View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0304_high_3 (Length: 448)

Name: NF0304_high_3
Description: NF0304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0304_high_3
NF0304_high_3
[»] chr2 (9 HSPs)
chr2 (260-374)||(3205831-3205945)
chr2 (373-440)||(9293576-9293643)
chr2 (373-440)||(23268062-23268129)
chr2 (374-440)||(35160756-35160822)
chr2 (375-440)||(21936081-21936146)
chr2 (376-440)||(10661888-10661952)
chr2 (373-439)||(13354844-13354910)
chr2 (374-440)||(7475508-7475574)
chr2 (375-440)||(33380207-33380272)
[»] scaffold0096 (1 HSPs)
scaffold0096 (373-440)||(41009-41076)
[»] chr8 (17 HSPs)
chr8 (373-440)||(32064743-32064810)
chr8 (375-440)||(34665382-34665447)
chr8 (373-440)||(17841850-17841917)
chr8 (373-440)||(40780129-40780196)
chr8 (373-440)||(42755042-42755109)
chr8 (373-439)||(15187558-15187624)
chr8 (382-440)||(38016978-38017036)
chr8 (375-440)||(20091801-20091866)
chr8 (375-440)||(24211553-24211618)
chr8 (375-440)||(32393858-32393923)
chr8 (376-440)||(14128865-14128929)
chr8 (373-440)||(1645965-1646032)
chr8 (373-440)||(26042116-26042183)
chr8 (373-440)||(37986055-37986122)
chr8 (373-440)||(39772801-39772868)
chr8 (375-440)||(35353041-35353106)
chr8 (374-440)||(41819778-41819844)
[»] chr7 (10 HSPs)
chr7 (373-440)||(45637710-45637777)
chr7 (374-440)||(15577850-15577916)
chr7 (375-440)||(4974735-4974800)
chr7 (375-440)||(42611811-42611876)
chr7 (373-440)||(15329271-15329338)
chr7 (375-440)||(48880927-48880992)
chr7 (375-438)||(24394972-24395035)
chr7 (374-440)||(35444557-35444623)
chr7 (375-440)||(3961979-3962044)
chr7 (375-428)||(20010109-20010162)
[»] chr6 (12 HSPs)
chr6 (373-440)||(18365573-18365640)
chr6 (373-440)||(18370837-18370904)
chr6 (374-440)||(33695327-33695393)
chr6 (374-440)||(33696695-33696761)
chr6 (373-440)||(6127273-6127340)
chr6 (373-440)||(23291084-23291151)
chr6 (375-440)||(17176021-17176086)
chr6 (372-440)||(28675145-28675213)
chr6 (375-440)||(17705465-17705530)
chr6 (374-439)||(18889698-18889762)
chr6 (373-440)||(2309423-2309490)
chr6 (375-440)||(6031741-6031806)
[»] chr4 (16 HSPs)
chr4 (373-440)||(10442789-10442856)
chr4 (374-440)||(31078819-31078885)
chr4 (375-440)||(22199261-22199326)
chr4 (375-440)||(49387888-49387953)
chr4 (373-440)||(21802322-21802389)
chr4 (373-440)||(24128237-24128304)
chr4 (375-438)||(36072947-36073010)
chr4 (373-440)||(44893424-44893491)
chr4 (373-440)||(47290064-47290131)
chr4 (374-440)||(33530688-33530754)
chr4 (375-440)||(2624837-2624902)
chr4 (374-438)||(4751445-4751509)
chr4 (376-440)||(7745112-7745176)
chr4 (373-440)||(23964465-23964532)
chr4 (373-440)||(36073348-36073415)
chr4 (372-440)||(50156578-50156646)
[»] chr1 (12 HSPs)
chr1 (375-440)||(40214988-40215053)
chr1 (373-440)||(16045798-16045865)
chr1 (375-440)||(9910293-9910358)
chr1 (375-440)||(44094698-44094763)
chr1 (373-440)||(3559615-3559682)
chr1 (373-440)||(18404440-18404507)
chr1 (373-440)||(19015402-19015469)
chr1 (373-440)||(25463674-25463741)
chr1 (374-440)||(41876442-41876508)
chr1 (375-440)||(36966708-36966773)
chr1 (375-440)||(37821834-37821899)
chr1 (373-440)||(25973412-25973478)
[»] scaffold0471 (1 HSPs)
scaffold0471 (373-440)||(12840-12907)
[»] chr5 (13 HSPs)
chr5 (373-440)||(2477634-2477701)
chr5 (373-440)||(6043511-6043578)
chr5 (375-440)||(11361131-11361196)
chr5 (374-438)||(3362777-3362841)
chr5 (384-440)||(8145384-8145440)
chr5 (374-438)||(38899728-38899792)
chr5 (373-440)||(4892200-4892267)
chr5 (373-440)||(14138666-14138733)
chr5 (375-440)||(25398238-25398303)
chr5 (375-440)||(33584329-33584394)
chr5 (369-440)||(37321793-37321865)
chr5 (375-438)||(12850801-12850864)
chr5 (375-440)||(3522006-3522071)
[»] chr3 (15 HSPs)
chr3 (373-440)||(2754715-2754782)
chr3 (373-440)||(3574527-3574594)
chr3 (373-439)||(11347266-11347332)
chr3 (375-440)||(6041884-6041949)
chr3 (375-440)||(37217053-37217118)
chr3 (372-440)||(3137414-3137482)
chr3 (373-440)||(33113791-33113858)
chr3 (365-440)||(48160895-48160970)
chr3 (375-440)||(3456064-3456129)
chr3 (375-440)||(30385011-30385076)
chr3 (373-440)||(34482910-34482977)
chr3 (373-440)||(37522051-37522118)
chr3 (373-406)||(47402630-47402663)
chr3 (375-440)||(19650900-19650965)
chr3 (374-406)||(42297352-42297384)
[»] scaffold0178 (1 HSPs)
scaffold0178 (375-440)||(11621-11686)
[»] scaffold0085 (1 HSPs)
scaffold0085 (375-440)||(47850-47915)
[»] scaffold0665 (1 HSPs)
scaffold0665 (376-440)||(3069-3133)
[»] scaffold0204 (1 HSPs)
scaffold0204 (373-440)||(4394-4461)
[»] scaffold0228 (3 HSPs)
scaffold0228 (386-440)||(8413-8467)
scaffold0228 (386-440)||(15995-16049)
scaffold0228 (386-440)||(25947-26001)


Alignment Details
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 260 - 374
Target Start/End: Complemental strand, 3205945 - 3205831
Alignment:
Q  260 tgttcctttttcttttgcaagtgatttaacttgctgccctcctagatctggttatttggttcaattaaattattaatttgttgtgatagtgtttttgtgt 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3205945 tgttcctttttcttttgcaagtgatttaacttgctgccctcctagatctggttatttggttcaattaaattattaatttgttgtgatagtgtttttgtgt 3205846  T
Q  360 taagctttcaaacaa 374  Q
    |||||||||||||||    
T  3205845 taagctttcaaacaa 3205831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 9293643 - 9293576
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  9293643 aagagcaatgctatatatcaagaaagattttatcaagaaattttcaagaatgacatggcagaataatc 9293576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 23268129 - 23268062
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||| ||       |||||||||||||||||||||||||||    
T  23268129 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 23268062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 35160756 - 35160822
Alignment:
Q  374 agagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||| ||||||||||||||||||||||||       ||| |||||||||||||||||||||||    
T  35160756 agagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 35160822  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 21936081 - 21936146
