View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0304_2D_low_10 (Length: 252)

Name: NF0304_2D_low_10
Description: NF0304_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0304_2D_low_10
NF0304_2D_low_10
[»] chr4 (3 HSPs)
chr4 (1-235)||(24860332-24860566)
chr4 (4-221)||(34748544-34748761)
chr4 (159-210)||(44771102-44771153)
[»] chr7 (3 HSPs)
chr7 (31-235)||(21317390-21317594)
chr7 (1-235)||(3930069-3930303)
chr7 (94-235)||(3928717-3928858)
[»] chr8 (6 HSPs)
chr8 (4-221)||(26591957-26592174)
chr8 (4-235)||(43479782-43480013)
chr8 (7-209)||(25865492-25865694)
chr8 (14-233)||(38799294-38799513)
chr8 (14-233)||(38822004-38822223)
chr8 (10-221)||(41943739-41943950)
[»] scaffold0197 (1 HSPs)
scaffold0197 (31-235)||(30828-31031)
[»] chr5 (4 HSPs)
chr5 (1-235)||(12531278-12531512)
chr5 (1-235)||(12547107-12547341)
chr5 (4-146)||(9866853-9866997)
chr5 (66-146)||(9869866-9869946)
[»] chr2 (4 HSPs)
chr2 (1-235)||(13576134-13576368)
chr2 (148-221)||(34571568-34571641)
chr2 (154-207)||(34579050-34579103)
chr2 (154-207)||(34584799-34584852)
[»] chr1 (2 HSPs)
chr1 (115-200)||(7594402-7594487)
chr1 (148-200)||(18492741-18492793)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 24860332 - 24860566
Alignment:
Q  1 ggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24860332 ggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccg 24860431  T
Q  101 tcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24860432 ttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa 24860531  T
Q  201 aacagatctccgtttccagagtagcgctgtttctg 235  Q
    ||| |||||||||||||||||||||||||||||||    
T  24860532 aaccgatctccgtttccagagtagcgctgtttctg 24860566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 34748544 - 34748761
Alignment:
Q  4 aaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcg 103  Q
    ||||| ||||||||||| ||||| ||||||||||| || ||||| ||||| |||||||| |||||||||||||||||||||||| | || ||||||||||    
T  34748544 aaagctccaaggaagcaactagccacaaaagccgctcgcaaatctgctccggccaccggtggagtgaagaaacctcaccgtttcagaccaggaaccgtcg 34748643  T
Q  104 cacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaac 203  Q
    | || || || ||||| |||||||| || ||||| || || |||||||| ||||| || ||||| ||||| |||||||| |||||||| |||||||| ||    
T  34748644 ctctacgtgagatccgtaagtaccagaagagcaccgaactcctcatccgcaaactccccttccagcgtctggttcgtgagatcgctcaggatttcaagac 34748743  T
Q  204 agatctccgtttccagag 221  Q
     |||||||||||||||||    
T  34748744 tgatctccgtttccagag 34748761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 44771153 - 44771102
Alignment:
Q  159 tccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctc 210  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  44771153 tccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctc 44771102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 21317390 - 21317594
Alignment:
Q  31 aaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaa 130  Q
    |||||||| |||||||| ||||| || ||||| ||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||| |    
T  21317390 aaagccgcacggaaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccaga 21317489  T
Q  131 aaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgt 230  Q
    | ||||| |||||||| ||  |||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| | |||||||| || |||||    
T  21317490 agagcactgagcttctgataagaaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgt 21317589  T
Q  231 ttctg 235  Q
    |||||    
T  21317590 ttctg 21317594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 3930303 - 3930069
Alignment:
Q  1 ggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccg 100  Q
    |||||||| ||| |||| || || || || ||||||||  | ||||| || || || ||||| || || |||||||| ||| | |||||||| ||||| |    
T  3930303 ggaaaagccccacggaaacaactcgccaccaaagccgcaagaaaatcagcaccggcaaccggtggtgtaaagaaaccacacagattccgtccaggaacag 3930204  T
Q  101 tcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa 200  Q
