View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0304_2D_low_1 (Length: 454)
Name: NF0304_2D_low_1
Description: NF0304_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304_2D_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 30652159 - 30651724
Alignment:
| Q |
1 |
tcatactcgtaaacaactgcaaggaaagtgtatggccaggaattctcagcaatgaaggacacccttcaatcaaagatggtggatttcacctcccaagcgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30652159 |
tcatactcgtaaacaactgcaaggaaagtgtatggccaggaattctcagcaatgaaggacacccttcaatcaaagatggcggatttcacctcccaagcgg |
30652060 |
T |
|
| Q |
101 |
cgaagaacttgttctccaactccctaaccactgggcaggaagaatctggggaagacaaggctgtttcttccacgaaacaaccggaaaaggcacatgtcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30652059 |
cgaagaacttgttctccaactccctaaccactgggcaggaagaatctggggaagacaaggctgtttcttccacgaaacaaccggaaaaggcacatgtcaa |
30651960 |
T |
|
| Q |
201 |
accggagactgcggaggccaattgaaatgcaagggacttggtggtgttcctccagctacacttgttgaaatgacacttggaacctcacattcacctctac |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30651959 |
accggagactgcggaggccaattgaaatgcaagggaattggtggtgttcctccagctacacttgttgaaatgacacttggaacctcacattcacctctac |
30651860 |
T |
|
| Q |
301 |
attactatgatgttagtttagttgacggttttaaccttccaatgtcgatgaaacctattggtggcggtgttggttgtggaattgcttcttgtcaagctga |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||| |
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| T |
30651859 |
attactatgatgttagtttagttgacggttttaaccttccaatgtcgatgaaacctattggtgggggtgttggttgtggcattgctacttgtcaagctga |
30651760 |
T |
|
| Q |
401 |
tttgaatggttgttgtccatctcaacttgttgtgaa |
436 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
30651759 |
tttgaatggttgttgtccatctcaacttgttgtgaa |
30651724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 246 - 421
Target Start/End: Complemental strand, 22787447 - 22787272
Alignment:
| Q |
246 |
gttcctccagctacacttgttgaaatgacacttggaacctcacattcacctctacattactatgatgttagtttagttgacggttttaaccttccaatgt |
345 |
Q |
| |
|
||||| ||||| ||| | |||||||||||||| ||| | ||| |||||| ||||||| ||||||||| ||||||||||| ||||| || | || | | |
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| T |
22787447 |
gttccaccagcaacagtagttgaaatgacactaggatcatcatcttcaccactacatttctatgatgtgagtttagttgatggtttcaatttacctgttt |
22787348 |
T |
|
| Q |
346 |
cgatgaaacctattggtggcggtgttggttgtggaattgcttcttgtcaagctgatttgaatggttgttgtccatc |
421 |
Q |
| |
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| ||||||||| ||||||| || ||||||||||||| ||||||||| ||| ||||||||||| |||||||||||| |
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| T |
22787347 |
caatgaaacctgttggtggtggaattggttgtggaatagcttcttgtgaagttgatttgaatgtttgttgtccatc |
22787272 |
T |
|
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