View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0304_1D_low_5 (Length: 430)

Name: NF0304_1D_low_5
Description: NF0304_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0304_1D_low_5
NF0304_1D_low_5
[»] chr4 (2 HSPs)
chr4 (22-430)||(50610826-50611235)
chr4 (22-50)||(2222931-2222959)


Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 22 - 430
Target Start/End: Original strand, 50610826 - 50611235
Alignment:
Q  22 atttacacccctgaaatttgcgaataggccaacaaaagacgccaattttaaatgatatcaagcaactctgtccttctgttaacttggccaactgtcaaac 121  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  50610826 atttacacccctgaaatttgcgaataggccaacgacagacgccaattttaaatgatatcaggcaactcggtccttctgttaacttggccaactgtcaaac 50610925  T
Q  122 cagtaacggaaggactgagttgcctaatgtcgttcataattggagtca-ttttcttttcatgttcgtaaatttcagggtgtaaatgtttgacggctacaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50610926 cagtaacggaaggactgagttgcctaatgtcgttcataattggagtcatttttcttttcatgttcgtaaatttcagggtgtaaatgtttgacggctacaa 50611025  T
Q  221 tttcagggggaattggcgatttgctaattaacttatgttccctagttaccccctcaatttgaagaaaaccannnnnnngtcatgtgcaattgattgactt 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| ||||||||||||||    
T  50611026 tttcagggggaattggcgatttgctaattaacttatgttccctagttaccccctcaatttgaagaaaaccatttttttgtcatgtacaattgattgactt 50611125  T
Q  321 tgaattctgtgttttgttttgatgcagggtgattcaattcctaacctaattttgtagtttaggttaacaatcagggtgaggnnnnnnnttgcctctttgt 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  50611126 tgaattctgtgttttgttttgatgcagggtgattcaattcctaacctaattttgtagtttaggttaacaatcagggtgaggaaaaaaattgcctctttgt 50611225  T
Q  421 gagaggaaca 430  Q
    ||||||||||    
T  50611226 gagaggaaca 50611235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 2222959 - 2222931
Alignment:
Q  22 atttacacccctgaaatttgcgaataggc 50  Q
    |||||||||||||||||||||||||||||    
T  2222959 atttacacccctgaaatttgcgaataggc 2222931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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