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       |||||||||||| ||||||||||||||    
T  21936081 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataatc 21936146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 10661888 - 10661952
Alignment:
Q  376 agcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||| ||||||||||||||||||||||||       ||| |||||||||||||||||||||||    
T  10661888 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 10661952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 439
Target Start/End: Original strand, 13354844 - 13354910
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataat 439  Q
    |||||||||  |||||||||||||||||||||||       |||||||||||| |||||||||||||    
T  13354844 aagagcaatgttatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataat 13354910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 7475574 - 7475508
Alignment:
Q  374 agagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||| ||||||||||||||||||||| ||       ||||||||||||||||  |||||||||    
T  7475574 agagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatgatagaataatc 7475508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 33380207 - 33380272
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||| ||       ||| |||||||||||||| ||||||||    
T  33380207 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggctgaataatc 33380272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 41009 - 41076
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  41009 aagagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaataatc 41076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 32064743 - 32064810
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  32064743 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 32064810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 34665382 - 34665447
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  34665382 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 34665447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 17841917 - 17841850
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||| ||       |||||||||||||||||||||||||||    
T  17841917 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 17841850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 40780196 - 40780129
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||| ||       |||||||||||||||||||||||||||    
T  40780196 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 40780129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 42755109 - 42755042
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||||  |||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  42755109 aagagcaatgatatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 42755042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 439
Target Start/End: Original strand, 15187558 - 15187624
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataat 439  Q
    ||||||||| ||||||||||||||||||||||||       |||||||||||| |||||||||||||    
T  15187558 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataat 15187624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 440
Target Start/End: Original strand, 38016978 - 38017036
Alignment:
Q  382 tctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  38016978 tctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 38017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 20091866 - 20091801
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||| ||||||||       |||||||||||||||||||||||||||    
T  20091866 gagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaataatc 20091801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 24211618 - 24211553
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       ||||||||||| |||||||||||||||    
T  24211618 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatggcatggcagaataatc 24211553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 32393858 - 32393923
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       ||| |||||||||||||||||||||||    
T  32393858 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 32393923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 14128865 - 14128929
Alignment:
Q  376 agcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||| ||||||||||||||||||||||||       ||| |||||||||||||||||||||||    
T  14128865 agcaatgctatatatcaagaaagattttatcaataaaattttaagaatgacatggcagaataatc 14128929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 1646032 - 1645965
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||||||       ||| ||||| |||||||||||||||||    
T  1646032 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaaagacatggcagaataatc 1645965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 26042183 - 26042116
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| |||||||| |||||||||||||||       |||||||||||||||| ||||||||||    
T  26042183 aagagcaatgctatatattaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 26042116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 37986122 - 37986055
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||| ||| ||||||||||||||||||||||||       ||| |||||||||||||||||||||||    
T  37986122 aagagtaatgctatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaataatc 37986055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 39772868 - 39772801
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||||  |||||||||||||| ||||||||       |||||||||||||||||||||||||||    
T  39772868 aagagcaatgttatatatcaagaaatattttatcaaaaaaatttcaagaatgacatggcagaataatc 39772801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 35353041 - 35353106
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||| ||       ||| |||||||||||||||||||||||    
T  35353041 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 35353106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 41819844 - 41819778
Alignment:
Q  374 agagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||  |||||||||||||||||||||||       ||| |||||||| ||||||||||||||    
