View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0304_1D_low_27 (Length: 239)

Name: NF0304_1D_low_27
Description: NF0304_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0304_1D_low_27
NF0304_1D_low_27
[»] scaffold0197 (2 HSPs)
scaffold0197 (2-207)||(19254-19459)
scaffold0197 (6-207)||(14403-14604)
[»] scaffold0028 (1 HSPs)
scaffold0028 (2-207)||(149045-149250)
[»] chr8 (8 HSPs)
chr8 (2-207)||(35745182-35745387)
chr8 (6-207)||(10684358-10684559)
chr8 (54-181)||(39784965-39785091)
chr8 (41-176)||(6311121-6311254)
chr8 (54-181)||(25328420-25328545)
chr8 (41-176)||(7290055-7290188)
chr8 (86-152)||(18853353-18853418)
chr8 (48-152)||(10689289-10689392)
[»] chr6 (13 HSPs)
chr6 (2-206)||(16838536-16838740)
chr6 (2-206)||(6005209-6005413)
chr6 (2-207)||(5343271-5343477)
chr6 (1-207)||(33330533-33330741)
chr6 (1-206)||(33336030-33336237)
chr6 (20-181)||(28155676-28155837)
chr6 (19-208)||(6438292-6438480)
chr6 (48-207)||(11856764-11856921)
chr6 (54-181)||(14737718-14737843)
chr6 (54-181)||(28184320-28184448)
chr6 (48-181)||(14742571-14742702)
chr6 (48-178)||(22010832-22010960)
chr6 (48-152)||(30125940-30126044)
[»] chr5 (18 HSPs)
chr5 (2-206)||(2785167-2785371)
chr5 (2-209)||(31401939-31402146)
chr5 (2-207)||(31397082-31397287)
chr5 (2-207)||(33791107-33791312)
chr5 (2-207)||(33767970-33768175)
chr5 (20-206)||(37561551-37561740)
chr5 (20-207)||(37556729-37556919)
chr5 (19-206)||(28807678-28807868)
chr5 (41-176)||(1457290-1457423)
chr5 (41-176)||(27444793-27444926)
chr5 (41-176)||(27449637-27449770)
chr5 (41-156)||(43592120-43592235)
chr5 (41-176)||(43598547-43598680)
chr5 (41-176)||(43604039-43604172)
chr5 (41-176)||(43609531-43609664)
chr5 (54-181)||(15044507-15044630)
chr5 (55-156)||(30631249-30631349)
chr5 (55-107)||(24135742-24135794)
[»] scaffold0259 (1 HSPs)
scaffold0259 (2-206)||(2340-2544)
[»] chr3 (15 HSPs)
chr3 (1-207)||(10207724-10207931)
chr3 (1-210)||(2677175-2677386)
chr3 (1-210)||(2673019-2673230)
chr3 (6-207)||(8516886-8517088)
chr3 (6-206)||(8512007-8512208)
chr3 (6-206)||(32475276-32475476)
chr3 (6-207)||(32480132-32480334)
chr3 (2-148)||(24967957-24968103)
chr3 (20-210)||(18656224-18656410)
chr3 (48-178)||(22173330-22173458)
chr3 (41-152)||(2671725-2671836)
chr3 (41-152)||(7167092-7167201)
chr3 (41-156)||(28503995-28504108)
chr3 (86-152)||(8739249-8739314)
chr3 (86-152)||(9091487-9091552)
[»] scaffold0009 (1 HSPs)
scaffold0009 (6-209)||(182058-182261)
[»] chr7 (13 HSPs)
chr7 (6-207)||(16879863-16880064)
chr7 (6-207)||(16884719-16884920)
chr7 (6-207)||(24261417-24261618)
chr7 (6-206)||(24266296-24266496)
chr7 (14-206)||(21812339-21812532)
chr7 (19-206)||(19992104-19992292)
chr7 (36-181)||(24024451-24024594)
chr7 (48-181)||(12396730-12396861)
chr7 (48-181)||(12406150-12406281)
chr7 (54-181)||(31109725-31109849)
chr7 (60-181)||(4866548-4866667)
chr7 (28-152)||(20357672-20357797)
chr7 (86-152)||(2057806-2057871)
[»] chr1 (7 HSPs)
chr1 (27-209)||(43988580-43988762)
chr1 (19-210)||(39445288-39445479)
chr1 (19-206)||(25445195-25445382)
chr1 (36-181)||(44023997-44024140)
chr1 (19-206)||(1055117-1055304)
chr1 (96-181)||(41386566-41386650)
chr1 (88-181)||(41398055-41398147)
[»] chr2 (7 HSPs)
chr2 (6-207)||(19349069-19349270)
chr2 (6-206)||(19344212-19344412)
chr2 (54-206)||(32246577-32246728)
chr2 (54-181)||(39812129-39812255)
chr2 (48-178)||(44312759-44312887)
chr2 (41-152)||(9296540-9296651)
chr2 (41-106)||(14291380-14291446)
[»] chr4 (9 HSPs)
chr4 (19-206)||(18855519-18855706)
chr4 (36-206)||(3813816-3813986)
chr4 (48-207)||(9224542-9224699)
chr4 (20-210)||(5732454-5732640)
chr4 (48-181)||(9229329-9229460)
chr4 (54-206)||(45347959-45348109)
chr4 (54-206)||(45357438-45357588)
chr4 (41-177)||(56146840-56146974)
chr4 (41-176)||(51520280-51520413)
[»] scaffold0464 (1 HSPs)
scaffold0464 (19-207)||(154-342)
[»] scaffold0355 (2 HSPs)
scaffold0355 (36-181)||(9764-9907)
scaffold0355 (36-181)||(13-148)
[»] scaffold0135 (1 HSPs)
scaffold0135 (48-181)||(35197-35328)
[»] scaffold0127 (1 HSPs)
scaffold0127 (96-181)||(34132-34216)
[»] scaffold0777 (1 HSPs)
scaffold0777 (158-207)||(6292-6341)
[»] scaffold0479 (1 HSPs)
scaffold0479 (118-207)||(13140-13228)


Alignment Details
Target: scaffold0197 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 19254 - 19459
Alignment:
Q  2 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 101  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  19254 ggtgtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 19353  T
Q  102 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19354 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattca 19453  T
Q  202 caacaa 207  Q
    ||||||    
T  19454 caacaa 19459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 14403 - 14604
Alignment:
Q  6 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  14403 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 14501  T
Q  105 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 204  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  14502 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgaaccggattcacaa 14601  T
Q  205 caa 207  Q
    |||    
T  14602 caa 14604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 149045 - 149250
Alignment:
Q  2 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 101  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  149045 ggtgtttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 149144  T
Q  102 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  149145 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattca 149244  T
Q  202 caacaa 207  Q
    ||||||    
T  149245 caacaa 149250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 35745387 - 35745182
Alignment:
Q  2 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 101  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  35745387 ggtgtttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 35745288  T
Q  102 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35745287 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 35745188  T
Q  202 caacaa 207  Q
    ||||||    
T  35745187 caacaa 35745182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 10684358 - 10684559
Alignment:
Q  6 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  10684358 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 10684456  T
Q  105 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 204  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10684457 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 10684556  T
Q  205 caa 207  Q
    |||    
T  10684557 caa 10684559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 39784965 - 39785091
Alignment:
Q  54 gtgtggttttgctatacattagactta-ggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 152  Q
    |||||||||||||||||| ||| |||| ||||||||||||||| || |||||||| |||||||  ||||| ||||||| |||||||||||||||||||||    
T  39784965 gtgtggttttgctatacactag-cttagggctgttttgttgttattggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 39785063  T
Q  153 attggtttattctcattggtgtgaaggtt 181  Q
     |||||||||| |||||||||||||||||    
T  39785064 tttggtttatt-tcattggtgtgaaggtt 39785091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 176
Target Start/End: Complemental strand, 6311254 - 6311121
Alignment:
Q  41 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 140  Q
    |||||| |||||||||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||  |||||||  ||||| ||||| | |||||||||    
