| Q |
6 |
agatggacatcagtggaaagagcttcacaccaaaaatcgtgaaggcacatgagactctaacaaaagggtgcgaacaacatcaagcaaatgacggttgttt |
105 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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|
| T |
15086031 |
agatggacagcagtggaaagagcttcacaccaaaa-tcgtgaaggcacatgagactctaacaaaagggtgcgaacaacatcaaacaaatgacggtttttt |
15085933 |
T |
|
| Q |
106 |
ctttccgctaccccattttgttgtggagttgaggggcatgacctttgagatataatgccattagattgcaaaaattcctgaaatgagtgtgacatgtact |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15085932 |
ctttccgctaccccattttgttgtggagttaaggggcatgacctttgagatataatgccattagattgcaaaaattcctgaaatgagtgtgacatgtact |
15085833 |
T |
|
| Q |
206 |
cc |
207 |
Q |
| |
|
|| |
|
|
| T |
15085832 |
cc |
15085831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 44873836 - 44874021
Alignment:
| Q |
18 |
gtggaaagagcttcacaccaaaaatcgtgaaggcacatgagactctaacaaaagggtgcgaacaacatcaagcaaatgacggttgttt-ctttccgctac |
116 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| ||||||||||||||||||| ||||| ||| ||||||||| | |
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|
| T |
44873836 |
gtggaaagggcttcacaccaaaa-tcgtgaaggcacatgagacttcaacaaaagagtgtgaacaacatcaagcaaatggcggtttttttctttccgctgc |
44873934 |
T |
|
| Q |
117 |
cccattttgttgtggagttgaggggcatgacctttgagatataatgccattagattgcaaaaattcctgaaatgagtgtgacatgta |
203 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||||||||||| | |||||||||||||||||||| |
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|
| T |
44873935 |
cccattttgttgtggagctgaggggcatgatctttgagatataataccattgtattgcaaaaatgcttgaaatgagtgtgacatgta |
44874021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 64573 - 64373
Alignment:
| Q |
6 |
agatggacatcagtggaaagagcttcacaccaaaaatcgtgaaggcacatgagactctaacaaaagggtgcgaacaacatcaagcaaatgacggttgttt |
105 |
Q |
| |
|
||||||| | || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
64573 |
agatggatagcaatggaaagagcttcacaccaaaa-tcgtgaaggcacatgagactctaacaaaagggtgcgaacaacatcaagcaaatgacggtttttt |
64475 |
T |
|
| Q |
106 |
ctttccgctaccccattttgttgtggagttgaggggcatgacctttgagatataatgccattagattgcaaaaattcctgaaatgagtgtgacatgtact |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
64474 |
ctttccgctaccccattttgttgtggagttgaggggcatgacctttgagatataatgccattagattgcaaaaattcctgaaatgagtgtgacatgtact |
64375 |
T |
|
| Q |
206 |
cc |
207 |
Q |
| |
|
|| |
|
|
| T |
64374 |
cc |
64373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 5880765 - 5880819
Alignment:
| Q |
103 |
tttctttccgctaccccattttgttgtggagttgaggggcatgacctttgagata |
157 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| || || |||||||||||||||| |
|
|
| T |
5880765 |
tttctttccgctaccccgttttgttggggagtggaaggacatgacctttgagata |
5880819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 28146856 - 28146658
Alignment:
| Q |
8 |
atggacatcagtggaaagagcttcacaccaaaaatcgtgaaggcacatgagactctaacaaaagggtgcgaacaacatcaagcaaatgacggttgtttct |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| |
|
|
| T |
28146856 |
atggacaacagtggaaagagcttcacaccaaaa-tcgtgaaggcacatgagactctaacaaaagggtgagaacaacatcaagcaaatgacagttttttct |
28146758 |
T |
|
| Q |
108 |
ttccgctaccccattttgttgtggagttgaggggcatgacctttgagatataatgccattagattgcaaaaattcctgaaatgagtgtgacatgtactcc |
207 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28146757 |
ttctgctaccccattttgttgtggagttgaggggcatgacctttgagatataatgccattagattgcaaaaattcctgaaatgagtgtgacatgtactcc |
28146658 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 5289104 - 5288908
Alignment:
| Q |
6 |
agatggacatcagtggaaagagcttcacaccaaaaatcgtgaaggcacatgagactctaacaaaagggtgcgaacaacatcaagcaaatgacggttgttt |
105 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
5289104 |
agatgaacagcagtggaaagagcttcacaccaaaac-cgtgaaggcacatgagactctaacaaaacggtgcgaacaacatcaagcaaatgacggtttttt |
5289006 |
T |
|
| Q |
106 |
ctttccgctaccccattttgttgtggagttgaggggcatgacctttgagatataatgccattagattgcaaaaattcctgaaatgagtgtgacatgta |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289005 |
ctttccgctaccccattttgttgtggagttgagggacatgacctttgagatataatgccattagattgcaaaaattcctgaaatgagtgtgacatgta |
5288908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 18415126 - 18414930
Alignment:
| Q |
6 |
agatggacatcagtggaaagagcttcacaccaaaaatcgtgaaggcacatgagactctaacaaaagggtgcgaacaacatcaagcaaatgacggttgttt |
105 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
18415126 |
agatgaacagcagtggaaagagcttcacaccaaaac-cgtgaaggcacatgagactctaacaaaacggtgcgaacaacatcaagcaaatgacggtttttt |
18415028 |
T |
|
| Q |
106 |
ctttccgctaccccattttgttgtggagttgaggggcatgacctttgagatataatgccattagattgcaaaaattcctgaaatgagtgtgacatgta |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18415027 |
ctttccgctaccccattttgttgtggagttgagggacatgacctttgagatataatgccattagattgcaaaaattcctgaaatgagtgtgacatgta |
18414930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 19919659 - 19919463
Alignment:
| Q |
6 |
agatggacatcagtggaaagagcttcacaccaaaaatcgtgaaggcacatgagactctaacaaaagggtgcgaacaacatcaagcaaatgacggttgttt |
105 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||| |
|
|
| T |
19919659 |
agatggacatcagtggaaagagcttcataccaaaa-tcgtgaaggcacatgagactctaacaaatgggtgcgaacaacatcgagcaaatgacggtttttt |
19919561 |
T |
|
| Q |
106 |
ctttccgctaccccattttgttgtggagttgaggggcatgacctttgagatataatgccattagattgcaaaaattcctgaaatgagtgtgacatgta |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
19919560 |
ctttccgctaccccattttgttgtggagtcgaggcgcatgacctttgagatataatgccattagattgcaaaaatgcttgaaatgagtgtgacatgta |
19919463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 16546 - 16501
Alignment:
| Q |
160 |
atgccattagattgcaaaaa-ttcctgaaatgagtgtgacatgtac |
204 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| | |||||| |
|
|
| T |
16546 |
atgccattagattgcaaaaaattcctgaaatgagtgtaaaatgtac |
16501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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