View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0304_2D_low_11 (Length: 248)

Name: NF0304_2D_low_11
Description: NF0304_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0304_2D_low_11
NF0304_2D_low_11
[»] chr4 (2 HSPs)
chr4 (1-230)||(24860138-24860356)
chr4 (1-67)||(34748499-34748565)
[»] chr5 (2 HSPs)
chr5 (3-64)||(12531239-12531300)
chr5 (3-64)||(12547319-12547380)
[»] chr8 (6 HSPs)
chr8 (6-68)||(25865443-25865505)
chr8 (6-68)||(41943687-41943749)
chr8 (3-66)||(26591913-26591976)
chr8 (9-65)||(43480000-43480056)
chr8 (27-64)||(38799242-38799279)
chr8 (27-64)||(38822238-38822275)
[»] chr2 (5 HSPs)
chr2 (8-68)||(34571801-34571861)
chr2 (8-68)||(34562977-34563037)
chr2 (14-65)||(13576094-13576145)
chr2 (6-68)||(34579237-34579299)
chr2 (6-68)||(34584986-34585048)
[»] chr7 (1 HSPs)
chr7 (9-66)||(3930287-3930344)
[»] chr1 (1 HSPs)
chr1 (3-64)||(7594916-7594977)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 24860356 - 24860138
Alignment:
Q  1 ctagctgcttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccattgaaattggaatgaaattgaaatttgaatgaaatga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||    
T  24860356 ctagctgcttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccattgaaattg-----------aaatttgaatgaaatga 24860268  T
Q  101 gatttgagttatgctgtgtgtttgtgttgtgttgaataaatggaaggagaggtatatttatagagtggggggtgtaagaagagtgaagcgcgggatttga 200  Q
    ||||||||||||||| ||||||||||||||||||| | || ||||| |||||| ||||||||||||| |||||||||||||||||| |||||||||||||    
T  24860267 gatttgagttatgctatgtgtttgtgttgtgttgagtgaagggaagaagaggtgtatttatagagtgtggggtgtaagaagagtgaggcgcgggatttga 24860168  T
Q  201 aatgtgttttgaaaattttggttttgttga 230  Q
    |||||||||||||| |||||||||||||||    
T  24860167 aatgtgttttgaaatttttggttttgttga 24860138  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 34748565 - 34748499
Alignment:
Q  1 ctagctgcttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccattga 67  Q
    |||| ||||||||||| ||||| ||||| |||||||||||||| |||||||| ||||| ||||||||    
T  34748565 ctagttgcttccttggagctttacctccagtggatttgcgagcggtttgcttggtacgtgccattga 34748499  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 12531300 - 12531239
Alignment:
Q  3 agctgcttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccat 64  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  12531300 agctgcttccttggtgcttttccgccggtggatttgcgagctgtttgcttggtacgagccat 12531239  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 12547319 - 12547380
Alignment:
Q  3 agctgcttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccat 64  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  12547319 agctgcttccttggtgcttttccgccggtggatttgcgagctgtttgcttggtacgagccat 12547380  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 25865505 - 25865443
Alignment:
Q  6 tgcttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccattgaa 68  Q
    |||||||||||||| || || ||||||||||||||||| |||||||| |||||||||||||||    
T  25865505 tgcttccttggtgccttgccgccggtggatttgcgagcagtttgcttcgtacgagccattgaa 25865443  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 41943749 - 41943687
Alignment:
Q  6 tgcttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccattgaa 68  Q
    ||||||||||| || || || ||||||||||||||||| |||||||| |||||||||||||||    
T  41943749 tgcttccttggagccttgccaccggtggatttgcgagcagtttgcttagtacgagccattgaa 41943687  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 26591976 - 26591913
Alignment:
Q  3 agctgcttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccattg 66  Q
    |||||||||||||||||||| || |||||||| ||||| || |||||||| ||||| |||||||    
T  26591976 agctgcttccttggtgctttgccgccggtggacttgcgtgcagtttgcttagtacgtgccattg 26591913  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 43480000 - 43480056
Alignment:
Q  9 ttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccatt 65  Q
    |||||||| ||||| || ||||||||||||||||| ||||| || ||||||||||||    
T  43480000 ttccttggagctttgccaccggtggatttgcgagcggtttgtttggtacgagccatt 43480056  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 38799279 - 38799242
Alignment:
Q  27 ccggtggatttgcgagctgtttgctttgtacgagccat 64  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  38799279 ccggtggatttgcgagctgtttgcttggtacgtgccat 38799242  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 38822238 - 38822275
Alignment:
Q  27 ccggtggatttgcgagctgtttgctttgtacgagccat 64  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  38822238 ccggtggatttgcgagctgtttgcttggtacgtgccat 38822275  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 34571801 - 34571861
Alignment:
Q  8 cttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccattgaa 68  Q
    |||||||||||| || || ||||||||||||||||| |||||||||||||| |||||||||    
T  34571801 cttccttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccattgaa 34571861  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 34562977 - 34563037
Alignment:
Q  8 cttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccattgaa 68  Q
    |||| ||||||| || || ||||||||||||||||| |||||||||||||| |||||||||    
T  34562977 cttcgttggtgccttgccaccggtggatttgcgagcagtttgctttgtacgcgccattgaa 34563037  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 13576145 - 13576094
Alignment:
Q  14 tggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccatt 65  Q
    |||||||||||| |||||||||||||| |||||||| || ||||| ||||||    
T  13576145 tggtgcttttccgccggtggatttgcgggctgtttgtttggtacgtgccatt 13576094  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 34579237 - 34579299
Alignment:
Q  6 tgcttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccattgaa 68  Q
    |||||||||||||| || ||   ||||||| ||||||| |||||||||||||| |||||||||    
T  34579237 tgcttccttggtgccttaccaagggtggatctgcgagcagtttgctttgtacgcgccattgaa 34579299  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 34584986 - 34585048
Alignment:
Q  6 tgcttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccattgaa 68  Q
    |||||||||||||| || ||   ||||||| ||||||| |||||||||||||| |||||||||    
T  34584986 tgcttccttggtgccttaccaagggtggatctgcgagcagtttgctttgtacgcgccattgaa 34585048  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 3930287 - 3930344
Alignment:
Q  9 ttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccattg 66  Q
    |||| ||| |||||||||||||||||||| || |||||||| || ||||| |||||||    
T  3930287 ttccgtggggcttttcctccggtggattttcgtgctgtttgtttggtacgtgccattg 3930344  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 7594916 - 7594977
Alignment:
Q  3 agctgcttccttggtgcttttcctccggtggatttgcgagctgtttgctttgtacgagccat 64  Q
    |||||||||||||| || || || ||||| || |||||||| |||||||| |||||||||||    
T  7594916 agctgcttccttggagccttaccaccggtagacttgcgagcggtttgcttggtacgagccat 7594977  T

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