T  6311254 ttgttatctcttagtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggaaaccatttgttctcattgattaccactatcactt 6311155  T
Q  141 gctccacacatcattggtttattctcattggtgtga 176  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  6311154 gctccacacatcatt-gtttatt-tcattggtgtga 6311121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 25328420 - 25328545
Alignment:
Q  54 gtgtggttttgctatacattagacttaggct-gttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 152  Q
    |||||||||||||||||| |||  ||||| | |||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||||| ||||||    
T  25328420 gtgtggttttgctatacactag--ttagggttgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccgcacatc 25328517  T
Q  153 attggtttattctcattggtgtgaaggtt 181  Q
    |||| |||||| |||||| ||||||||||    
T  25328518 attgatttatt-tcattgttgtgaaggtt 25328545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 176
Target Start/End: Original strand, 7290055 - 7290188
Alignment:
Q  41 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 140  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| |||||||||||||| |||||| |||||||  ||||| ||||| | ||||| |||    
T  7290055 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgtttggagaccatttgttctcattgattaccactatctctt 7290154  T
Q  141 gctccacacatcattggtttattctcattggtgtga 176  Q
    ||||||||||||| | ||||||| ||||||||||||    
T  7290155 gctccacacatcaat-gtttatt-tcattggtgtga 7290188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 18853353 - 18853418
Alignment:
Q  86 ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 152  Q
    |||| ||||||||||||||||  ||||||| |||||||||||| | ||||| |||||||||||||||    
T  18853353 tttttttgttgtttgcttggaaaccatttg-actcatagattaccactatctcttgctccacacatc 18853418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 10689289 - 10689392
Alignment:
Q  48 ctcttagtgtggttttgctatacattagacttaggctgtttt-gttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctcca 146  Q
    ||||| ||||||||||||| |||| || |||  || |||||| ||||||||| |||||||  ||||| | |||||||||||| | ||||| |||||||||    
T  10689289 ctctttgtgtggttttgctctacactacactagggttgtttttgttgttgtt-gcttggaaaccattag-actcatagattaccactatctcttgctcca 10689386  T
Q  147 cacatc 152  Q
    ||||||    
T  10689387 cacatc 10689392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 16838740 - 16838536
Alignment:
Q  2 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 101  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  16838740 ggtgtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 16838641  T
Q  102 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 201  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16838640 ttgaaggccatttgcactcatagattatctctatcacttgctccacatatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 16838541  T
Q  202 caaca 206  Q
    |||||    
T  16838540 caaca 16838536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 6005413 - 6005209
Alignment:
Q  2 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 101  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  6005413 ggtgtttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 6005314  T
Q  102 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6005313 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattta 6005214  T
Q  202 caaca 206  Q
    |||||    
T  6005213 caaca 6005209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 5343477 - 5343271
Alignment:
Q  2 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggtttt-gctatacattagacttaggctgttttgttgttgtttg 100  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| |    
T  5343477 ggtgtttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggtttttgctatactttaggcttaggctgttttgttgttgttag 5343378  T
Q  101 cttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  5343377 cttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgacttattctcattggtgtgaaggttcattagttgagccggattc 5343278  T
Q  201 acaacaa 207  Q
    |||||||    
T  5343277 acaacaa 5343271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 33330533 - 33330741
Alignment:
Q  1 tggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggtttt-gctatacattagacttaggctgttttgttgttgtt 98  Q
    |||||||||||| |||  ||| || ||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  33330533 tggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggtttttgctatacattaggcttaggctgttttgttgttgtt 33330632  T
Q  99 tgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggat 198  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33330633 agcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctaattggtgtgaaggttcattagttgagccggat 33330732  T
Q  199 tcacaacaa 207  Q
    |||||||||    
T  33330733 tcacaacaa 33330741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 33336030 - 33336237
Alignment:
Q  1 tggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggttttg-ctatacattagacttaggctgttttgttgttgtt 98  Q
    |||||||||||| |||  ||| || ||||||||||| |||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||    
T  33336030 tggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggtttttactatacattaggcttaggctgttttgttgttgtt 33336129  T
Q  99 tgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggat 198  Q
     | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33336130 agtttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggat 33336229  T
Q  199 tcacaaca 206  Q
    ||||||||    
T  33336230 tcacaaca 33336237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 28155676 - 28155837
Alignment:
Q  20 tttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgca 117  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||| ||||| || ||||||||     
T  28155676 tttaccgtttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttgaagaccatttgct 28155775  T
Q  118 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 181  Q
    ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  28155776 ctcattgattatcactatcacttgctccacacatcatt-gtttatt-gcattggtgtgaaggtt 28155837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 6438480 - 6438292
Alignment:
Q  19 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 115  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| |||||| |    
T  6438480 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccattgg 6438383  T
Q  116 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaaa 208  Q
      ||||| ||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||| || || || ||||| ||||||||||    
T  6438382 ttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggttcgtttgtagaaccggaatcacaacaaa 6438292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 207
Target Start/End: Complemental strand, 11856921 - 11856764
Alignment:
Q  48 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 147  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  11856921 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 11856822  T
Q  148 acatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 207  Q
    |||||||| ||||||| |||||||||||||||||  ||  |||| |||||||||||||||    
T  11856821 acatcatt-gtttatt-tcattggtgtgaaggttttttttttgaaccggattcacaacaa 11856764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 14737718 - 14737843
Alignment:
Q  54 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 153  Q
    |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||||| ||||||||||||||||||||||    
T  14737718 gtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatca 14737817  T
