View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0304_1D_low_6 (Length: 417)

Name: NF0304_1D_low_6
Description: NF0304_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0304_1D_low_6
NF0304_1D_low_6
[»] chr8 (3 HSPs)
chr8 (9-394)||(7007632-7008005)
chr8 (51-97)||(43806199-43806245)
chr8 (50-86)||(29096955-29096991)
[»] chr3 (3 HSPs)
chr3 (289-372)||(1237828-1237911)
chr3 (61-97)||(28525028-28525064)
chr3 (50-86)||(49636840-49636876)
[»] chr4 (1 HSPs)
chr4 (50-85)||(39765541-39765576)
[»] chr2 (2 HSPs)
chr2 (51-86)||(35198245-35198280)
chr2 (50-86)||(39459793-39459829)
[»] chr6 (3 HSPs)
chr6 (50-92)||(34625743-34625785)
chr6 (61-90)||(24974993-24975022)
chr6 (61-89)||(11539363-11539391)
[»] chr5 (2 HSPs)
chr5 (50-99)||(9878033-9878082)
chr5 (60-92)||(12969538-12969570)
[»] chr7 (1 HSPs)
chr7 (61-89)||(21174774-21174802)
[»] chr1 (1 HSPs)
chr1 (50-86)||(26462659-26462695)


Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 394
Target Start/End: Complemental strand, 7008005 - 7007632
Alignment:
Q  9 agacatggataccgtacacgttacttgcacgtcgaaacaacaataattaaagaaaatgaattaattgaatgtaatcacgtatgtcagtgcccaataccga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7008005 agacatggataccgtacacgttacttgcacgtcgaaacaacaataattaaagaaaatgaattaattgaatgtaatcacgtatgtcagtgcccaataccga 7007906  T
Q  109 cacatgttagacacttgtaacgccttcgatcataagtgtcagtgctacataatatgtatgcatcaaagtagtacataactatacacataacctcgactta 208  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||| |||||    
T  7007905 cacatgttagacacttgtaaagccttcgatcataagtgtcagtgctacataatatgtatgcatcaaagtagtacataac------------ctcaactta 7007818  T
Q  209 tctgctaaaatcctaggagcacaataagcatgaagaaattttcaaagttgagctacagacaaagaaaacacaacatgctatgcaaaacaaacctgaattc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7007817 tctgctaaaatcctaggagcacaataagcatgaagaaattttcaaagttgagctacagacaaagaaaacacaacatgctatgcaaaacaaacctgaattc 7007718  T
Q  309 tcaaagccacgccctgaagttgcgatttaagcttgtaaaacttttcaatctgatggcgagttctgataagatccttggccataacc 394  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7007717 tcaaagccacaccctgaagttgcgatttaagcttgtaaaacttttcaatctgatggcgagttctgataagatccttggccataacc 7007632  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 43806245 - 43806199
Alignment:
Q  51 ataattaaagaaaatgaattaattgaatgtaatcacgtatgtcagtg 97  Q
    |||||| ||||||||||||||||||||| ||||||| ||||| ||||    
T  43806245 ataatttaagaaaatgaattaattgaatataatcacatatgttagtg 43806199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 29096955 - 29096991
Alignment:
Q  50 aataattaaagaaaatgaattaattgaatgtaatcac 86  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  29096955 aataatttaagaaaataaattaattgaatgtaatcac 29096991  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 372
Target Start/End: Original strand, 1237828 - 1237911
Alignment:
Q  289 tgcaaaacaaacctgaattctcaaagccacgccctgaagttgcgatttaagcttgtaaaacttttcaatctgatggcgagttct 372  Q
    |||||||||||| |||||||||||||| || ||||||| ||| ||||||||| | ||||||| ||| || |||||| |||||||    
T  1237828 tgcaaaacaaacatgaattctcaaagcaactccctgaaattgtgatttaagcctataaaactattccatatgatggtgagttct 1237911  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 28525028 - 28525064
Alignment:
Q  61 aaaatgaattaattgaatgtaatcacgtatgtcagtg 97  Q
    |||||||||||||||||||||||||| | ||||||||    
T  28525028 aaaatgaattaattgaatgtaatcacatgtgtcagtg 28525064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 49636876 - 49636840
Alignment:
Q  50 aataattaaagaaaatgaattaattgaatgtaatcac 86  Q
    |||||||  ||||||||||||||||||||||||||||    
T  49636876 aataatttgagaaaatgaattaattgaatgtaatcac 49636840  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 39765541 - 39765576
Alignment:
Q  50 aataattaaagaaaatgaattaattgaatgtaatca 85  Q
    |||||||||| |||||||||||||||||||||||||    
T  39765541 aataattaaaaaaaatgaattaattgaatgtaatca 39765576  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 35198280 - 35198245
Alignment:
Q  51 ataattaaagaaaatgaattaattgaatgtaatcac 86  Q
    |||||| |||||||||||||||||||||||||||||    
T  35198280 ataatttaagaaaatgaattaattgaatgtaatcac 35198245  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 39459793 - 39459829
Alignment:
Q  50 aataattaaagaaaatgaattaattgaatgtaatcac 86  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  39459793 aataatttaaggaaatgaattaattgaatgtaatcac 39459829  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 34625743 - 34625785
Alignment:
Q  50 aataattaaagaaaatgaattaattgaatgtaatcacgtatgt 92  Q
    |||||||  |||||||||||||||||||||||||||| |||||    
T  34625743 aataatttgagaaaatgaattaattgaatgtaatcacatatgt 34625785  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 90
Target Start/End: Original strand, 24974993 - 24975022
Alignment:
Q  61 aaaatgaattaattgaatgtaatcacgtat 90  Q
    ||||||||||||||||||||||||||||||    
T  24974993 aaaatgaattaattgaatgtaatcacgtat 24975022  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 89
Target Start/End: Original strand, 11539363 - 11539391
Alignment:
Q  61 aaaatgaattaattgaatgtaatcacgta 89  Q
    |||||||||||||||||||||||||||||    
T  11539363 aaaatgaattaattgaatgtaatcacgta 11539391  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 9878082 - 9878033
Alignment:
Q  50 aataattaaagaaaatgaattaattgaatgtaatcacgtatgtcagtgcc 99  Q
    |||||||  |||| ||||||||||||||||||||||| | ||||||||||    
T  9878082 aataatttgagaatatgaattaattgaatgtaatcacttgtgtcagtgcc 9878033  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 12969538 - 12969570
Alignment:
Q  60 gaaaatgaattaattgaatgtaatcacgtatgt 92  Q
    ||||||||||||||||||||||||||| |||||    
T  12969538 gaaaatgaattaattgaatgtaatcacatatgt 12969570  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 89
Target Start/End: Complemental strand, 21174802 - 21174774
Alignment:
Q  61 aaaatgaattaattgaatgtaatcacgta 89  Q
    |||||||||||||||||||||||||||||    
T  21174802 aaaatgaattaattgaatgtaatcacgta 21174774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 26462695 - 26462659
Alignment:
Q  50 aataattaaagaaaatgaattaattgaatgtaatcac 86  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  26462695 aataatttaagaaaatgaaataattgaatgtaatcac 26462659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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