View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0304_1D_low_9 (Length: 323)

Name: NF0304_1D_low_9
Description: NF0304_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0304_1D_low_9
NF0304_1D_low_9
[»] chr4 (15 HSPs)
chr4 (21-176)||(38147357-38147519)
chr4 (27-149)||(12639721-12639843)
chr4 (27-141)||(28103806-28103920)
chr4 (53-142)||(917683-917772)
chr4 (33-149)||(43012754-43012870)
chr4 (33-120)||(23643431-23643518)
chr4 (55-120)||(12639208-12639273)
chr4 (33-149)||(54714873-54714989)
chr4 (55-117)||(28104360-28104421)
chr4 (55-117)||(919115-919176)
chr4 (55-149)||(43013130-43013224)
chr4 (81-149)||(12629834-12629902)
chr4 (31-62)||(918651-918682)
chr4 (81-142)||(25163430-25163491)
chr4 (29-69)||(23037998-23038038)
[»] chr2 (9 HSPs)
chr2 (27-148)||(4329599-4329720)
chr2 (27-149)||(39865298-39865420)
chr2 (27-149)||(29770766-29770888)
chr2 (33-161)||(30674429-30674557)
chr2 (33-148)||(9074598-9074713)
chr2 (55-146)||(4330136-4330226)
chr2 (33-137)||(9914204-9914308)
chr2 (55-117)||(29771299-29771360)
chr2 (55-149)||(39864768-39864860)
[»] chr3 (10 HSPs)
chr3 (177-310)||(45395426-45395560)
chr3 (27-149)||(23566889-23567011)
chr3 (27-147)||(39737724-39737844)
chr3 (33-146)||(785770-785883)
chr3 (33-120)||(30385749-30385836)
chr3 (55-117)||(39737232-39737293)
chr3 (33-119)||(53153855-53153941)
chr3 (55-147)||(23566432-23566522)
chr3 (227-293)||(50470355-50470421)
chr3 (55-128)||(53153517-53153590)
[»] scaffold0064 (1 HSPs)
scaffold0064 (176-310)||(19917-20052)
[»] chr7 (11 HSPs)
chr7 (27-149)||(31166954-31167076)
chr7 (31-137)||(21971546-21971651)
chr7 (45-128)||(27596002-27596084)
chr7 (33-152)||(28750927-28751045)
chr7 (33-148)||(38916392-38916507)
chr7 (33-137)||(27230474-27230578)
chr7 (35-150)||(15577468-15577578)
chr7 (55-148)||(21972092-21972184)
chr7 (33-141)||(32741787-32741895)
chr7 (55-148)||(38916045-38916138)
chr7 (29-88)||(21948149-21948208)
[»] chr6 (7 HSPs)
chr6 (177-310)||(17922857-17922991)
chr6 (33-147)||(8700890-8701004)
chr6 (33-120)||(12307301-12307388)
chr6 (33-120)||(7727381-7727468)
chr6 (33-142)||(604984-605096)
chr6 (55-149)||(12306970-12307064)
chr6 (55-149)||(8701263-8701357)
[»] chr8 (7 HSPs)
chr8 (27-145)||(26759207-26759325)
chr8 (27-140)||(146644-146757)
chr8 (33-152)||(308301-308420)
chr8 (33-141)||(186682-186790)
chr8 (58-149)||(187049-187140)
chr8 (55-117)||(147190-147251)
chr8 (33-87)||(25277141-25277195)
[»] chr5 (7 HSPs)
chr5 (27-149)||(39121834-39121956)
chr5 (177-305)||(3623465-3623594)
chr5 (33-141)||(14393983-14394091)
chr5 (34-149)||(20983543-20983658)
chr5 (33-141)||(25672272-25672380)
chr5 (55-146)||(20983842-20983933)
chr5 (55-149)||(14394344-14394438)
[»] chr1 (2 HSPs)
chr1 (33-141)||(40888792-40888900)
chr1 (81-149)||(23269946-23270014)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 38147519 - 38147357
Alignment:
Q  21 gacatcaaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38147519 gacatcaaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatccatttatttattg 38147420  T
Q  121 actatttactgttccttatccagtgccc-------ctggttaacattgcccaaattattaaat 176  Q
    ||||||||||||||||||||||||||||       | ||||| ||||||||||||||||||||    
T  38147419 actatttactgttccttatccagtgcccgaaagcaccggttagcattgcccaaattattaaat 38147357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 12639721 - 12639843
Alignment:
Q  27 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||| |||||    
T  12639721 aaagagtattgaatatagcttttattatttttaattagttgacatattttacactttaattgaggtgaattaagtgagatccatttatttattgcctatt 12639820  T
Q  127 tactgttccttatccagtgcccc 149  Q
    || ||||||||||||||| ||||    
T  12639821 tattgttccttatccagtacccc 12639843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 28103920 - 28103806
Alignment:
Q  27 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||    
T  28103920 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactctaattgagatgaattaagtgagatccatttatttaatgattatt 28103821  T
Q  127 tactgttccttatcc 141  Q
    || ||||||||||||    
T  28103820 tattgttccttatcc 28103806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 917772 - 917683
Alignment:
Q  53 atttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcca 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||  |||||||||||||||||||| ||||| |||||||    