Q  154 ttggtttattctcattggtgtgaaggtt 181  Q
    || ||||||| |||||||||||||||||    
T  14737818 tt-gtttatt-tcattggtgtgaaggtt 14737843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 28184448 - 28184320
Alignment:
Q  54 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggcca--tttgcactcatagattatctctatcacttgctccacacat 151  Q
    |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||  ||||  ||||| ||||||| ||||||||||||||||||||    
T  28184448 gtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttttgttctcattgattatcactatcacttgctccacacat 28184349  T
Q  152 cattggtttattctcattggtgtgaaggtt 181  Q
    |||||||||||| |||||||||||||||||    
T  28184348 cattggtttatt-tcattggtgtgaaggtt 28184320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 14742571 - 14742702
Alignment:
Q  48 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 147  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||| ||||||||| |||||||  ||||| ||||||| ||||||||||||||||    
T  14742571 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtatgcttggagaccatttgttctcattgattatcactatcacttgctccac 14742670  T
Q  148 acatcattggtttattctcattggtgtgaaggtt 181  Q
    |||||||| ||||||| |||||||||||||||||    
T  14742671 acatcatt-gtttatt-tcattggtgtgaaggtt 14742702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 22010832 - 22010960
Alignment:
Q  48 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 147  Q
    ||||| |||||||||||||||||| | | ||  ||| | ||||||||||||||||||||| |||||||  ||||| ||||| | ||||||||||||||||    
T  22010832 ctctttgtgtggttttgctatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccac 22010931  T
Q  148 acatcattggtttattctcattggtgtgaag 178  Q
    |||||||| ||||||| ||||||||||||||    
T  22010932 acatcatt-gtttatt-tcattggtgtgaag 22010960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 30125940 - 30126044
Alignment:
Q  48 ctcttagtgtggttttgctatacattagacttaggctgtttt-gttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctcca 146  Q
    ||||| ||||||||||||| |||| ||| ||  ||||||||| ||||| ||| |||||||| |||||||  ||||||||||||| ||| | |||||||||    
T  30125940 ctctttgtgtggttttgctctacactagtctagggctgtttttgttgtagttagcttggagaccatttgg-ctcatagattatcactacctcttgctcca 30126038  T
Q  147 cacatc 152  Q
    ||||||    
T  30126039 cacatc 30126044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 2785371 - 2785167
Alignment:
Q  2 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 101  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  2785371 ggtgtttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 2785272  T
Q  102 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2785271 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 2785172  T
Q  202 caaca 206  Q
    |||||    
T  2785171 caaca 2785167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 31401939 - 31402146
Alignment:
Q  2 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 101  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||    
T  31401939 ggtgtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctttacattaggcttaggctgttttgttgttgttagc 31402038  T
Q  102 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  31402039 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccgaattca 31402138  T
Q  202 caacaaaa 209  Q
    ||||||||    
T  31402139 caacaaaa 31402146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 31397082 - 31397287
Alignment:
Q  2 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 101  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| ||    
T  31397082 ggtgtttgtttgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctttacattaggcttaggatgttttgttgttgttagc 31397181  T
Q  102 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  31397182 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccgaattca 31397281  T
Q  202 caacaa 207  Q
    ||||||    
T  31397282 caacaa 31397287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 33791312 - 33791107
Alignment:
Q  2 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 101  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||||||| ||    
T  33791312 ggtgtttgttcttttccttttatcgtttatcttgtatgcttgttagctctatatgtggttttgctatacattaggcttaggctgttttgttgttgttagc 33791213  T
Q  102 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33791212 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattgatgtgaaggttcattagttgagccggattca 33791113  T
Q  202 caacaa 207  Q
    ||||||    
T  33791112 caacaa 33791107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 2 - 207
Target Start/End: Complemental strand, 33768175 - 33767970
Alignment:
Q  2 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 101  Q
    ||||||||||| |||  |||||||||||||| ||||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||||||| ||    
T  33768175 ggtgtttgttcttttccttttatcgtttatcctgtatgcttgttagctctatatgtggttttgctatacattaggcttaggctgttttgttgttgttagc 33768076  T
Q  102 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 201  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33768075 ttggaggtcatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattgatgtgaaggttcattagttgagccggattca 33767976  T
Q  202 caacaa 207  Q
    ||||||    
T  33767975 caacaa 33767970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 37561551 - 37561740
Alignment:
Q  20 tttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgca 117  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||| |||||||||||||||||     
T  37561551 tttaccgtttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttggaggccatttgct 37561650  T
Q  118 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattcacaaca 206  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| || ||||||||| ||||||||||||||    
T  37561651 ctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtgaaggtttgattagttgaaccggattcacaaca 37561740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 37556729 - 37556919
Alignment:
Q  20 tttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgca 117  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||  || | |||||||||||||||||||| |||||||||||||||||     
T  37556729 tttaccgtttatcttgtttatgcttgttagctcttagtgtggttttgctatacacaagtcataggctgttttgttgttgttagcttggaggccatttgct 37556828  T
Q  118 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaag-gttcattagttgagccggattcacaacaa 207  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||  || ||||||||| |||||||||||||||    
T  37556829 ctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtgaagatttgattagttgaaccggattcacaacaa 37556919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 28807678 - 28807868
Alignment:
Q  19 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggtttt--gctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatt 113  Q
    ||||| ||||||||||||  |||||||||||||||| | ||||||||  |||||||| ||| |||||| |||||| ||||||||||||||||| ||||||    
T  28807678 ttttaccgtttatcttgtttatgcttgttagctctttgagtggttttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatt 28807775  T
Q  114 tgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattcacaaca 206  Q
    ||  ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||    
T  28807776 tgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttcattagttgaaccggattcacaaca 28807868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 176
Target Start/End: Original strand, 1457290 - 1457423
Alignment:
Q  41 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 140  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| |||    