T  41819844 agagcaatgttatatatcaagaaagattttatcaagaatgttttaagaatgatatggcagaataatc 41819778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 45637710 - 45637777
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  45637710 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 45637777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 15577916 - 15577850
Alignment:
Q  374 agagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  15577916 agagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 15577850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 4974800 - 4974735
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  4974800 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 4974735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 42611811 - 42611876
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  42611811 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 42611876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 15329271 - 15329338
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||||||       |||||||||||||||| ||||||||||    
T  15329271 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 15329338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 48880992 - 48880927
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       |||||||||||||||| ||||||||||    
T  48880992 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 48880927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 438
Target Start/End: Original strand, 24394972 - 24395035
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataa 438  Q
    ||||||| ||||||||||||||||||||||||       ||| |||||||||||||||||||||    
T  24394972 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataa 24395035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 35444557 - 35444623
Alignment:
Q  374 agagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||| |||||||| |||||||||||| ||       |||||||||||||||||||||||||||    
T  35444557 agagcaatgctatatattaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 35444623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 3961979 - 3962044
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       ||| |||||||||||| ||||||||||    
T  3961979 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgacagaataatc 3962044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 428
Target Start/End: Complemental strand, 20010162 - 20010109
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacat 428  Q
    ||||||| ||||||||||||||||||||||||       |||||||||||||||    
T  20010162 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacat 20010109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 18365640 - 18365573
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  18365640 aagagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaataatc 18365573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 18370904 - 18370837
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  18370904 aagagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaataatc 18370837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 33695393 - 33695327
Alignment:
Q  374 agagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  33695393 agagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 33695327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 33696695 - 33696761
Alignment:
Q  374 agagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  33696695 agagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 33696761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 6127273 - 6127340
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||||||       ||| |||||||||||||||||||||||    
T  6127273 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 6127340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 23291151 - 23291084
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||||||       ||| |||||||||||||||||||||||    
T  23291151 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 23291084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 17176086 - 17176021
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       |||||||||||||||| ||||||||||    
T  17176086 gagcaatgctatatatcaagaaagattttatcaataaaatttcaagaatgacatgacagaataatc 17176021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 28675145 - 28675213
Alignment:
Q  372 caagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||||| ||||||||||||||||||||||||       |||||||||||||||| | ||||||||    
T  28675145 caagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgtcggaataatc 28675213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 17705530 - 17705465
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       ||| |||||||||||| ||||||||||    
T  17705530 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgacagaataatc 17705465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 439
Target Start/End: Complemental strand, 18889762 - 18889698
Alignment:
Q  374 agagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataat 439  Q
    |||||||| |||||||||||||||||||| |||       ||||||||||||||||||||||||||    
T  18889762 agagcaatgctatatatcaagaaagattt-atcaagaaaatttcaagaatgacatggcagaataat 18889698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 2309490 - 2309423
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||||  |||||||||||||||||||||||       ||| ||||||| |||||||||||||||    
T  2309490 aagagcaatgttatatatcaagaaagattttatcaaaatttttttaagaatggcatggcagaataatc 2309423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 6031806 - 6031741
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| |||||||||||||||||||| |||       ||| |||||||||||| ||||||||||    
T  6031806 gagcaatgctatatatcaagaaagatttcatcaataaaattttaagaatgacatgacagaataatc 6031741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 10442856 - 10442789