    |||||||||| || ||||||||||| || || ||||| || ||||||||  | ||||||||||||||| |  | ||||||||||||||||| ||||||||    
T  3930203 tcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaa 3930104  T
Q  201 aacagatctccgtttccagagtagcgctgtttctg 235  Q
    ||| ||||| || || |||||||| ||||||||||    
T  3930103 aactgatcttcgatttcagagtagtgctgtttctg 3930069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 3928858 - 3928717
Alignment:
Q  94 ggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaag 193  Q
    ||||| |||||| | || |||||| | ||||| ||||| | ||| |||||||||||  | |||||||| ||| || |  | |||| |||||||||||| |    
T  3928858 ggaacagtcgcattgcgtgaaatcaggaagtatcaaaagatcactgagcttctcattaggaaacttcctttcaaaagattggttcatgaaatcgctcagg 3928759  T
Q  194 atttcaaaacagatctccgtttccagagtagcgctgtttctg 235  Q
    |||||||||| |||||||| |||||||  |||||||||||||    
T  3928758 atttcaaaactgatctccgattccagatcagcgctgtttctg 3928717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 26591957 - 26592174
Alignment:
Q  4 aaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcg 103  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| || ||||||||| | || ||||||||||    
T  26591957 aaagcaccaaggaagcagctcgcaacaaaagccgctcggaaatccgctccggcgaccggcggagtgaagaagccacaccgtttcaggccaggaaccgtcg 26592056  T
Q  104 cacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaac 203  Q
    |||| || || |||||||||||||| || ||||| || |||||||| || |||||||| ||||| ||||| |||||||| || ||||| |||||||| ||    
T  26592057 cactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctcaggatttcaagac 26592156  T
Q  204 agatctccgtttccagag 221  Q
     ||||||||||| |||||    
T  26592157 ggatctccgttttcagag 26592174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 43480013 - 43479782
Alignment:
Q  4 aaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcg 103  Q
    ||||| |||||||| || || || || |||||||| |||||||| ||||| |||||||| ||||||||||| || ||| | |||||||| ||||| || |    
T  43480013 aaagctccaaggaaacaactcgccaccaaagccgctcggaaatcagctccggccaccggaggagtgaagaagccacacagattccgtcctggaactgttg 43479914  T
Q  104 cacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaac 203  Q
    | ||||| || ||||||||||| || || || || |||||||||||| | || |||||||||||| |  | ||| | ||||||||||| |||||||||||    
T  43479913 ctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttccattccaaagattggttagggaaatcgctcaggatttcaaaac 43479814  T
Q  204 agatctccgtttccagagtagcgctgtttctg 235  Q
     |||||| | ||||||||||||||||||||||    
T  43479813 tgatctcaggttccagagtagcgctgtttctg 43479782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 209
Target Start/End: Original strand, 25865492 - 25865694
Alignment:
Q  7 gcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcac 106  Q
    |||||||||||||| || || || ||||| ||  ||||||| |||||| ||||||||||||||||||| ||||| ||||  ||||| |||||||| || |    
T  25865492 gcaccaaggaagcaactcgcgaccaaagctgcaaggaaatctgctccaaccaccggcggagtgaagaagcctcatcgttatcgtcctggaaccgttgctc 25865591  T
Q  107 ttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacaga 206  Q
    |||| || ||||| ||||| || || || || |||||| | ||||| || ||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||    
T  25865592 ttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattgctcaggatttcaaaacgga 25865691  T
Q  207 tct 209  Q
    |||    
T  25865692 tct 25865694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 38799294 - 38799513
Alignment:
Q  14 ggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcga 113  Q
    |||||||||| || || || ||||| |||||||| ||||| || ||||| ||||||||||| || ||  | ||| | || ||||| || ||  |  | ||    
T  38799294 ggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccggaggagtgaagaagccacatagattcagacctggaactgttgctttgagaga 38799393  T
Q  114 aatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgt 213  Q
     ||||| ||||| || || ||||| |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||  |     