T  1457290 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctctt 1457389  T
Q  141 gctccacacatcattggtttattctcattggtgtga 176  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  1457390 gctccacacatcatt-gtttatt-tcattggtgtga 1457423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 41 - 176
Target Start/End: Complemental strand, 27444926 - 27444793
Alignment:
Q  41 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 140  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| | ||||||||||||||||||| ||||||| |||||| ||||| | ||||| |||    
T  27444926 ttgttatctctttgtgtggttttgctatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctctt 27444827  T
Q  141 gctccacacatcattggtttattctcattggtgtga 176  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  27444826 gctccacacatcatt-gtttatt-tcattggtgtga 27444793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 176
Target Start/End: Complemental strand, 27449770 - 27449637
Alignment:
Q  41 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 140  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| | ||||||||||||||||||| ||||||| |||||| ||||| | ||||| |||    
T  27449770 ttgttatctctttgtgtggttttgctatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctctt 27449671  T
Q  141 gctccacacatcattggtttattctcattggtgtga 176  Q
    |||||||| |||||| ||||||| ||||||||||||    
T  27449670 gctccacatatcatt-gtttatt-tcattggtgtga 27449637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 43592235 - 43592120
Alignment:
Q  41 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 140  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| |||    
T  43592235 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctctt 43592136  T
Q  141 gctccacacatcattg 156  Q
    ||||||||||||||||    
T  43592135 gctccacacatcattg 43592120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 176
Target Start/End: Complemental strand, 43598680 - 43598547
Alignment:
Q  41 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 140  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| ||| |||  ||||| ||||| | ||||| |||    
T  43598680 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctctt 43598581  T
Q  141 gctccacacatcattggtttattctcattggtgtga 176  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  43598580 gctccacacatcatt-gtttatt-tcattggtgtga 43598547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 176
Target Start/End: Complemental strand, 43604172 - 43604039
Alignment:
Q  41 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 140  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| ||| |||  ||||| ||||| | ||||| |||    
T  43604172 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctctt 43604073  T
Q  141 gctccacacatcattggtttattctcattggtgtga 176  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  43604072 gctccacacatcatt-gtttatt-tcattggtgtga 43604039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 176
Target Start/End: Complemental strand, 43609664 - 43609531
Alignment:
Q  41 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 140  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| ||| |||  ||||| ||||| | ||||| |||    
T  43609664 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctctt 43609565  T
Q  141 gctccacacatcattggtttattctcattggtgtga 176  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  43609564 gctccacacatcatt-gtttatt-tcattggtgtga 43609531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 15044630 - 15044507
Alignment:
Q  54 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 153  Q
    |||||||||||||||||| ||| ||  |||||||||||||||||| | |||||| |||||||  ||||| ||||| | ||||||||||||| |||| |||    
T  15044630 gtgtggttttgctatacactagtctagggctgttttgttgttgttggtttggagaccatttgttctcattgattaccactatcacttgctctacacgtca 15044531  T
Q  154 ttggtttattctcattggtgtgaaggtt 181  Q
    |||   |||| |||||||||||||||||    
T  15044530 ttg---tatt-tcattggtgtgaaggtt 15044507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 30631349 - 30631249
Alignment:
Q  55 tgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcat 154  Q
    |||| |||||||||||| ||| ||  |||||||||||||||||| ||||| |  |||||||  ||||||||||| | ||||| |||||||||||||||||    
T  30631349 tgtgattttgctatacactagtctagggctgttttgttgttgtt-gcttgaaaaccatttgttctcatagattaccactatctcttgctccacacatcat 30631251  T
Q  155 tg 156  Q
    ||    
T  30631250 tg 30631249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 24135794 - 24135742
Alignment:
Q  55 tgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggag 107  Q
    |||||| ||||| |||| ||| ||  |||||||||||||||||||||||||||    
T  24135794 tgtggtgttgctctacactagtctagggctgttttgttgttgtttgcttggag 24135742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 206
Target Start/End: Original strand, 2340 - 2544
Alignment:
Q  2 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 101  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  2340 ggtgtttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 2439  T
Q  102 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 201  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2440 ttggaggccatttgcactcatggattatctttatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattca 2539  T
Q  202 caaca 206  Q
    |||||    
T  2540 caaca 2544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 10207931 - 10207724
Alignment:
Q  1 tggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt 99  Q
    |||||||||||| |||  ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  10207931 tggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgtta 10207832  T
Q  100 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10207831 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 10207732  T
Q  200 cacaacaa 207  Q
    ||||||||    
T  10207731 cacaacaa 10207724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 2677175 - 2677386
Alignment:
Q  1 tggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt 99  Q
    |||||||||||| |||  ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  2677175 tggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgtta 2677274  T
Q  100 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggat 198  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2677275 gcttggaggccatttgctctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttcattagttgagccggat 2677374  T
Q  199 tcacaacaaaaa 210  Q
    ||||||||||||    
T  2677375 tcacaacaaaaa 2677386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 2673019 - 2673230
Alignment:
Q  1 tggtgtttgttcgttttgttttatcgtttatcttgt-atgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt 99  Q
    |||||||||||| |||  ||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  2673019 tggtgtttgttcttttcttttcatggtttatcttgttatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgtta 2673118  T
Q  100 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggat 198  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2673119 gcttggaggccatttactctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttcattagttgagccggat 2673218  T
Q  199 tcacaacaaaaa 210  Q
    ||||||||||||    
T  2673219 tcacaacaaaaa 2673230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 8517088 - 8516886
Alignment:
Q  6 tttgttcgttttgttttatcgttt-atcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttg 104  Q
    ||||||||||||  |||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||    
T  8517088 tttgttcgttttcgtttatcgttttatcttgtatgcttgttaactcttagtgtggttgtgctacacattaggcttaggctgttttgttgttgttagcttg 8516989  T