T  917772 atttttaattagttgacatatattacactttaattgagatgaattaacttagattcatttatttattgactatttattgttctttatcca 917683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 43012870 - 43012754
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 132  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||  || ||||||| |||||||||||| ||||||| |||    
T  43012870 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttatttattgtctatttattgt 43012771  T
Q  133 tccttatccagtgcccc 149  Q
    |||||||||||||||||    
T  43012770 tccttatccagtgcccc 43012754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 23643518 - 23643431
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 120  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||| |||| ||| |||||||||||||||||||||||    
T  23643518 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatgaagtgagatcaatttatttattg 23643431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 12639273 - 12639208
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 120  Q
    ||||||||||||||||||| |||||| ||||||||| | |||||||||||||| ||||||||||||    
T  12639273 ttttaattagttgacatattttacacattaattgaggtaaattaagtgagatccatttatttattg 12639208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 54714873 - 54714989
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 132  Q
    ||||||||||| | ||||||| ||||||||| || | |||| ||||||||||||| |||| ||| |||||| ||| |||||||||||| ||||||  | |    
T  54714873 tattgaatataacatttattaattttaattatttaaaatattttacactttaattaagataaatcaagtgaaatccatttatttattgcctattttttat 54714972  T
Q  133 tccttatccagtgcccc 149  Q
    || ||||||| ||||||    
T  54714973 tctttatccaatgcccc 54714989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 28104360 - 28104421
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 117  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||||||    
T  28104360 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagatccatttattta 28104421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 919115 - 919176
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 117  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||||||||||  |||||||||    
T  919115 ttttaattagttgatatattttaca-tttaattgagatgaattaagtgagattcatttattta 919176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 43013130 - 43013224
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 149  Q
    ||||||||||||||| |||||  |||||||||| || | ||  || ||| ||| |||||||||||| ||||||| | || |||||||||||||||    
T  43013130 ttttaattagttgacttatatctcactttaatttaggtaaaccaattgaaatccatttatttattgcctatttattatttcttatccagtgcccc 43013224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 12629902 - 12629834
Alignment:
Q  81 tttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 149  Q
    |||||||||| | ||| | || ||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  12629902 tttaattgaggtaaatcatgtaagatctattcatttattgtctatttaatgttccttatccagtgcccc 12629834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 62
Target Start/End: Complemental strand, 918682 - 918651
Alignment:
Q  31 agtattgaatatagcttttattatttttaatt 62  Q
    ||||||||||||||||||||||||||||||||    
T  918682 agtattgaatatagcttttattatttttaatt 918651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 25163491 - 25163430
Alignment:
Q  81 tttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcca 142  Q
    |||||||||| | ||| |||| ||||| ||| |||||||| ||||||| |||||||||||||    
T  25163491 tttaattgaggtaaataaagtaagatctattcatttattgtctatttaatgttccttatcca 25163430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 23037998 - 23038038
Alignment:
Q  29 agagtattgaatatagcttttattatttttaattagttgac 69  Q
    ||||||||||||| | ||||||||| |||||||||||||||    
T  23037998 agagtattgaatacaacttttattaattttaattagttgac 23038038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 4329720 - 4329599
Alignment:
Q  27 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  4329720 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatctatttatttattaactatt 4329621  T
Q  127 tactgttccttatccagtgccc 148  Q
    ||||||||||||||||||||||    
T  4329620 tactgttccttatccagtgccc 4329599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 39865298 - 39865420
Alignment:
Q  27 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||| | ||||||    
T  39865298 aaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatt 39865397  T