T  38799394 gatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgaga 38799493  T
Q  214 ttccagagtagcgctgtttc 233  Q
    |||||||| ||||| |||||    
T  38799494 ttccagagcagcgcagtttc 38799513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 38822223 - 38822004
Alignment:
Q  14 ggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcga 113  Q
    |||||||||| || || || ||||| |||||||| ||||| || ||||| ||||||||||| || ||  | ||| | || ||||| || ||  |  | ||    
T  38822223 ggaagcagctcgccaccaaggccgctcggaaatcagctccggcgaccggaggagtgaagaagccacatagattcagacctggaactgttgctttgagaga 38822124  T
Q  114 aatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgt 213  Q
     ||||| ||||| || || ||||| |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||  |     
T  38822123 gatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgaga 38822024  T
Q  214 ttccagagtagcgctgtttc 233  Q
    |||||||| ||||| |||||    
T  38822023 ttccagagcagcgcagtttc 38822004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 41943739 - 41943950
Alignment:
Q  10 ccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttc 109  Q
    ||||||||||| || || || || || || || ||||| |||||  | ||||| ||||| ||||||||||| || |  ||||| || ||||| |||||||    
T  41943739 ccaaggaagcaactggccaccaaggctgctcgcaaatctgctcctacaaccggtggagtcaagaaacctcatcgctatcgtcctggtaccgttgcacttc 41943838  T
Q  110 gcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatct 209  Q
    | || ||||| || ||||| || || || || ||| | ||||| || ||||||||||||||||| ||||||||||| |||||||||||||| || |||||    
T  41943839 gtgagatccgtaaataccagaagagtactgatcttttgatccgtaagcttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacggatct 41943938  T
Q  210 ccgtttccagag 221  Q
    | | ||||||||    
T  41943939 cagattccagag 41943950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 31 - 235
Target Start/End: Original strand, 30828 - 31031
Alignment:
Q  31 aaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaa 130  Q
    |||||||| |||||||| ||||| || ||||| ||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||| |    
T  30828 aaagccgcacggaaatcagctccggcgaccggaggagtgaagaagccacaccgtttccgtcccggaaccgtggcgcttcgtgaaatccgcaagtaccaga 30927  T
Q  131 aaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagagtagcgctgt 230  Q
    | ||||| |||||||| ||  |||||||| ||||||||||||| ||||||||||||||||| |||||||||||  ||||| | |||||||| || |||||    
T  30928 agagcactgagcttctgataagaaaactt-cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgt 31026  T
Q  231 ttctg 235  Q
    |||||    
T  31027 ttctg 31031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 12531278 - 12531512
Alignment:
Q  1 ggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccg 100  Q
    ||||||||||||||||||||||| || || ||||| ||||||||||| ||||| || ||||| ||||| ||||| || ||| | |||||||| ||||| |    
T  12531278 ggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccggaggagtcaagaagccacacagattccgtccaggaactg 12531377  T
Q  101 tcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa 200  Q
    | |||||||| || |||||||||||||| || ||||| |||||||| ||  | || |||||||||||  | || ||||||||||||||||||||||||||    
T  12531378 ttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttcgtgaaatcgctcaagatttcaa 12531477  T
Q  201 aacagatctccgtttccagagtagcgctgtttctg 235  Q
    |||||||||||| ||||| || || ||||||||||    
T  12531478 aacagatctccgattccaaagcagtgctgtttctg 12531512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 12547341 - 12547107
Alignment:
Q  1 ggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccg 100  Q
    ||||||||||||||||||||||| || || ||||| ||||||||||| ||||| || ||||| ||||| ||||| || ||| | |||||||| ||||| |    
T  12547341 ggaaaagcaccaaggaagcagcttgccactaaagctgcccggaaatctgctccggcaaccggaggagtcaagaagccacacagattccgtccaggaactg 12547242  T
Q  101 tcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa 200  Q
    | |||||||| || |||||||||||||| || ||||| |||||||| ||  | || |||||||||||  | || ||||||||||||||||||||||||||    