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  10442856 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 10442789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 31078885 - 31078819
Alignment:
Q  374 agagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  31078885 agagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 31078819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 22199261 - 22199326
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  22199261 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 22199326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 49387953 - 49387888
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  49387953 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 49387888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 21802389 - 21802322
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||| ||||||||       |||||||||||||||||||||||||||    
T  21802389 aagagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaataatc 21802322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 24128237 - 24128304
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||| ||       |||||||||||||||||||||||||||    
T  24128237 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 24128304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 375 - 438
Target Start/End: Original strand, 36072947 - 36073010
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataa 438  Q
    ||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  36072947 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataa 36073010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 44893424 - 44893491
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||| ||       |||||||||||||||||||||||||||    
T  44893424 aagagcaatgctatatatcaagaaagattttttcaaaaaaatttcaagaatgacatggcagaataatc 44893491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 47290064 - 47290131
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||| ||       |||||||||||||||||||||||||||    
T  47290064 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 47290131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 33530754 - 33530688
Alignment:
Q  374 agagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||| ||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  33530754 agagcaatgctatatatcaagaaagattttatcaagaaaaattcaagaatgacatggcagaataatc 33530688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 2624837 - 2624902
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       |||||||||||| ||||||||||||||    
T  2624837 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaaatggcagaataatc 2624902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 438
Target Start/End: Original strand, 4751445 - 4751509
Alignment:
Q  374 agagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataa 438  Q
    |||||||| ||||||||||||||||||||||||       || ||||||||||||||||||||||    
T  4751445 agagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaataa 4751509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 7745176 - 7745112
Alignment:
Q  376 agcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||| ||||||||||||||||||||||||       ||| |||||||||||||||||||||||    
T  7745176 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 7745112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 23964532 - 23964465
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||||  |||||||||||||||||||||||       ||| |||||||||||||||||||||||    
T  23964532 aagagcaatgttatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaataatc 23964465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 36073348 - 36073415
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||| ||| ||||||||||||||||||||| ||       |||||||||||||||||||||||||||    
T  36073348 aagaggaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 36073415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 50156646 - 50156578
Alignment:
Q  372 caagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||||| |||||||| |||||||||||| ||       ||| |||||||||||||||||||||||    
T  50156646 caagagcaatgctatatattaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 50156578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 40214988 - 40215053
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  40214988 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 40215053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 16045865 - 16045798
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||| ||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  16045865 aagagtaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 16045798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 9910358 - 9910293
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||| ||       |||||||||||||||||||||||||||    
T  9910358 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 9910293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 44094698 - 44094763
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||| ||||||||       |||||||||||||||||||||||||||    
T  44094698 gagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaataatc 44094763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 3559615 - 3559682
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||| |||| ||||||||||||||||||||||||       ||| |||||||||||||||||||||||    
T  3559615 aagaacaatgctatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaataatc 3559682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 18404440 - 18404507
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||||||       ||| ||||||||||||| |||||||||    
T  18404440 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggtagaataatc 18404507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 19015402 - 19015469
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||| ||       |||||||||||| ||||||||||||||    
T  19015402 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaataatc 19015469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 25463674 - 25463741