Q  127 tactgttccttatccagtgcccc 149  Q
    || ||||||||||||||||||||    
T  39865398 tattgttccttatccagtgcccc 39865420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 29770888 - 29770766
Alignment:
Q  27 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 126  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  ||||||||| | ||||||    
T  29770888 aaagagtattgattatagcttttattatttttaattagttgacatatattatactttaactgagatgaattaagtgagattcatttatttaattactatt 29770789  T
Q  127 tactgttccttatccagtgcccc 149  Q
    || ||||||||||||||||||||    
T  29770788 tattgttccttatccagtgcccc 29770766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 30674429 - 30674557
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 132  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||| ||||||| |||| ||| |||||||||| ||||||||||||  |||| | |||    
T  30674429 tattgaatataacatttattaattttaattagttgaaatattttacattttaattaagataaatcaagtgagatctatttatttattgcttattaattgt 30674528  T
Q  133 tccttatccagtgcccctggttaacattg 161  Q
    || |||||| ||||||| ||||| |||||    
T  30674529 tctttatccggtgcccccggttagcattg 30674557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 9074713 - 9074598
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 132  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||  |||||||||| |||||||||||| ||||||| |||    
T  9074713 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatccatttatttattgtctatttattgt 9074614  T
Q  133 tccttatccagtgccc 148  Q
    || |||||| ||||||    
T  9074613 tctttatccggtgccc 9074598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 4330136 - 4330226
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 146  Q
    |||||||||||| |||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||  |||| | |||||||||||||||||    
T  4330136 ttttaattagttaacatattttaca-tttaattgagatgaattaagtgagatccatttatttaatgcatattaattgttccttatccagtgc 4330226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 9914308 - 9914204
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 132  Q
    ||||||||||||| ||||||| ||||| |||||||| |||| ||||||||||||| |  | ||| |||||||||  |||||||||||  ||||||| |||    
T  9914308 tattgaatatagcatttattaattttagttagttgaaatattttacactttaattaaagtaaatcaagtgagattcatttatttattacctatttattgt 9914209  T
Q  133 tcctt 137  Q
    |||||    
T  9914208 tcctt 9914204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 29771299 - 29771360
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 117  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||||||||||  |||||||||    
T  29771299 ttttaattagttgacatattttaca-tataattgagatgaattaagtgagattcatttattta 29771360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 39864860 - 39864768
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 149  Q
    ||||||||| ||||||||  ||||| |||| |||||||||||||| ||||||  ||||||||| ||  |||| | || |||||||||||||||||    
T  39864860 ttttaattaattgacatagtttaca-tttatttgagatgaattaaatgagattcatttatttaatgcatattaattg-tccttatccagtgcccc 39864768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 177 - 310
Target Start/End: Complemental strand, 45395560 - 45395426
Alignment:
Q  177 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  45395560 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgttattaccatccttggatatttttctttccattaactaattatattctct 45395461  T
Q  277 caccccatgttttcc-ttccaccgcttgatgtcca 310  Q
    || |||||||||||| |||||||||||||||||||    
T  45395460 catcccatgttttcctttccaccgcttgatgtcca 45395426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 23566889 - 23567011
Alignment:
Q  27 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||  ||||||||| | ||||||    
T  23566889 aaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgatattcatttatttaattactatt 23566988  T
Q  127 tactgttccttatccagtgcccc 149  Q
    || ||||||||||||||||||||    
T  23566989 tattgttccttatccagtgcccc 23567011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 39737724 - 39737844
Alignment:
Q  27 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 126  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| | ||||| ||||||||| | ||||||    
T  39737724 aaagaatattgaatatagcttttattatttttaattagttaacatatattatattttaattgagatgaattaaataagatctatttatttaattactatt 39737823  T
Q  127 tactgttccttatccagtgcc 147  Q
    || ||||||||||||||||||    
