View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0304_1D_low_29 (Length: 232)
Name: NF0304_1D_low_29
Description: NF0304_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304_1D_low_29 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 29607643 - 29607421
Alignment:
| Q |
10 |
atgaatggacagaggaagaggactgttgtaatgatgtaagttgctcaatttaagcgatacgacttttgtttgatatgattctgtcaatccctatacatct |
109 |
Q |
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| T |
29607643 |
atgaatggacagaggaagaggactgttgtaatgacgtaagttgctcaatttaagcgatacgacttttgtttgatatgattctgtcaatccctatacatct |
29607544 |
T |
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| Q |
110 |
gctcatcacttggaactccctgtggtcaattttttaagcaaaagttgaactgtatttggtcaaaaattcatattattcaagacccaagggagtaaatatt |
209 |
Q |
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| T |
29607543 |
gctcatcacttggaactccctgtggtcaattttttaagcaaaagttgaactgtatttgctcaaaaatttatattattcaagacccaagggagtaaatatt |
29607444 |
T |
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| Q |
210 |
attttgtgaatggtgaaaattga |
232 |
Q |
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| T |
29607443 |
attttgtgaatggtgaaaattga |
29607421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 55353290 - 55353510
Alignment:
| Q |
10 |
atgaatggacagaggaagaggactgttgtaatgatgtaagttgctcaatttaagcgatacgacttttgtttgatatgattctgtcaatccctatacatct |
109 |
Q |
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| T |
55353290 |
atgaataggcagaggaagaagacttttgtaatgacgtaagttgctcaatctgtgcgatgaggcttttgtgtgatatgattctgtcaatccctatacatct |
55353389 |
T |
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| Q |
110 |
gctcatcacttggaactccctgtggtcaattttttaagca-aaagttgaactgtatttggtcaaaaattcatattattcaagacccaagggagtaaatat |
208 |
Q |
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| T |
55353390 |
tctcttcatttgaaactccctatggtca---ttttaagcattaagttgaactgtatttggtaaaaaaattatattgttcaagaccggagggagtgcatat |
55353486 |
T |
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| Q |
209 |
tattttgtgaatggtgaaaattga |
232 |
Q |
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| T |
55353487 |
ttatttgtgaatggtgaaaattga |
55353510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 36404338 - 36404125
Alignment:
| Q |
10 |
atgaatggacagaggaagaggactgttgtaatgatgtaagttgctcaatttaagcgatacgacttttgtttgatatgattctgtcaatccctatacatct |
109 |
Q |
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| T |
36404338 |
atgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctatgcgatgaggcttttgtgtgatatgattctgtcaatccctatacatct |
36404239 |
T |
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| Q |
110 |
gctcatcacttggaactccctgtggtcaattttttaagca-aaagttgaactgtatttggtcaaaaattcatattattcaagacccaagggagtaaatat |
208 |
Q |
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||| ||||||||||||||| |||||| ||||||||| ||||||||| ||||||||| ||||| | ||||| ||||||||| ||||||| |||| |
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| T |
36404238 |
tctctccacttggaactccctatggtca---ttttaagcattaagttgaacagtatttggtaaaaaaattatattgttcaagaccggagggagtgcatat |
36404142 |
T |
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| Q |
209 |
tattttgtgaatggtga |
225 |
Q |
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| T |
36404141 |
ttatttgtgaatggtga |
36404125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 18446573 - 18446354
Alignment:
| Q |
10 |
atgaatggacagaggaagaggactgttgtaatgatgtaagttgctcaatttaagcgatacgacttttgtttgatatgattctgtcaatccctatacatct |
109 |
Q |
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|||||| | ||||||||||||||| ||||||||| |||||||||||||| | ||||| | | ||||| |||||||||||||||||||||||||||||| |
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| T |
18446573 |
atgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctgtgcgatgaggc-tttgtgtgatatgattctgtcaatccctatacatct |
18446475 |
T |
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| Q |
110 |
gctcatcacttggaactccctgtggtcaattttttaagca-aaagttgaactgtatttggtcaaaaattcatattattcaagacccaagggagtaaatat |
208 |
Q |
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||| ||||||||||||| || |||||| ||||||||| |||||||| |||||||||| ||||||| ||||| ||||||||| ||||||| |||| |
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| T |
18446474 |
tctcttcacttggaactctctatggtca---ttttaagcattaagttgaattgtatttggtaaaaaatttatattgttcaagaccggagggagtgcatat |
18446378 |
T |
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| Q |
209 |
tattttgtgaatggtgaaaattga |
232 |
Q |
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| T |
18446377 |
ttatttgtgaatggtgaaaattga |
18446354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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