View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0304_1D_low_7 (Length: 355)

Name: NF0304_1D_low_7
Description: NF0304_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0304_1D_low_7
NF0304_1D_low_7
[»] chr8 (1 HSPs)
chr8 (1-338)||(7008101-7008438)
[»] chr2 (1 HSPs)
chr2 (96-337)||(18069413-18069654)


Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 7008101 - 7008438
Alignment:
Q  1 tctgttaatttataatttttaatctgtaatctgtaggattgattgatttattatagcttttaaaaatgacttcctgagattaattgtagactcttaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7008101 tctgttaatttataatttttaatctgtaatctgtaggattgattgatttattatagcttttaaaaatgacttcctgagattaattgtagacacttaaatc 7008200  T
Q  101 tactcaagcgatgggggacgctatgaaaggagttactaaagcaatgggtcaaatgaataggcagatgaatctgccttctttacagaagataatgcaagag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7008201 tactcaagcgatgggggacgctatgaaaggagttactaaagcaatgggtcaaatgaataggcagatgaatctaccttctttacagaagataatgcaagag 7008300  T
Q  201 tttgaaagacagaatgagaagatggaacttgtttctgaggtaatgggagatgcaattgatgatgctttagaaggtgatgaagaagaggaagagacagaag 300  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7008301 tttgaaaggcagaatgagaagatggaacttgtttctgaggtaatgggagatgcaattgatgatgctttagaaggtgatgaagaagaggaagagacagaag 7008400  T
Q  301 atcttgtgaatcaggttcttgatgagatcggaattgat 338  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7008401 atcttgtgaatcaggttcttgatgagatcggaattgat 7008438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 96 - 337
Target Start/End: Original strand, 18069413 - 18069654
Alignment:
Q  96 aaatctactcaagcgatgggggacgctatgaaaggagttactaaagcaatgggtcaaatgaataggcagatgaatctgccttctttacagaagataatgc 195  Q
    ||||| || ||||| ||||| || || |||||||| || || || || ||||| ||||||||||||||||||||| ||||   ||| ||||| || ||||    
T  18069413 aaatcaacacaagctatgggtgaggcgatgaaaggtgtgacgaaggccatggggcaaatgaataggcagatgaatttgccaaatttgcagaaaatcatgc 18069512  T
Q  196 aagagtttgaaagacagaatgagaagatggaacttgtttct-gaggtaatgggagatgcaattgatgatgctttagaaggtgatgaagaagaggaagaga 294  Q
    |||| || || ||||||||||| ||||||||| |||  | | || || |||||||| || || || |||||||| ||||| |||||||| || || || |    
T  18069513 aagatttcgagagacagaatgaaaagatggaa-ttgactatggaagtgatgggagacgccatagacgatgctttggaaggggatgaagaggaagaggaaa 18069611  T
Q  295 cagaagatcttgtgaatcaggttcttgatgagatcggaattga 337  Q
    |||| ||  | ||||| ||||| ||||||||||| ||||||||    
T  18069612 cagacgaattagtgaaccaggtccttgatgagattggaattga 18069654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 7820 times since January 2019
Visitors: 9542