T  39737824 tattgttccttatccagtgcc 39737844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 785770 - 785883
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 132  Q
    |||||||||||||  |||||| ||||||||| |||  |||| ||||||||| ||| || | ||| |||||||||| |||||||||||| ||||||| |||    
T  785770 tattgaatatagcaattattaattttaattaattgcaatattttacactttgattaaggtaaatcaagtgagatccatttatttattgcctatttaatgt 785869  T
Q  133 tccttatccagtgc 146  Q
    ||||||| ||||||    
T  785870 tccttattcagtgc 785883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 30385749 - 30385836
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 120  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||| || ||||||| ||||||||||||    
T  30385749 tattgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagatccatttatttattg 30385836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 39737293 - 39737232
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 117  Q
    ||||||||||||||||||| ||||| ||||||||||||| ||||||||||||  |||||||||    
T  39737293 ttttaattagttgacatattttaca-tttaattgagatggattaagtgagattcatttattta 39737232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 53153855 - 53153941
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttatt 119  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||| |||||||||  || ||||||||    
T  53153855 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagattcatctatttatt 53153941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 23566522 - 23566432
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcc 147  Q
    ||||||||||||||||||  ||||| |||| |||||||||||||||| ||||  ||||||||| ||  |||| | |||| |||||||||||||    
T  23566522 ttttaattagttgacatagtttaca-tttatttgagatgaattaagtaagatttatttatttaatgcatattaattgtt-cttatccagtgcc 23566432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 50470421 - 50470355
Alignment:
Q  227 ctattacaatccttggatgtttttctttccattaattaattatattctctcaccccatgttttcctt 293  Q
    ||||||| ||| |||||||||| | ||||| |||| |||||  |||||||| |||||||||||||||    
T  50470421 ctattaccatctttggatgtttatatttccgttaactaattgaattctctctccccatgttttcctt 50470355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 128
Target Start/End: Complemental strand, 53153590 - 53153517
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactattta 128  Q
    ||||||||||||||| |||||  |||||||||| |||| ||  || ||| ||| |||||||||||| |||||||    
T  53153590 ttttaattagttgacttatatctcactttaatttagataaaccaattgaaatccatttatttattgcctattta 53153517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 20052 - 19917
Alignment:
Q  176 tggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctc 275  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||||||||||||||||||| |||||||||||    
T  20052 tggaaaatgctttattacacgacataaaccatgcacgagaaagccacgatgttattatcatccttggatgtttttctttccattaattgattatattctc 19953  T
Q  276 tcaccccatgttttcc-ttccaccgcttgatgtcca 310  Q
    ||| |||||||||||| |||||||||||||||||||    
T  19952 tcatcccatgttttcctttccaccgcttgatgtcca 19917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 31166954 - 31167076
Alignment:
Q  27 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||| | ||||||    
T  31166954 aaagagtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatt 31167053  T
Q  127 tactgttccttatccagtgcccc 149  Q
    || ||||||||||||||||||||    
T  31167054 tattgttccttatccagtgcccc 31167076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 21971651 - 21971546
Alignment:
Q  31 agtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttact 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| | | |||||| |    
T  21971651 agtattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgagttaagtgagatc-atttatttaattattatttatt 21971553  T
Q  131 gttcctt 137  Q
    |||||||    
T  21971552 gttcctt 21971546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 27596084 - 27596002
Alignment:
Q  45 cttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactattta 128  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  27596084 cttttattatttttaattagttgac-tatattacactttaattgagatgaattaagtgagatccatttatttattggctattta 27596002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 28750927 - 28751045
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 132  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | || ||||||||||| |||||||||||| ||||||| |||    