Q  105 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 204  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8516988 gaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 8516889  T
Q  205 caa 207  Q
    |||    
T  8516888 caa 8516886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 8512208 - 8512007
Alignment:
Q  6 tttgttcgttttgttttatcgttt-atcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttg 104  Q
    ||||||||||||  |||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||||||| |||||    
T  8512208 tttgttcgttttcgtttatcgttttatcttgtatgcttgttaactcttagtgtggttgtgctacacattaggcttaggctgttttgttgttgttagcttg 8512109  T
Q  105 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 204  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8512108 gaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 8512009  T
Q  205 ca 206  Q
    ||    
T  8512008 ca 8512007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 32475476 - 32475276
Alignment:
Q  6 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || | |||    
T  32475476 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagtttg 32475378  T
Q  105 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 204  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32475377 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 32475278  T
Q  205 ca 206  Q
    ||    
T  32475277 ca 32475276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 32480334 - 32480132
Alignment:
Q  6 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttg-tttgcttg 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || | |||    
T  32480334 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagtttg 32480236  T
Q  105 gaggccatttgcactcatagattatctctatcacttgctccacacatcattgg-tttattctcattggtgtgaaggttcattagttgagccggattcaca 203  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32480235 gaggccatttgcactcatagattacctctatctcttgctccacacatctttggatttattctcattggtgtgaaggttcattagttgagccggattcaca 32480136  T
Q  204 acaa 207  Q
    ||||    
T  32480135 acaa 32480132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 148
Target Start/End: Complemental strand, 24968103 - 24967957
Alignment:
Q  2 ggtgtttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgc 101  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  24968103 ggtgtttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagc 24968004  T
Q  102 ttggaggccatttgcactcatagattatctctatcacttgctccaca 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24968003 ttggaggccatttgcactcatagattatctctatcacttgctccaca 24967957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 18656410 - 18656224
Alignment:
Q  20 tttatcgtttatcttgtatgctt-gttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgca 117  Q
    |||| |||||||||||| ||||| |||||||||| |||||||||| ||||||| ||| |||||| |||||||||||||||| |||||||| |||||||      
T  18656410 tttaccgtttatcttgtttgctttgttagctctttgtgtggtttttctatacactag-cttagggctgttttgttgttgttagcttggagaccatttgtt 18656312  T
Q  118 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaaaaa 210  Q
    ||||| ||||| | | |||||||||||||||||||||||   |||| |||||||||||||||||  ||  | || ||||||||||||||||||    
T  18656311 ctcattgattaccaccatcacttgctccacacatcattg---tattttcattggtgtgaaggtttctt--tggaaccggattcacaacaaaaa 18656224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 22173330 - 22173458
Alignment:
Q  48 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 147  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  22173330 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 22173429  T
Q  148 acatcattggtttattctcattggtgtgaag 178  Q
    |||||||| ||||||| ||||||||||||||    
T  22173430 acatcatt-gtttatt-tcattggtgtgaag 22173458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 2671725 - 2671836
Alignment:
Q  41 ttgttagctcttagtgtggttttgctatacattagacttaggctgtttt-gttgttgtttgcttggaggccatttgcactcatagattatctctatcact 139  Q
    |||||| ||||| |||||||||| || |||| ||||||  ||||||||| |||||||||||||||||| |||||||  ||||||||||| | ||||| ||    
T  2671725 ttgttatctctttgtgtggtttttctctacactagactagggctgtttttgttgttgtttgcttggagaccatttg-gctcatagattaccactatctct 2671823  T
Q  140 tgctccacacatc 152  Q
    |||||||||||||    
T  2671824 tgctccacacatc 2671836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 7167201 - 7167092
Alignment:
Q  41 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 140  Q
    |||||| ||||| ||||||||||||| |||| ||| ||  |||||||||||||||| |||||||||  ||||||   ||||||||||| | ||||| |||    
T  7167201 ttgttatctctttgtgtggttttgctctacactagtctagggctgttttgttgttg-ttgcttggaaaccattt-tgctcatagattaccactatctctt 7167104  T
Q  141 gctccacacatc 152  Q
    ||||||||||||    
T  7167103 gctccacacatc 7167092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 28503995 - 28504108
Alignment:
Q  41 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 140  Q
    |||||| ||||| |||||||||||||||||| ||| |   |||||||||||||||| |||||||||  ||||||   ||||||||||||| ||| |  ||    
T  28503995 ttgttatctctttgtgtggttttgctatacactagtcaagggctgttttgttgttg-ttgcttggaaaccattt-ttctcatagattatcactacctttt 28504092  T
Q  141 gctccacacatcattg 156  Q
    ||||||||||||||||    
T  28504093 gctccacacatcattg 28504108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 8739249 - 8739314
Alignment:
Q  86 ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 152  Q
    |||||||||| ||||||||||  ||||||| |||||||||||| | ||||  |||||||||||||||    
T  8739249 ttttgttgttatttgcttggaaaccatttg-actcatagattaccactatttcttgctccacacatc 8739314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 9091487 - 9091552
Alignment:
Q  86 ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 152  Q
    |||||||||| ||||||||||  ||||||| |||||||||||| | ||||  |||||||||||||||    
T  9091487 ttttgttgttatttgcttggaaaccatttg-actcatagattaccactatttcttgctccacacatc 9091552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 182058 - 182261
Alignment:
Q  6 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  182058 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 182156  T
Q  105 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 204  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  182157 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 182256  T
Q  205 caaaa 209  Q
    |||||    
T  182257 caaaa 182261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 16880064 - 16879863
Alignment:
Q  6 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  16880064 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 16879966  T
Q  105 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 204  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16879965 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 16879866  T
Q  205 caa 207  Q
    |||    
T  16879865 caa 16879863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 16884920 - 16884719
Alignment:
Q  6 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  16884920 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 16884822  T
Q  105 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 204  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16884821 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 16884722  T
Q  205 caa 207  Q
    |||    
T  16884721 caa 16884719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 24261417 - 24261618
Alignment:
Q  6 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  24261417 tttgttcgttttcttttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 24261515  T
