View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0304_1D_low_4 (Length: 476)
Name: NF0304_1D_low_4
Description: NF0304_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304_1D_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 43709444 - 43709897
Alignment:
| Q |
1 |
aacttttcattcttaaagcaaattgaacgtgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccataaaatttgaagatccttgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43709444 |
aacttttcattcttaaagcaaattgaacatgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccataaaatttgaagatccttgca |
43709543 |
T |
|
| Q |
101 |
agcttgatcattcatgtctttcgcctttctagtcttaaggaaataaagaactctgcccaaagcggtgaaagcccattcagtgaacctgcgacttctcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43709544 |
agcttgatcattcatgtctttcgcctttctagtcttaaggaaataaagaactctgcccaaagcggtgaaagcccattcagtgaacctgcgacttctcctc |
43709643 |
T |
|
| Q |
201 |
tgctgacactcaatgagtgaaggatgttgagaacatgctttctctagtagtggaacaaaatacgtttccacttgccctaaacccatgaaatccataagct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43709644 |
tgctgacactcaatgagtgaaggatgttgagaacatgctttctctagtagtggaacaaaatacgtttccacttgccctaaacccatgaaatccataagct |
43709743 |
T |
|
| Q |
301 |
caccaattgagtatttgaaaaattccatgtcaatgtctcttgtaggctcagtacaaactaatataggaaattcggaaagagattccagatttgggacttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43709744 |
caccaattgagtatttgaaaaattccatgtcaatgtctcttgtaggctcagtacgaactaatataggaaattcggaaagagattccagatttgggacttg |
43709843 |
T |
|
| Q |
401 |
ggcttcaggccttgggacttccatatgtccaccactaatatgactaccatatgt |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43709844 |
ggcttcaggccttgggacttccatatgtccaccactaatatgactaccatatgt |
43709897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 3 - 197
Target Start/End: Original strand, 43695553 - 43695747
Alignment:
| Q |
3 |
cttttcattcttaaagcaaattgaacgtgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccataaaatttgaagatccttgcaag |
102 |
Q |
| |
|
||||| |||| ||||||| ||||||| || || || |||||||||| ||||||| ||| ||||||||||||||||||||| |||||||||||| |||| |
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|
| T |
43695553 |
cttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaacttgaagatccttacaag |
43695652 |
T |
|
| Q |
103 |
cttgatcattcatgtctttcgcctttctagtcttaaggaaataaagaactctgcccaaagcggtgaaagcccattcagtgaacctgcgacttctc |
197 |
Q |
| |
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| || |||||||||||| || | |||||||||||||||||||||| |||||| ||||| || | ||| ||| | ||||| ||| ||||||||||| |
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|
| T |
43695653 |
cctggtcattcatgtctctcacttttctagtcttaaggaaataaataactctccccaatgcagcgaatgccaaatcagtaaacttgcgacttctc |
43695747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 67 - 178
Target Start/End: Original strand, 43696407 - 43696518
Alignment:
| Q |
67 |
caagttcctcccataaaatttgaagatccttgcaagcttgatcattcatgtctttcgcctttctagtcttaaggaaataaagaactctgcccaaagcggt |
166 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||| ||||||||| | |||| |||| |||||||||||||||||||||||||||||||||| | | |
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|
| T |
43696407 |
caagttcctcccagaaaatttgaagatccttacaagctaaatcattcatatatttcaccttcctagtcttaaggaaataaagaactctgcccaaagggtt |
43696506 |
T |
|
| Q |
167 |
gaaagcccattc |
178 |
Q |
| |
|
||| |||||||| |
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|
| T |
43696507 |
gaacgcccattc |
43696518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 43691186 - 43691345
Alignment:
| Q |
22 |
attgaacgtgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccataaaatttgaagatccttgc---aagcttgatcattcatgtc |
118 |
Q |
| |
|
||||||| ||| ||||||||||| || |||||| |||||| || |||||||||||| ||||||||||||||| | | ||| | |||||||| || |