T  28750927 tattgaatata-catttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattgt 28751025  T
Q  133 tccttatccagtgcccctgg 152  Q
    ||||||||||||||||||||    
T  28751026 tccttatccagtgcccctgg 28751045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 38916392 - 38916507
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 132  Q
    |||| |||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||| |||||||||| |||||||||||| ||||||| |||    
T  38916392 tattaaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaagtgagatccatttatttattgtctatttattgt 38916491  T
Q  133 tccttatccagtgccc 148  Q
    || |||||||||||||    
T  38916492 tctttatccagtgccc 38916507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 27230578 - 27230474
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 132  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||| || | ||| || ||||||  |||||||||||| ||||| | |||    
T  27230578 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaaatgagattcatttatttattgtctattaattgt 27230479  T
Q  133 tcctt 137  Q
    |||||    
T  27230478 tcctt 27230474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 15577578 - 15577468
Alignment:
Q  35 ttgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttc 134  Q
    ||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | || ||||||||||| ||||     ||| ||||||| |||||    
T  15577578 ttgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccattt-----ttgtctatttattgttc 15577484  T
Q  135 cttatccagtgcccct 150  Q
    ||||||||||||||||    
T  15577483 cttatccagtgcccct 15577468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 21972092 - 21972184
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgccc 148  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||||||||  ||||||||| ||  | || | |||||||||||||||||||    
T  21972092 ttttaattagttgacatattttaca-tttaattaagatgaattaagtgagattcatttatttaatgcattttaattgttccttatccagtgccc 21972184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 32741787 - 32741895
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 132  Q
    ||||||||||||| ||||||| |||||| ||||||| |||| ||| ||||||||| || | ||  |||||||||| ||||||||||||  |||||| |||    
T  32741787 tattgaatatagcatttattaattttaaatagttgaaatattttatactttaattaaggtaaaccaagtgagatccatttatttattgcttatttattgt 32741886  T
Q  133 tccttatcc 141  Q
    || ||||||    
T  32741887 tcattatcc 32741895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 55 - 148
Target Start/End: Complemental strand, 38916138 - 38916045
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgccc 148  Q
    ||||||||||||||| |||||  |||||||||| |||| ||  || ||||||| |||||||||||| ||||||| | || ||||||||||||||    
T  38916138 ttttaattagttgacttatatctcactttaatttagataaaccaattgagatctatttatttattgcctatttattatttcttatccagtgccc 38916045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 21948208 - 21948149
Alignment:
Q  29 agagtattgaatatagcttttattatttttaattagttgacatatattacactttaattg 88  Q
    ||||||||||||| || |||||||| ||||||||||||||| ||| ||||| ||| ||||    
T  21948208 agagtattgaatagagtttttattaattttaattagttgacttattttacattttgattg 21948149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 177 - 310
Target Start/End: Complemental strand, 17922991 - 17922857
Alignment:
Q  177 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||  ||||||||||||||    
T  17922991 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattaccacccttggatgtttttctttccattagctaattatattctct 17922892  T
Q  277 caccccatgtttt--ccttccaccgcttgatgtcca 310  Q
    || ||||||||||  | |||||||||||||||||||    
T  17922891 ca-cccatgtttttcctttccaccgcttgatgtcca 17922857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 8701004 - 8700890
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 132  Q
    ||||||||||| | ||||||| |||||||||||| | |||| ||||||||||||| || | ||| |||||||||| || ||||||||| ||||||| |||    
T  8701004 tattgaatataacatttattaattttaattagttaaaatattttacactttaattaaggtaaatcaagtgagatccatctatttattgcctatttattgt 8700905  T
Q  133 tccttatccagtgcc 147  Q
    ||||||||| |||||    
T  8700904 tccttatccggtgcc 8700890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 12307301 - 12307388
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 120  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| |||| ||| |||||||||| ||||||||||||    
