View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0304_low_1 (Length: 570)
Name: NF0304_low_1
Description: NF0304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 29 - 557
Target Start/End: Complemental strand, 18429792 - 18429258
Alignment:
| Q |
29 |
atcgtgatcatgatttaaacctgttgtatgcgcaaa-------tcctactcgatttgagatttcaaacacctacactacgtccattcatataatttgtga |
121 |
Q |
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| T |
18429792 |
atcgtgatcatgatttaaacctgttgtatgcgcacagcgcatatcctactcgatttgagatttcaaacacctacactacgtccattcatataatttgtga |
18429693 |
T |
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| Q |
122 |
aggaaatgtgaggaccagattatatgatctctgcaatgaccagattatatcatcttgaacatttcttga---ccagctaattcttcttcagataagctct |
218 |
Q |
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| T |
18429692 |
aggaaatgtgaggaccagattatatgatctctgcaatgaccatattatatcatcttgaacatttcttttaatccagctaattcttcttcagataagctct |
18429593 |
T |
|
| Q |
219 |
ctgcaatgacctgaaaaacgaaaaggatggtaaaatgaaaaaggttccaactataacatctcatcttaaccttgcagccataaatccacgatgaaagact |
318 |
Q |
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| T |
18429592 |
ctgcaacgacctgaaaaacgaaaaggatggtaaaatgaaaaaggttcaaactataacatctcatcttaaccttgcagccataaatccacgatgaaagact |
18429493 |
T |
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| Q |
319 |
tccgatttacacgcatttagtgtaattatcgtcatacttaattttaagtataactattatgtccagctcacaagataaacgaacttgaaatctccatcca |
418 |
Q |
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| T |
18429492 |
tccaatttacacgcatttagtgtaattttcgacatacttaattttaagtattactattatgtccagctcacaagataaacgaacttgaaatc----taca |
18429397 |
T |
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| Q |
419 |
tattaacagacttgctacaaaaatgaaaatggagatttcttgagccttatctaaaatttgataactagttaatgaaactctttctttctatcatttaata |
518 |
Q |
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| T |
18429396 |
tattaacagacttgctacaaaaatgaaaatggagatttcttgagccttatctaaaatttgataactagttaatgaaactctttctttctatcatttaata |
18429297 |
T |
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| Q |
519 |
taaactttaacgttagtatcatatggttggcggcaacag |
557 |
Q |
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| T |
18429296 |
taaactttaacgttagtatcatatggttggcggcaacag |
18429258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 169 - 336
Target Start/End: Complemental strand, 18402195 - 18402024
Alignment:
| Q |
169 |
tatcatcttgaacatttcttga---ccagctaattcttcttcagataagctctctgcaatgacctgaaaaacgaaaaggatggtaaaatgaaaaa-ggtt |
264 |
Q |
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| T |
18402195 |
tatcatcttgaacatttcttttaatccagccaattcttcttcagataagctctctgcaatgacctgaaaaacgcaaaggatggtaaaatgaaaaaaggtt |
18402096 |
T |
|
| Q |
265 |
ccaactataacatctcatcttaaccttgcagccataaatccacgatgaaagacttccgatttacacgcattt |
336 |
Q |
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| T |
18402095 |
caaactataacatctcatcttaaccttgcagccagaaatccacgatgaaagacttccgatttacacgcattt |
18402024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 477 - 557
Target Start/End: Complemental strand, 18410213 - 18410133
Alignment:
| Q |
477 |
tgataactagttaatgaaactctttctttctatcatttaatataaactttaacgttagtatcatatggttggcggcaacag |
557 |
Q |
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| T |
18410213 |
tgataactagttaatgaaactctttctttctatcatttaatataaactttaacgttagtatcatatggttggcggcaacag |
18410133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 435 - 501
Target Start/End: Complemental strand, 18432136 - 18432071
Alignment:
| Q |
435 |
acaaaaatgaaaatggagatttcttgagccttatctaaaatttgataactagttaatgaaactcttt |
501 |
Q |
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|||||||| ||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||| |
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| T |
18432136 |
acaaaaataaaaattgagatttcttgagccttatctaata-ttgataactagtaaatgaaactcttt |
18432071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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