Q  105 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 204  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  24261516 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgaaccggattcacaa 24261615  T
Q  205 caa 207  Q
    |||    
T  24261616 caa 24261618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 6 - 206
Target Start/End: Original strand, 24266296 - 24266496
Alignment:
Q  6 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgttt-gcttg 104  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| || |||||    
T  24266296 tttgttcgttttcctttatcgtttatcttgtatgcttgttagctcttagtgtggatttgct-tacattaggcttaggctgttttgttgttgattagcttg 24266394  T
Q  105 gaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaa 204  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24266395 gaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattcacaa 24266494  T
Q  205 ca 206  Q
    ||    
T  24266495 ca 24266496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 21812339 - 21812532
Alignment:
Q  14 ttttgttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggcc 110  Q
    |||| ||||| ||||||||||||  |||||||||| ||||| |||||||||||||||||| ||| |||||| |||||| ||||||||| ||||||| |||    
T  21812339 ttttcttttaccgtttatcttgtttatgcttgttaactctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgttagcttggaagcc 21812436  T
Q  111 atttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattcacaaca 206  Q
    |||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||  |||||||||||||    
T  21812437 atttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaatcggattcacaaca 21812532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 19992292 - 19992104
Alignment:
Q  19 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 115  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||  ||||||| ||||||||    
T  19992292 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtaagcttggaagccatttg 19992195  T
Q  116 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt-cattagttgagccggattcacaaca 206  Q
      ||||| ||||||| ||||||| ||||||||||||| |||||||||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  19992194 ttctcattgattatcactatcacctgctccacacatctttggtttatt-tcattggtgtgaaggttccattagttgaaccggattcacaaca 19992104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 24024451 - 24024594
Alignment:
Q  36 tatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctat 135  Q
    ||||||||||||||||| |||||||||||||||| | ||| | ||||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||    
T  24024451 tatgcttgttagctctttgtgtggttttgctatatactagtcataggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactat 24024550  T
Q  136 cacttgctccacacatcattggtttattctcattggtgtgaaggtt 181  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  24024551 cacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 24024594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 181
Target Start/End: Complemental strand, 12396861 - 12396730
Alignment:
Q  48 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 147  Q
    ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  12396861 ctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 12396762  T
Q  148 acatcattggtttattctcattggtgtgaaggtt 181  Q
    |||||||| ||||||| |||||||||||||||||    
T  12396761 acatcatt-gtttatt-tcattggtgtgaaggtt 12396730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 181
Target Start/End: Complemental strand, 12406281 - 12406150
Alignment:
Q  48 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 147  Q
    ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  12406281 ctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 12406182  T
Q  148 acatcattggtttattctcattggtgtgaaggtt 181  Q
    |||||||| ||||||| |||||||||||||||||    
T  12406181 acatcatt-gtttatt-tcattggtgtgaaggtt 12406150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 31109725 - 31109849
Alignment:
Q  54 gtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 152  Q
    |||||||||||||||||| |||  ||||| |||||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||| ||||||||    
T  31109725 gtgtggttttgctatacactag--ttagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctgcacacatc 31109822  T
Q  153 attggtttattctcattggtgtgaaggtt 181  Q
    ||| ||||||| |||||||||||||||||    
T  31109823 att-gtttatt-tcattggtgtgaaggtt 31109849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 4866667 - 4866548
Alignment:
Q  60 ttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtt 159  Q
    |||||||||||| ||| ||  | ||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||||| |||    
T  4866667 ttttgctatacactagtctaggactgttttgttgttgtttgcttggagaccatttgtcctcattgattaccactatctcttgctccacacatcatt-gtt 4866569  T
Q  160 tattctcattggtgtgaaggtt 181  Q
    |||| |||||||||||||||||    
T  4866568 tatt-tcattggtgtgaaggtt 4866548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 20357672 - 20357797
Alignment:
Q  28 ttatcttgtatgctt-gttagctcttagtgtggttttgctatacattagacttaggctgtttt-gttgttgtttgcttggaggccatttgcactcataga 125  Q
    ||||||||| ||||| |||| ||||| ||||||||||||| |||| ||| ||  ||||||||| ||||||||| |||||||| |||||||  ||||||||    
T  20357672 ttatcttgtttgctttgttatctctttgtgtggttttgctctacactagtctagggctgtttttgttgttgttagcttggagaccatttgg-ctcataga 20357770  T
Q  126 ttatctctatcacttgctccacacatc 152  Q
    ||| | ||||| |||||||||||||||    
T  20357771 ttaccactatctcttgctccacacatc 20357797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 2057871 - 2057806
Alignment:
Q  86 ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 152  Q
    |||||||||||||||||||||  ||||||| |||||||||||| | ||||| |||||||||||||||    
T  2057871 ttttgttgttgtttgcttggaaaccatttg-actcatagattaccactatctcttgctccacacatc 2057806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 43988580 - 43988762
Alignment:
Q  27 tttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagat 126  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  43988580 tttatcttgtatgcttgttagctcttagtgtggttgtgctatacattaggcttaggctgttttgttgttgttagcttggaagccatttgctctcatagat 43988679  T
Q  127 tatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaaaa 209  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43988680 tatctctatcacttgctccacacatcattgatttattctcattggcgtgaaggttcattagttgagccggattcacaacaaaa 43988762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 39445479 - 39445288
Alignment:
Q  19 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 115  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||    
T  39445479 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttg 39445382  T
Q  116 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaaaaa 210  Q
      | ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| || || || ||||||||||||||||||    
T  39445381 ttcacattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaacaaaaa 39445288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 25445195 - 25445382
Alignment:
Q  19 ttttatcgtttatcttgtat--gcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 115  Q
    ||||| |||||||||||| |  |||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||    
T  25445195 ttttaccgtttatcttgtttacgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttg 25445292  T
Q  116 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 206  Q
      ||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| || || || ||||||||||||||    