T  12307301 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaagataaatcaagtgagatctatttatttattg 12307388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 7727381 - 7727468
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattg 120  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||  |||||||||||||||||||||||    
T  7727381 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaagtgagatcaatttatttattg 7727468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 605096 - 604984
Alignment:
Q  33 tattgaatatagcttttattatttttaatta---gttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttac 129  Q
    ||||||||||| | ||||||| |||||||||   ||||| |||| ||| ||||||||| || | ||| |||||||||| |||||||||||| |||||||     
T  605096 tattgaatataacatttattaattttaattattagttgaaatattttatactttaattaaggtaaatcaagtgagatccatttatttattgcctatttat 604997  T
Q  130 tgttccttatcca 142  Q
    |||||||||||||    
T  604996 tgttccttatcca 604984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 12307064 - 12306970
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 149  Q
    ||||||||||||||| |||||  |||||||||| || | ||| || | ||||  |||||||||||| ||||||| | || |||||||||||||||    
T  12307064 ttttaattagttgacttatatctcactttaatttaggtaaatcaattaagattcatttatttattgtctatttattatttcttatccagtgcccc 12306970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 8701263 - 8701357
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 149  Q
    ||||||||||||||| |||||  |||||||||| |  | ||| || ||||||  |||||||||||| ||||||| | || |||| ||||||||||    
T  8701263 ttttaattagttgacttatatatcactttaatttaagtaaatcaattgagattcatttatttattgcctatttattatttcttaaccagtgcccc 8701357  T

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Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 27 - 145
Target Start/End: Complemental strand, 26759325 - 26759207
Alignment:
Q  27 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 126  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||    
T  26759325 aaagagtatttaatatagcttttattatttttaattagttggcatatattatactttaattgagatgaattaagtgagatccatttatttaattactatt 26759226  T
Q  127 tactgttccttatccagtg 145  Q
    || ||||||||||||||||    
T  26759225 tattgttccttatccagtg 26759207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 146757 - 146644
Alignment:
Q  27 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 126  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| || |||||    
T  146757 aaagagtattgaatatagtttttattaattttaattagttgacatatattacactttaattgagattaataaagtgagatccatttatttaatggctatt 146658  T
Q  127 tactgttccttatc 140  Q
    || ||||| |||||    
T  146657 tattgttcattatc 146644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 33 - 152
Target Start/End: Complemental strand, 308420 - 308301
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 132  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | || ||||||||||| |||||||||||| ||||||| |||    
T  308420 tattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagtgagatccatttatttattgcctatttattgt 308321  T
Q  133 tccttatccagtgcccctgg 152  Q
    || |||||| ||||||||||    
T  308320 tcattatccggtgcccctgg 308301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 186790 - 186682
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 132  Q
    ||||||||||| | ||||||| |||||||||||||| |||| ||||| ||||||| |||| ||| |||||||||| |||||||||||  ||||||| |||    
T  186790 tattgaatataacatttattaattttaattagttgaaatattttacaatttaattaagataaatcaagtgagatccatttatttattagctatttattgt 186691  T
Q  133 tccttatcc 141  Q
    |||||||||    
T  186690 tccttatcc 186682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 149
Target Start/End: Original strand, 187049 - 187140
Alignment:
Q  58 taattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 149  Q
    |||||||||||| |||||  |||||||||| || | || ||| ||||||  |||||||||||| ||||||| | || |||||||||||||||    
T  187049 taattagttgacttatatctcactttaatttaggtaaactaattgagattcatttatttattgcctatttattatttcttatccagtgcccc 187140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 147190 - 147251
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttattta 117  Q
    ||||||||||||||||||| ||| | ||||||| ||||||||||||||||||| || ||||||    
T  147190 ttttaattagttgacatattttata-tttaattaagatgaattaagtgagatccatatattta 147251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 25277141 - 25277195