T  12547241 ttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttcgtgaaatcgctcaagatttcaa 12547142  T
Q  201 aacagatctccgtttccagagtagcgctgtttctg 235  Q
    |||||||||||| ||||| || || ||||||||||    
T  12547141 aacagatctccgattccaaagcagtgctgtttctg 12547107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 9866997 - 9866853
Alignment:
Q  4 aaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccgtcg 103  Q
    ||||||||| | ||| |||| || |||||||| || |||||||| ||||| || || || ||||||||||| || |||||||||||||| |||||||| |    
T  9866997 aaagcaccatgaaagaagctggccacaaaagctgctcggaaatcagctccggcaacgggaggagtgaagaagccacaccgtttccgtcctggaaccgttg 9866898  T
Q  104 cacttcgcgaaatccgca--agtaccaaaaaagcacagagcttct 146  Q
    | ||||| || ||||| |  |||||||||| ||||  ||||||||    
T  9866897 cgcttcgtgagatccgtaagagtaccaaaagagcattgagcttct 9866853  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 146
Target Start/End: Original strand, 9869866 - 9869946
Alignment:
Q  66 agtgaagaaacctcaccgtttccgtcccggaaccgtcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttct 146  Q
    |||||||||||| ||| ||||| |||  |||||||| || ||||| || ||||| |||||||| || ||||| ||||||||    
T  9869866 agtgaagaaaccacactgtttctgtcatggaaccgttgctcttcgtgagatccgtaagtaccagaagagcactgagcttct 9869946  T

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Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 13576134 - 13576368
Alignment:
Q  1 ggaaaagcaccaaggaagcagctagcaacaaaagccgcccggaaatccgctccagccaccggcggagtgaagaaacctcaccgtttccgtcccggaaccg 100  Q
    |||||||||||| | || || || || ||||||||||| |||||||||||||| |||||||| ||||||||||| || || ||||||||||| |||||||    
T  13576134 ggaaaagcaccacgcaaacaactcgccacaaaagccgctcggaaatccgctccggccaccggaggagtgaagaagccacatcgtttccgtcctggaaccg 13576233  T
Q  101 tcgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa 200  Q
    |||| ||||| |||||||||||||| || || ||||| |||||||||||  | || |||||||||||| |  | ||||| ||||| ||||| ||||||||    
T  13576234 tcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaagcttccattccaaagattggttcgagaaattgctcaggatttcaa 13576333  T
Q  201 aacagatctccgtttccagagtagcgctgtttctg 235  Q
    ||| ||||||||||| || || || ||||||||||    
T  13576334 aacggatctccgttttcaaagcagtgctgtttctg 13576368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 34571641 - 34571568
Alignment:
Q  148 atccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagatctccgtttccagag 221  Q
    ||||| |||||||||||||| ||||| ||||||||||| ||||| |||||||| || ||| | || ||||||||    
T  34571641 atccgtaaacttccattccagcgtcttgttcgtgaaattgctcaggatttcaagacggatttacgattccagag 34571568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 34579103 - 34579050
Alignment:
Q  154 aaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagat 207  Q
    |||||||||||||| ||||| ||||||||||| |||||  ||||||| ||||||    
T  34579103 aaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagat 34579050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 34584852 - 34584799
Alignment:
Q  154 aaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaaaacagat 207  Q
    |||||||||||||| ||||| ||||||||||| |||||  ||||||| ||||||    
T  34584852 aaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagat 34584799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 7594487 - 7594402
Alignment:
Q  115 atccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa 200  Q
    ||||| |||||||| || || || |||||| | ||||| || |||||||| || ||||| || |||||||| ||||||||||||||    
T  7594487 atccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaaattgctcaagatttcaa 7594402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 18492741 - 18492793
Alignment:
Q  148 atccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa 200  Q
    ||||| ||||||||||||||  |||| |||||||||||  |||||||||||||    
T  18492741 atccgtaaacttccattccagtgtcttgttcgtgaaatttctcaagatttcaa 18492793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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