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| |||||||||||||||||||||||        ||| |||||||||||||||||||||||    
T  25463674 aagagcaatgctatatatcaagaaagattttatgaagaaaattttaagaatgacatggcagaataatc 25463741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 41876508 - 41876442
Alignment:
Q  374 agagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||| ||||||||||||||||||||| ||       ||| |||||||||||||||||||||||    
T  41876508 agagcaatgctatatatcaagaaagattttttcaaaaaaattttaagaatgacatggcagaataatc 41876442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 36966773 - 36966708
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||| ||       |||||||||||| ||||||||||||||    
T  36966773 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaataatc 36966708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 37821899 - 37821834
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||| ||       |||||||||||| ||||||||||||||    
T  37821899 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaataatc 37821834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 25973412 - 25973478
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||||  |||||||||||||||||||||||       |||||||||||||| ||||||||||||    
T  25973412 aagagcaatgttatatatcaagaaagattttatcatgaaaatttcaagaatgaca-ggcagaataatc 25973478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 12840 - 12907
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||| ||       |||||||||||||||||||||||||||    
T  12840 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 12907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 2477634 - 2477701
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||||||       ||| |||||||||||||||||||||||    
T  2477634 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 2477701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 6043578 - 6043511
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||||||       ||||||||||||||||| |||||||||    
T  6043578 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggaagaataatc 6043511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 11361196 - 11361131
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       ||| |||||||||||||||||||||||    
T  11361196 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 11361131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 438
Target Start/End: Original strand, 3362777 - 3362841
Alignment:
Q  374 agagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataa 438  Q
    |||||||| ||||||||||||||||||||||||       || ||||||||||||||||||||||    
T  3362777 agagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaataa 3362841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 8145384 - 8145440
Alignment:
Q  384 tatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  8145384 tatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 8145440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 438
Target Start/End: Complemental strand, 38899792 - 38899728
Alignment:
Q  374 agagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataa 438  Q
    |||||||| ||||||||||||||||||||||||       || ||||||||||||||||||||||    
T  38899792 agagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaataa 38899728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 4892200 - 4892267
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||| ||       ||| |||||||||||||||||||||||    
T  4892200 aagagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 4892267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 14138666 - 14138733
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||||  |||||||||||||||||||||||       |||||||||| ||||||||||||||||    
T  14138666 aagagcaatgttatatatcaagaaagattttatcaagaaaatttcaagaattacatggcagaataatc 14138733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 25398238 - 25398303
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||| ||       ||| |||||||||||||||||||||||    
T  25398238 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 25398303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 33584394 - 33584329
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||| ||       ||| |||||||||||||||||||||||    
T  33584394 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 33584329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 440
Target Start/End: Complemental strand, 37321865 - 37321793
Alignment:
Q  369 aaacaagagcaattctatatatc-aagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||| ||||||| ||||||||| |||||||||||||||       ||| |||||||||||||||||||||||    
T  37321865 aaacaggagcaatgctatatatctaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 37321793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 438
Target Start/End: Original strand, 12850801 - 12850864
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataa 438  Q
    ||||||| ||||||||||||||||||||||||       || ||| ||||||||||||||||||    
T  12850801 gagcaatgctatatatcaagaaagattttatcaagaaaattccaaaaatgacatggcagaataa 12850864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 3522071 - 3522006
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||  |||||||||||||||||||| ||       |||||| ||||||||||||||||||||    
T  3522071 gagcaatgttatatatcaagaaagattttttcaagaaaatttcaaaaatgacatggcagaataatc 3522006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 2754715 - 2754782
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||||||       ||| |||||||||||||||||||||||    
T  2754715 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 2754782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 3574594 - 3574527
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||||||       ||| |||||||||||||||||||||||    
T  3574594 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 3574527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 373 - 439
Target Start/End: Original strand, 11347266 - 11347332
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataat 439  Q