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaatt 87  Q
    ||||||||||||| ||||||| |||||||||||| | |||| | |||||||||||    
T  25277141 tattgaatatagcatttattaattttaattagttaaaatatttcacactttaatt 25277195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 39121834 - 39121956
Alignment:
Q  27 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatt 126  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||  ||||||||| | ||||||    
T  39121834 aaagagtattgaatataacttttattatttttaattagttgacatatattatactttaattgagataaattaagtgagattcatttatttaattactatt 39121933  T
Q  127 tactgttccttatccagtgcccc 149  Q
    || ||||||||||||||||||||    
T  39121934 tattgttccttatccagtgcccc 39121956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 177 - 305
Target Start/End: Complemental strand, 3623594 - 3623465
Alignment:
Q  177 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 276  Q
    |||||||||||||||  |||| | |||||||||||||||| ||||| | |||||||| | |||||||||||||| |||||||||| ||||||||||||||    
T  3623594 ggaaaatgctttatttgacgatagaaaccatgcacgagaagcccacaaagctattaccacccttggatgtttttatttccattaactaattatattctct 3623495  T
Q  277 caccccatgttttcc-ttccaccgcttgat 305  Q
    |||||||| |||||| ||||| ||||||||    
T  3623494 caccccatattttcctttccatcgcttgat 3623465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 14394091 - 14393983
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 132  Q
    ||||||||||||| |||||||  ||||||||||||| |||| ||||| ||||||| |||| ||| |||||||||| ||||||||||||  |||||| |||    
T  14394091 tattgaatatagcatttattaaatttaattagttgaaatattttacattttaattaagataaatcaagtgagatccatttatttattgcttatttattgt 14393992  T
Q  133 tccttatcc 141  Q
    |||||||||    
T  14393991 tccttatcc 14393983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 20983658 - 20983543
Alignment:
Q  34 attgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgtt 133  Q
    |||||||||| | ||||||| |||||||||||||| |||| ||||||||||||| || | ||  || ||||||| |||||||||||| ||||||| | ||    
T  20983658 attgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttatttattgtctatttattttt 20983559  T
Q  134 ccttatccagtgcccc 149  Q
     |||||||||||||||    
T  20983558 tcttatccagtgcccc 20983543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 25672380 - 25672272
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 132  Q
    |||| |||||||| ||||||| |||||||||||||| |||| ||||||||||||| | || ||  |||||||||| ||||||||||||  |||| | |||    
T  25672380 tattaaatatagcatttattaattttaattagttgaaatattttacactttaattaatataaaccaagtgagatccatttatttattgcatattcattgt 25672281  T
Q  133 tccttatcc 141  Q
    |||||||||    
T  25672280 tccttatcc 25672272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 20983842 - 20983933
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 146  Q
    ||||||||||||||| |||||  |||||||||| || | ||  || ||| ||| |||||||||||| ||||||| | || ||||||||||||    
T  20983842 ttttaattagttgacttatatctcactttaatttaggtaaaccaattgaaatccatttatttattgcctatttattatttcttatccagtgc 20983933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 14394344 - 14394438
Alignment:
Q  55 ttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 149  Q
    ||||||||||||||| |||||  |||||||||| || | ||  || ||||||  |||||||||||| ||||||| | || ||||| |||||||||    
T  14394344 ttttaattagttgacttatatctcactttaatttaggtaaaccaattgagattcatttatttattgtctatttattatttcttattcagtgcccc 14394438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 40888900 - 40888792
Alignment:
Q  33 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatcaatttatttattgactatttactgt 132  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||| |||| ||| |||| ||||| |||||| ||||| ||||| | |||    
T  40888900 tattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatcaagttagatccatttatgtattgcctattaattgt 40888801  T
Q  133 tccttatcc 141  Q
    | |||||||    
T  40888800 ttcttatcc 40888792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 23270014 - 23269946
Alignment:
Q  81 tttaattgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 149  Q
    |||||||||| | ||| |||| ||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  23270014 tttaattgaggtaaatcaagtaagatctattcatttattgtctatttaatgttccttatccagtgcccc 23269946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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