View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0304_2D_low_7 (Length: 294)
Name: NF0304_2D_low_7
Description: NF0304_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304_2D_low_7 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 17068669 - 17068380
Alignment:
| Q |
1 |
gactgttatgtctctcttaaaagctaataaaacacttttaatcaacgtgattattctgtcaaataaaggaaatgtcaaggcttggacatatgtagaattt |
100 |
Q |
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| T |
17068669 |
gactgttatgtctctcttaaaagctaataaaacactattaatcaacgtgattattctgtcaaataaaggaaatgtcaaggcttggacatatgtagaattt |
17068570 |
T |
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| Q |
101 |
aagttaattgtcatttctaaattcttgatagtaaaaagatttagacgatcgaaatagaagagggacctttgttggattttgaaagattttaatcaatttt |
200 |
Q |
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| T |
17068569 |
aagttaattgtcatttctaaattcttgatagtaaaaagatttaga----cgaaatagaagagggacctttgttggatttggaaagattttaatcaatttt |
17068474 |
T |
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| Q |
201 |
ctacaatgtgacgctacaataagaatatttctttcatatcattcttcatgccaaacatcctggctatgttcattattctggctacgttcgtgtt |
294 |
Q |
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| T |
17068473 |
ctacaacgagacgctacaataagaatatttctttcatatcattcttcatgccaaacaacctggctatgttcattattctggctacgttcgtgtt |
17068380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 284
Target Start/End: Complemental strand, 17063380 - 17063208
Alignment:
| Q |
118 |
taaattcttgatagtaaaaagatttagacgatcgaaatagaagagggacc-tttgttggattttgaaagattttaatcaattttctacaatgtgacgcta |
216 |
Q |
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| T |
17063380 |
taaatttttgatatttaaaagatttaga----agaaatagaggagggaccttttcttggattttgaaagattttaatcacttttctacaatgagatgcaa |
17063285 |
T |
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| Q |
217 |
caataagaatatttctttcatatc---------attcttcatgccaaacatcctggctatgttcattattctggcta |
284 |
Q |
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| T |
17063284 |
caataagaatatttctttcatatcccaaatattagtattcttgccaaacatcctggctatgttcattattctggcta |
17063208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 17063453 - 17063414
Alignment:
| Q |
73 |
tgtcaaggcttggacatatgtagaatttaagttaattgtc |
112 |
Q |
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| T |
17063453 |
tgtcaaggcttggacatatgtggaatttatgttaattgtc |
17063414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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