    ||||||||| ||||||||||||||||||||||||       ||| ||||||||||||||||||||||    
T  11347266 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataat 11347332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 6041884 - 6041949
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       |||||||||||||||| ||||||||||    
T  6041884 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 6041949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 37217118 - 37217053
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       ||| |||||||||||||||||||||||    
T  37217118 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 37217053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 3137482 - 3137414
Alignment:
Q  372 caagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||||| ||||||||||||||||||||| ||       ||||||||||||||||||| |||||||    
T  3137482 caagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcaaaataatc 3137414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 33113791 - 33113858
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| |||||||||||||||||||||||        |||||||||| ||||||||||||||||    
T  33113791 aagagcaatgctatatatcaagaaagattttattaagaaaatttcaagaattacatggcagaataatc 33113858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 440
Target Start/End: Original strand, 48160895 - 48160970
Alignment:
Q  365 tttcaaacaagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| | ||||||| ||||||||||||||||||||||||       ||| |||||||| ||||||||||||||    
T  48160895 tttcaaaaatgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgatatggcagaataatc 48160970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 3456064 - 3456129
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       ||| |||||||| ||||||||||||||    
T  3456064 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgatatggcagaataatc 3456129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 30385011 - 30385076
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| |||| |||||||||||||||||||       |||||| ||||||||||||||||||||    
T  30385011 gagcaatgctatttatcaagaaagattttatcaagaaaatttcaaaaatgacatggcagaataatc 30385076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 34482977 - 34482910
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||| ||       |||||||||||| |||| |||||||||    
T  34482977 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggtagaataatc 34482910  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 37522051 - 37522118
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||| ||       ||| |||||||||||| ||||||||||    
T  37522051 aagagcaatactatatatcaagaaagattttttcaagaaaattttaagaatgacatgacagaataatc 37522118  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 47402663 - 47402630
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatc 406  Q
    ||||||||| ||||||||||||||||||||||||    
T  47402663 aagagcaatgctatatatcaagaaagattttatc 47402630  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 19650965 - 19650900
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||  ||||||| |||||||||||||||       ||| |||||||||||||||||||||||    
T  19650965 gagcaatgttatatattaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 19650900  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 42297352 - 42297384
Alignment:
Q  374 agagcaattctatatatcaagaaagattttatc 406  Q
    |||||||| ||||||||||||||||||||||||    
T  42297352 agagcaatgctatatatcaagaaagattttatc 42297384  T

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Target: scaffold0178 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 11621 - 11686
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| ||||||||||||||||||||||||       |||||||||||||||| ||||||||||    
T  11621 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 11686  T

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Target: scaffold0085 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 47850 - 47915
Alignment:
Q  375 gagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||| |||| |||||||||||||||||||       |||||||||||||||||||||||||||    
T  47850 gagcaatgctatttatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 47915  T

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Target: scaffold0665 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 3069 - 3133
Alignment:
Q  376 agcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||| ||||||||||||||||||||||||       ||| |||||||||||||||||||||||    
T  3069 agcaatgctatatatcaagaaagattttatcaataaaattttaagaatgacatggcagaataatc 3133  T

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Target: scaffold0204 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 440
Target Start/End: Original strand, 4394 - 4461
Alignment:
Q  373 aagagcaattctatatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    ||||||||| ||||||||||||||||||||| ||       ||| |||||||||||||||||||||||    
T  4394 aagagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 4461  T

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Target: scaffold0228 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 8413 - 8467
Alignment:
Q  386 tatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||||    
T  8413 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 8467  T

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Target: scaffold0228; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 15995 - 16049
Alignment:
Q  386 tatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||||    
T  15995 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 16049  T

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Target: scaffold0228; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 25947 - 26001
Alignment:
Q  386 tatatcaagaaagattttatcnnnnnnntttcaagaatgacatggcagaataatc 440  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||||    
T  25947 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 26001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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