T  25445293 ttctcattgattatcactatcgcttgctccacacatcattggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaaca 25445382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 44023997 - 44024140
Alignment:
Q  36 tatgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgcactcatagattatctcta 134  Q
    ||||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||  ||||| ||||||| |||    
T  44023997 tatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttgttctcattgattatcacta 44024094  T
Q  135 tcacttgctccacacatcattggtttattctcattggtgtgaaggtt 181  Q
    ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  44024095 tcagttgctccacacatcattggtttatt-tcattggtgtgaaggtt 44024140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 1055117 - 1055304
Alignment:
Q  19 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 115  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||  ||||||| | ||||||    
T  1055117 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtaagcttggaagacatttg 1055214  T
Q  116 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 206  Q
      | ||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||  | || || ||||||||||||||    
T  1055215 ttcacattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgattgtagaaccggattcacaaca 1055304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 41386650 - 41386566
Alignment:
Q  96 gtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 181  Q
    |||||||||||| |||||||  ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41386650 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 41386566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 41398147 - 41398055
Alignment:
Q  88 ttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 181  Q
    |||||||||||||||||||| |||| ||  ||||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  41398147 ttgttgttgtttgcttggagaccatatgttctcattgattatcactatcacttgctccacacataattggtttatt-tcattggtgtgaaggtt 41398055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 19349270 - 19349069
Alignment:
Q  6 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttgg 105  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  19349270 tttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttgg 19349171  T
Q  106 aggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattcacaa 204  Q
    ||||||||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||||||||    
T  19349170 aggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaaccggattcacaa 19349072  T
Q  205 caa 207  Q
    |||    
T  19349071 caa 19349069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 19344412 - 19344212
Alignment:
Q  6 tttgttcgttttgttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttgg 105  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  19344412 tttgttcttttccttttatcgtttatcttgtatgcttgttagctcttagtgtggttttgctatacattaggcttaggctgttttgttgttgttagcttgg 19344313  T
Q  106 aggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggattcacaa 204  Q
    ||||||||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||||||||    
T  19344312 aggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaaccggattcacaa 19344214  T
Q  205 ca 206  Q
    ||    
T  19344213 ca 19344212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 54 - 206
Target Start/End: Complemental strand, 32246728 - 32246577
Alignment:
Q  54 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 153  Q
    |||||||||||||||||| ||| ||  | |||||||||||||||| |||||||| |||||||  ||||||||||| | ||||||||||||||||||||||    
T  32246728 gtgtggttttgctatacactagtctaggactgttttgttgttgttagcttggagaccatttgttctcatagattaccactatcacttgctccacacatca 32246629  T
Q  154 ttggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 206  Q
    |||||||||| |||||||||||||||||  || || || ||||||||||||||    
T  32246628 ttggtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaaca 32246577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 39812129 - 39812255
Alignment:
Q  54 gtgtggttttgctatacattagactta-ggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatc 152  Q
    |||||||||||||||||| ||| |||| |||||||||||||||||| |||||||| |||||||  ||||| ||||||| |||||||||||||||||||||    
T  39812129 gtgtggttttgctatacactag-cttagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatc 39812227  T
Q  153 attggtttattctcattggtgtgaaggtt 181  Q
     |||||||||| |||||||||||||||||    
T  39812228 tttggtttatt-tcattggtgtgaaggtt 39812255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 44312759 - 44312887
Alignment:
Q  48 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 147  Q
    ||||| |||||||||||||||||| | | ||  ||| | ||||||||||||||||||||| |||||||  ||||| ||||| | ||||||||||||||||    
T  44312759 ctctttgtgtggttttgctatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccac 44312858  T
Q  148 acatcattggtttattctcattggtgtgaag 178  Q
    |||||||| ||||||| ||||||||||||||    
T  44312859 acatcatt-gtttatt-tcattggtgtgaag 44312887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 9296540 - 9296651
Alignment:
Q  41 ttgttagctcttagtgtggttttgctatacattagacttaggctg-ttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcact 139  Q
    |||||| ||||| ||||||||||||| |||| ||||||  ||||| |||||||||||||||||||||  ||||||   ||||||||||| | ||| |  |    
T  9296540 ttgttatctctttgtgtggttttgctctacactagactagggctgtttttgttgttgtttgcttggaaaccattt-tgctcatagattaccactaccttt 9296638  T
Q  140 tgctccacacatc 152  Q
    |||||||||||||    
T  9296639 tgctccacacatc 9296651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 14291446 - 14291380
Alignment:
Q  41 ttgttagctcttagtgtggttttgctatacattagacttaggctg-ttttgttgttgtttgcttgga 106  Q
    |||||| ||||| ||||||||||||| |||||||| ||  ||||| |||||||||||||||||||||    
T  14291446 ttgttatctctttgtgtggttttgctctacattagtctagggctgtttttgttgttgtttgcttgga 14291380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 18855706 - 18855519
Alignment:
Q  19 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 115  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||    
T  18855706 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttg 18855609  T
Q  116 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 206  Q
      ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||  | || || ||||||||||||||    
T  18855608 ttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgcttgtagaaccggattcacaaca 18855519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 36 - 206
Target Start/End: Complemental strand, 3813986 - 3813816
Alignment:
Q  36 tatgcttgttagctcttagtgtggtttt-gctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctcta 134  Q
    ||||||||||||||||| |||||||||| || ||||| ||| ||  | ||||||||||||||||||||||||| |||||||| ||||| ||||| | |||    
T  3813986 tatgcttgttagctctttgtgtggtttttgcgatacactagtctaggactgttttgttgttgtttgcttggagaccatttgctctcattgattaccacta 3813887  T
Q  135 tcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 206  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||  || || || ||||||||||||||    
T  3813886 tcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaaca 3813816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 207
Target Start/End: Original strand, 9224542 - 9224699
Alignment:
Q  48 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 147  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  9224542 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 9224641  T
Q  148 acatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 207  Q
    |||||||| ||||||| |||||||||||||||||  ||  |||| |||||||||||||||    
