View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0304_low_10 (Length: 308)
Name: NF0304_low_10
Description: NF0304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 17734715 - 17734464
Alignment:
| Q |
1 |
acacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccgat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17734715 |
acacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggt |
17734616 |
T |
|
| Q |
101 |
ggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaac |
200 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17734615 |
ggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggcagtgatcataatgagtacggtgttgagcgataatggtgaaaac |
17734516 |
T |
|
| Q |
201 |
acaacgttcttttcattgagttttttatcggataacaagtgtttgatgatgt |
252 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||| |||||| |
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| T |
17734515 |
acaacgttcttttcattgagtttttgattggataacaagtgtttggtgatgt |
17734464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 17743955 - 17743704
Alignment:
| Q |
1 |
acacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccgat |
100 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||| || |||| || |||||||||||||||||||||| |||||||||||| ||||||||||||||| | |
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| T |
17743955 |
acacaccattgacgtaagacaagcaagggccaccagcacgagccccgtcggagagcacagaagaaacaacctgagagcataacgatttgagatcaccggt |
17743856 |
T |
|
| Q |
101 |
ggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaac |
200 |
Q |
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| T |
17743855 |
ggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaac |
17743756 |
T |
|
| Q |
201 |
acaacgttcttttcattgagttttttatcggataacaagtgtttgatgatgt |
252 |
Q |
| |
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|||| |||||||||||||||||||| || |||||||||||||||| |||||| |
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| T |
17743755 |
acaatgttcttttcattgagtttttgattggataacaagtgtttggtgatgt |
17743704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 16720731 - 16720480
Alignment:
| Q |
1 |
acacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccgat |
100 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
16720731 |
acacaccattgacgtaagacaagcaagggccaccagcgggagcgccatcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggt |
16720632 |
T |
|
| Q |
101 |
ggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaac |
200 |
Q |
| |
|
||||||||||||||| ||| |||||||||| ||||| | |||||||||||||||||||| |||||| |||| |||||||| |||||||||||||||||| |
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| T |
16720631 |
ggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggagccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaac |
16720532 |
T |
|
| Q |
201 |
acaacgttcttttcattgagttttttatcggataacaagtgtttgatgatgt |
252 |
Q |
| |
|
|||||||||| ||| |||||||||| || |||||||||||||||| |||||| |
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|
| T |
16720531 |
acaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgt |
16720480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 17697745 - 17697494
Alignment:
| Q |
1 |
acacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccgat |
100 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17697745 |
acacaccattgacgtaagacaagcaagggccaccagcgggagcgccatcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggt |
17697646 |
T |
|
| Q |
101 |
ggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaac |
200 |
Q |
| |
|
||||||||||||||| ||| |||||||||| ||||| | |||||||||||||||||||| |||||| |||| |||||||| |||||||||||||||||| |
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|
| T |
17697645 |
ggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggagccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaac |
17697546 |
T |
|
| Q |
201 |
acaacgttcttttcattgagttttttatcggataacaagtgtttgatgatgt |
252 |
Q |
| |
|
|||||||||| ||| |||||||||| || |||||||||||||||| |||||| |
|
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| T |
17697545 |
acaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgt |
17697494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 17716664 - 17716413
Alignment:
| Q |
1 |
acacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccgat |
100 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||| |
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|
| T |
17716664 |
acacaccattgacgtaagacaagcaagggccaccagcgggagcgccatcggagagcacagaagaaaccagccgagagtataaggatttgagattaccggg |
17716565 |
T |
|
| Q |
101 |
ggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaac |
200 |
Q |
| |
|
|||||| |||||||||||| |||||||||| ||||| | |||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| |
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| T |
17716564 |
ggattctgactggaggaaggagagaagttgtttttgagtgggaccctcggagccggtagcgatcatactgagcacggtgttgagcgataatggtgaaaac |
17716465 |
T |
|
| Q |
201 |
acaacgttcttttcattgagttttttatcggataacaagtgtttgatgatgt |
252 |
Q |
| |
|
||||| |||||||| |||||||||| || |||||||||||||||| |||||| |
|
|
| T |
17716464 |
acaacattcttttctttgagtttttgattggataacaagtgtttggtgatgt |
17716413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 16729604 - 16729353
Alignment:
| Q |
1 |
acacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccgat |
100 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||| ||||||| |||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
16729604 |
acacaccattgacgtaagacaagcaagggccaccagcgggagtgccatcggagagcacagaagaaaccagccgagagtataaggatttgagatcaccggg |
16729505 |
T |
|
| Q |
101 |
ggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaac |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| | |||||||| ||||| ||||| ||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
16729504 |
agattcagactggaggaaggagagaagttgtttttgagtgggacccttggagctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaac |
16729405 |
T |
|
| Q |
201 |
acaacgttcttttcattgagttttttatcggataacaagtgtttgatgatgt |
252 |
Q |
| |
|
|||||||||||||| ||||||| || || |||||||||||||||| |||||| |
|
|
| T |
16729404 |
acaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgt |
16729353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 17706676 - 17706425
Alignment:
| Q |
1 |
acacaccattgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccgat |
100 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||| ||||||| |||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
17706676 |
acacaccattgacgtaagacaagcaagggccaccagcgggagtgccatcggagagcacagaagaaaccagccgagagtataaggatttgagatcaccggg |
17706577 |
T |
|
| Q |
101 |
ggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggagccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaac |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| | |||||||| ||||| ||||| ||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
17706576 |
agattcagactggaggaaggagagaagttgtttttgagtgggacccttggagctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaac |
17706477 |
T |
|
| Q |
201 |
acaacgttcttttcattgagttttttatcggataacaagtgtttgatgatgt |
252 |
Q |
| |
|
|||||||||||||| ||||||| || || |||||||||||||||| |||||| |
|
|
| T |
17706476 |
acaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgt |
17706425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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