View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0304_2D_low_15 (Length: 211)
Name: NF0304_2D_low_15
Description: NF0304_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304_2D_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 3176166 - 3176352
Alignment:
| Q |
13 |
gatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttcgagaaagagaaaaactaatactaaagttttggccattttttggtttaagag |
112 |
Q |
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| T |
3176166 |
gatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttggagaaagagaaaaaccaatactaaagttttggccattttttggtttaagag |
3176265 |
T |
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| Q |
113 |
aaggtaaccttgagagagagggagatgagtgatgttggtgtgttgagagagtgtgatagttgatctatttataagagctgatgtcca |
199 |
Q |
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| T |
3176266 |
aatgtaaccttgaaagagagggagttgagtgatgttggtgtgttgagagagtgtgagagttgatctatttataagagctaatgtcca |
3176352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 24541364 - 24541537
Alignment:
| Q |
13 |
gatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttcgagaaagagaaaaactaatactaaagttttggccattttttggt-ttaaga |
111 |
Q |
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|||||| ||||||||||| |||||| || ||||||||||||||||||| |||||||||||||| |||| | |||||| |||||||||| || |||||| |
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| T |
24541364 |
gatgaagagtttctagcttttcagcaaatgctatgaaagaggttatttggagaaagagaaaaaacaataagagagttttcgccatttttttgtgttaaga |
24541463 |
T |
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| Q |
112 |
gaaggtaaccttgagagagagggagatgagtgatgttggtgtgttgagagagtgtgatagttgatctatttata |
185 |
Q |
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| T |
24541464 |
gaaggtaaccttgaaagagagggagatgagtgatgttgatgtgttgagagagtgtgagagttgatctatttata |
24541537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 41525281 - 41525460
Alignment:
| Q |
13 |
gatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttcgagaaagagaaaaact-aatactaaagttttggccattttttggtttaaga |
111 |
Q |
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|||||| |||||||||||||||||| || |||||||| |||||||||| ||| |||||||||| ||||||| |||||||||||||||||| ||||||| |
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| T |
41525281 |
gatgaagagtttctagctcttcagcaaatgctatgaaggaggttatttggagtaagagaaaaaaacaatactagagttttggccattttttgttttaaga |
41525380 |
T |
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| Q |
112 |
gaaggtaaccttgagagagagggagatgagtgatgttggtgtgttgagagagtgtgatagttgatctatttataagagct |
191 |
Q |
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||| | ||| |||| ||||||||||| ||| ||||||||| ||||||||||||||| |||||||||||||||| ||||| |
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| T |
41525381 |
gaatgcaactttgaaagagagggagagaagtaatgttggtgggttgagagagtgtgagagttgatctatttataggagct |
41525460 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 20963903 - 20963741
Alignment:
| Q |
14 |
atgaaaagtttctagctcttcagctaaagctatgaaagaggttatttcgagaaagagaaaaactaatactaaagttttggccatt--ttttggtttaaga |
111 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||| ||||| |||||| |
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| T |
20963903 |
atgaaaagtttctagctcttcagtaaatgctatgaaagaggttatttggagaaagagaaaaaacaataccagagttttggccattttttttgtgttaaga |
20963804 |
T |
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| Q |
112 |
gaaggtaaccttgagagagagggagatgagtgatgttggtgtgttgagagagtgtgatagttga |
175 |
Q |
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||| | |||||||| ||||||||||| || ||||||||||||||||||||||||||| |||||| |
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| T |
20963803 |
gaaag-aaccttgaaagagagggagaggattgatgttggtgtgttgagagagtgtgagagttga |
20963741 |
T |
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