T  9224642 acatcatt-gtttatt-tcattggtgtgaaggttttttttttgaaccggattcacaacaa 9224699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 5732640 - 5732454
Alignment:
Q  20 tttatcgtttatcttgtatgctt-gttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgca 117  Q
    |||| |||||||||||| ||||| |||||||||| |||||||||| ||||||| ||| |||||| |||||||||||||||| |||||||| |||||||      
T  5732640 tttaccgtttatcttgtttgctttgttagctctttgtgtggttttactatacactag-cttagggctgttttgttgttgttagcttggagaccatttgtt 5732542  T
Q  118 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaaaaa 210  Q
    ||||| ||||| | | |||||||||||||||||||||||   |||| |||||||||||||||||  ||  | || ||||||||||||||||||    
T  5732541 ctcattgattaccaccatcacttgctccacacatcattg---tattttcattggtgtgaaggtttctt--tggaaccggattcacaacaaaaa 5732454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 9229329 - 9229460
Alignment:
Q  48 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 147  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  9229329 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 9229428  T
Q  148 acatcattggtttattctcattggtgtgaaggtt 181  Q
    |||||||| ||||||| |||||||||||||||||    
T  9229429 acatcatt-gtttatt-tcattggtgtgaaggtt 9229460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 45347959 - 45348109
Alignment:
Q  54 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 153  Q
    ||||||||||||| |||| ||| ||  | |||||||||||||||| ||||| || |||||||  ||||||||||| | ||||||||||||||||||||||    
T  45347959 gtgtggttttgctttacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatca 45348058  T
Q  154 ttggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 206  Q
    || ||||||| |||||||||||||||||  || || || ||||||||||||||    
T  45348059 tt-gtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaaca 45348109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 45357438 - 45357588
Alignment:
Q  54 gtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatca 153  Q
    ||||||||||||| |||| ||| ||  | |||||||||||||||| ||||| || |||||||  ||||||||||| | ||||||||||||||||||||||    
T  45357438 gtgtggttttgctttacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatca 45357537  T
Q  154 ttggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 206  Q
    || ||||||| |||||||||||||||||  || || || ||||||||||||||    
T  45357538 tt-gtttatt-tcattggtgtgaaggtttctttgtagaaccggattcacaaca 45357588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 56146840 - 56146974
Alignment:
Q  41 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 140  Q
    |||||| ||||| |||||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| ||| |||  ||||| ||||| | ||||| |||    
T  56146840 ttgttatctctttgtgtggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctctt 56146939  T
Q  141 gctccacacatcattggtttattctcattggtgtgaa 177  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  56146940 gctccacacatcatt-gtttatt-tcattggtgtgaa 56146974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 176
Target Start/End: Complemental strand, 51520413 - 51520280
Alignment:
Q  41 ttgttagctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcactt 140  Q
    |||||| ||||| || ||||||||||||||| ||| ||  ||||| ||||||||||||||||||||| |||||||  ||||| ||||| | ||||| |||    
T  51520413 ttgttatctctttgtatggttttgctatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctctt 51520314  T
Q  141 gctccacacatcattggtttattctcattggtgtga 176  Q
    ||||||||||||||| ||||||| ||||||||||||    
T  51520313 gctccacacatcatt-gtttatt-tcattggtgtga 51520280  T

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Target: scaffold0464 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 342 - 154
Alignment:
Q  19 ttttatcgtttatcttgt--atgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttg 115  Q
    ||||| ||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||| |||||| ||||||||||||||||| ||||||||    
T  342 ttttaccgtttatcttgtttatgcttgttagctctttgtgtggttttgctatacactag-cttagggctgttt-gttgttgtttgcttggaagccatttg 245  T
Q  116 cactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 207  Q
      ||||| ||||||| | ||||||||||||||||||| |||||||||| |||||||||||||||||| || || || |||||||||||||||    
T  244 ttctcattgattatcaccatcacttgctccacacatctttggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaacaa 154  T

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Target: scaffold0355 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 9764 - 9907
Alignment:
Q  36 tatgcttgttagctcttagtgtggttttgctatacattagacttagg-ctgttttgttgttgtttgcttggaggccatttgcactcatagattatctcta 134  Q
    ||||||||||||||||| |||||||||||||||| | ||| |||||| |||||||||||||||||| |||||| |||||||| ||||| ||||||| |||    
T  9764 tatgcttgttagctctt-gtgtggttttgctatatactag-cttagggctgttttgttgttgtttggttggagaccatttgctctcattgattatcacta 9861  T
Q  135 tcacttgctccacacatcattggtttattctcattggtgtgaaggtt 181  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  9862 tcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 9907  T

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Target: scaffold0355; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 13 - 148
Alignment:
Q  36 tatgcttgttagctcttagtgtggttttgctatacattagactta-ggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctcta 134  Q
    |||||||||||||||   |||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||| |||||||| ||||| |||      ||    
T  13 tatgcttgttagctc---gtgtggttttgctatacactag-cttagggctgttttgttgttgtttacttggagaccatttgctctcattgat------ta 102  T
Q  135 tcacttgctccacacatcattggtttattctcattggtgtgaaggtt 181  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||    
T  103 tcacttgctccacacatcattggtttatt-taattggtgtgaaggtt 148  T

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Target: scaffold0135 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 35197 - 35328
Alignment:
Q  48 ctcttagtgtggttttgctatacattagacttaggctgttttgttgttgtttgcttggaggccatttgcactcatagattatctctatcacttgctccac 147  Q
    ||||| |||||||||||||||||| ||| ||  ||||||||||||||||||||||||||| |||||||  ||||| ||||| | ||||| ||||||||||    
T  35197 ctctttgtgtggttttgctatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccac 35296  T
Q  148 acatcattggtttattctcattggtgtgaaggtt 181  Q
    |||||||| ||||||| |||||||||||||||||    
T  35297 acatcatt-gtttatt-tcattggtgtgaaggtt 35328  T

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Target: scaffold0127 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 34132 - 34216
Alignment:
Q  96 gtttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 181  Q
    |||||||||||| |||||||  ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34132 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 34216  T

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Target: scaffold0777 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 6341 - 6292
Alignment:
Q  158 tttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6341 tttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 6292  T

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Target: scaffold0479 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 13228 - 13140
Alignment:
Q  118 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 207  Q
    ||||| ||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||||| || || || |||||||||||||||    
T  13228 ctcattgattatcactatcacttgctccacatatctttggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaacaa 13140  T

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