View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0304_2D_low_6 (Length: 384)
Name: NF0304_2D_low_6
Description: NF0304_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304_2D_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 367
Target Start/End: Complemental strand, 7620283 - 7619923
Alignment:
| Q |
11 |
tgaacaagattggatcaaaaaccaaaacttgaattactatattcaaacaccaaaatttgtcatacagtatatgctaaatagtgttattccacatgaaatc |
110 |
Q |
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| T |
7620283 |
tgaacaagattggatcaaaaaccaaaatttgaattactatattcaaacaccaaaatttgtcatacagtatatgctaaatagtgttattccacatgaaatc |
7620184 |
T |
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| Q |
111 |
catctaaatatagaaaatcagatatctttgagcacgatcatatatgcaagttatttctatacnnnnnnnn----taacaattatcaattccnnnnnnnnt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
7620183 |
catctaaatatagaaaatcagatatctttgagcacgatcatatatgcaagttatttctatacaaaaaaaaaaaataacaattatcaattccaaaaaaaat |
7620084 |
T |
|
| Q |
207 |
agtttgcacttcgcataggaataagttaaaacagatatcagctaactagaacataaagtaaaaggaataagcacatgcataccatctttcagttgggact |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7620083 |
agtttgcacttcgcataggaataagttaaaacagatatcagctaactagaacataaagtaaaaggaataagcacatgcataccatctttcagttgggact |
7619984 |
T |
|
| Q |
307 |
gttgttccaaggattgaagcctcaatttgtactctttattctcacttttagcctcttgatg |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7619983 |
gttgttccaaggattgaagcctcaatttgtactctttattctcacttttagcctcttgatg |
7619923 |
T |
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