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|
| T |
43691186 |
attgaacatgatactctagccaagacaaatcaaaaccaaatggctgaagttcctcccaaaaaatttgaagatccatactacaagataagtcattcatatc |
43691285 |
T |
|
| Q |
119 |
tttcgcctttctagtcttaaggaaataaagaactctgcccaaagcggtgaaagcccattc |
178 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
43691286 |
tttcccttttctagtcttaaggaaataaagaactctgcccaaagcagtgaacgcccattc |
43691345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 43707720 - 43707841
Alignment:
| Q |
1 |
aacttttcattcttaaagcaaattgaacgtgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccataaaatttgaagatccttgca |
100 |
Q |
| |
|
|||||||||||| ||||||| ||| ||| || |||||||||||| |||||||||| |||| ||||||||||||| |||||| || | |||||| || |
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|
| T |
43707720 |
aacttttcattcctaaagcacatttaacatggagctctagccaagtgagatcaaatctaaatttctcaagttcctcgtataaaactttagtatccttaca |
43707819 |
T |
|
| Q |
101 |
agcttgatcattcatgtctttc |
122 |
Q |
| |
|
|| ||| |||||||| |||||| |
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|
| T |
43707820 |
aggttggtcattcatatctttc |
43707841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 43696555 - 43696628
Alignment:
| Q |
228 |
tgagaacatgctttctctagtagtggaacaaaatacgtttccacttgccctaaacccatgaaatccataagctc |
301 |
Q |
| |
|
||||||||| ||| ||||| |||||||| |||| | |||| | ||| ||||||||| |||||||||||||||| |
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|
| T |
43696555 |
tgagaacatacttcctctaatagtggaataaaagccttttctatttgtcctaaacccttgaaatccataagctc |
43696628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 15827355 - 15827206
Alignment:
| Q |
3 |
cttttcattcttaaagcaaattgaacgtgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccataaaatttgaagatccttgcaag |
102 |
Q |
| |
|
||||| |||| ||||||| | ||||| || | |||||||||| | ||||||| |||| || | |||||||||||||||| |||||||||||| |||| |
|
|
| T |
15827355 |
ctttttattcctaaagcatagtgaacatgcgattctagccaagtaatatcaaatttaaatttcgctagttcctcccataaaacttgaagatccttacaag |
15827256 |
T |
|
| Q |
103 |
cttgatcattcatgtctttcgcctttctagtcttaaggaaataaagaact |
152 |
Q |
| |
|
|||| |||||||||||| |||| |||||||||||||||||||| |||||| |
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|
| T |
15827255 |
cttgttcattcatgtctctcgcttttctagtcttaaggaaatacagaact |
15827206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 308
Target Start/End: Original strand, 41126645 - 41126737
Alignment:
| Q |
216 |
agtgaaggatgttgagaacatgctttctctagtagtggaacaaaatacgtttccacttgccctaaacccatgaaatccataagctcaccaatt |
308 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||| ||||||||| | |||||||| ||||||||| |||||||||||||| |||||||| |
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|
| T |
41126645 |
agtgaaggatgatgagagcatgcttcctctagtagcggaacaaaagctttatccacttgtcctaaacccttgaaatccataagcacaccaatt |
41126737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 308
Target Start/End: Complemental strand, 41126605 - 41126520
Alignment:
| Q |
223 |
gatgttgagaacatgctttctctagtagtggaacaaaatacgtttccacttgccctaaacccatgaaatccataagctcaccaatt |
308 |
Q |
| |
|
|||| ||||| ||||||| ||||||||| |||||||| |||||||||| ||||||||| |||||||||||||| |||||||| |
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|
| T |
41126605 |
gatgatgagagcatgcttcctctagtagcagaacaaaagctttttccacttgtcctaaacccttgaaatccataagcacaccaatt |
41126520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 41126455 - 41126506
Alignment:
| Q |
94 |
ccttgcaagcttgatcattcatgtctttcgcctttctagtcttaaggaaata |
145 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
41126455 |
ccttacaagcttgctcattcatatctttcgcctttcctgtcttaaggaaata |
41126506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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