View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0304_low_7 (Length: 386)
Name: NF0304_low_7
Description: NF0304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0304_low_7
[» ] scaffold0015 (1 HSPs)
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 61 - 378
Target Start/End: Original strand, 37996785 - 37997100
Alignment:
Q
61
agaggaaatcctactgtaacgttctcattctctcccttatatcatatatcatttcggttctaaaccaaaattcgtgaagggctataattgttaaactctt
160
Q
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
37996785
agaggaaatcctactgtaacgttctcattctctccctcatatcatatatcatttcggttctaaaccaaaattcgtgaagggctataattgttaaactctt
37996884
T
Q
161
ctggtgaaatcttatttctggtgaaatctttcaaaatgtaggtggacataattgttaaactcttcaaaagagtttgaaatatgctttgcggctcaggcta
260
Q
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
37996885
ctggtgaaatcctatttctggtgaaatctttcaaaatgtaggtggacataattgttaaactcttcaaaagagtttgaaatatgctttgcggctcaggcta
37996984
T
Q
261
cggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgcttgaaaacttgc
360
Q
||||||||||| ||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
T
37996985
cggtacatgacctcaatgggtctcctatcgtaggtgacttgtcttt--tttttttttttataaaattgatgtcaaccattggatgtgcttgaaaactttt
37997082
T
Q
361
gaagaccatagtattatc
378
Q
||||||||||||||||||
T
37997083
gaagaccatagtattatc
37997100
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 250 - 377
Target Start/End: Complemental strand, 2947672 - 2947548
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct
349
Q
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
T
2947672
ggctcaggctacggtacatgacctcaatgggtctcctaccgtaggtgacttgacttt---ttttttttttacaaaattgatgtcaaccattggatgtgct
2947576
T
Q
350
tgaaaacttgcgaagaccatagtattat
377
Q
||||||||| |||||||||||||||||
T
2947575
tgaaaacttttgaagaccatagtattat
2947548
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 250 - 378
Target Start/End: Complemental strand, 6484716 - 6484586
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtcttt--cnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtg
347
Q
|||||| ||||||||||||||| ||||||| ||||||||||||||||||||| |||| | ||||||||||||||||| ||||||||||
T
6484716
ggctcaagctacggtacatgacctcaatggatctcctaccgtaggtgacttgactttttctttcttttttttacaaaattgatgtcaactattggatgtg
6484617
T
Q
348
cttgaaaacttgcgaagaccatagtattatc
378
Q
||||||||||| ||||||||||||||||||
T
6484616
cttgaaaacttttgaagaccatagtattatc
6484586
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 1483977 - 1484035
Alignment:
Q
320
acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
T
1483977
acaaaattgatgtcaaccattggatgtgcttgaaaacttttgaagaccatagtattatc
1484035
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 250 - 378
Target Start/End: Complemental strand, 33143071 - 33142947
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct
349
Q
|||| ||||||||||||||||| || |||||||| ||||||||||||||||| |||| | ||||||||||||||||||| ||||||||
T
33143071
ggctaaggctacggtacatgacctcgatgggtcttctaccgtaggtgacttgacttt----tttttttttataaaattgatgtcaaccatttgatgtgct
33142976
T
Q
350
tgaaaacttgcgaagaccatagtattatc
378
Q
||||||||| ||||||||||||||||||
T
33142975
tgaaaacttttgaagaccatagtattatc
33142947
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 47490772 - 47490828
Alignment:
Q
322
aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||
T
47490772
aaaattgatgtcaaccattagatgtgcttaaaaacttttgaagaccatagtattatc
47490828
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 12653789 - 12653846
Alignment:
Q
321
caaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
|||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||
T
12653789
caaaattgatgtcaaccattggatgtacttgaaattttttgaagaccatggtattatc
12653846
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 37625707 - 37625764
Alignment:
Q
321
caaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
|||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||
T
37625707
caaaattgatgtcaaccattggatgtacttgaaattttttgaagaccatggtattatc
37625764
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 35241407 - 35241349
Alignment:
Q
320
acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
|||||| ||||||||| ||||||||| ||||||||||| |||||| |||||||||||
T
35241407
acaaaactgatgtcaatgattggatgtacttgaaaacttttgaagactatagtattatc
35241349
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 37996739 - 37996768
Alignment:
Q
32
aggaagacacggtgcatgcaattgttttta
61
Q
||||||||||||||||||||||||||||||
T
37996739
aggaagacacggtgcatgcaattgttttta
37996768
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0015 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 250 - 378
Target Start/End: Original strand, 34923 - 35050
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct
349
Q
|||||||||||| ||||||||| |||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||
T
34923
ggctcaggctaccgtacatgacttcaatgggtctcctaccgtaagtgacttgacttt-ttttttttttttacaaaattgatgtcaaccattggatgtgct
35021
T
Q
350
tgaaaacttgcgaagaccatagtattatc
378
Q
||||||||| ||||||||||||||||||
T
35022
tgaaaacttttgaagaccatagtattatc
35050
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 250 - 378
Target Start/End: Complemental strand, 2707758 - 2707632
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct
349
Q
|||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
T
2707758
ggctcaagctacggtacatgacctcaatgggtctcctaccgtaggtgacttgatttt--ttattttttttacaaaattgatgtcaaccattggatgtgct
2707661
T
Q
350
tgaaaacttgcgaagaccatagtattatc
378
Q
||||||||| ||||||||||||||||||
T
2707660
tgaaaacttttgaagaccatagtattatc
2707632
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 37784964 - 37785022
Alignment:
Q
320
acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
T
37784964
acaaaattgatgtcaaccattggatgtgcttgaaaacttttgaagaccatagtattatc
37785022
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 35971172 - 35971228
Alignment:
Q
322
aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
T
35971172
aaaattgatgtcaaccattggatgtgcttgaaaacttttgaagaccatagtattatc
35971228
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 7217788 - 7217732
Alignment:
Q
322
aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||
T
7217788
aaaattgttgtcaatcattggatgtgcttgaaaacttttgaagaccatagtattatc
7217732
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 35971098 - 35971149
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg
301
Q
|||||||||||||||||||||| |||||||||||| |||| ||| |||||||
T
35971098
ggctcaggctacggtacatgacctcaatgggtctcataccatagatgacttg
35971149
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 31128221 - 31128172
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact
299
Q
|||| ||||||||||| |||||||||||||||||||||||||||||||
T
31128221
ggcttaggctacggtaggagacatcaatgggtctcctaccgtaggtgact
31128172
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 45275023 - 45274966
Alignment:
Q
321
caaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
|||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||
T
45275023
caaaattgatgtcaaccattggatgtacttgaaattttttgaagaccatggtattatc
45274966
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 37784896 - 37784947
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg
301
Q
||||||||||||||||||||| | |||| |||||||||| |||||||||||
T
37784896
ggctcaggctacggtacatgatcttaatgagtctcctaccataggtgacttg
37784947
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 40225432 - 40225481
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact
299
Q
||||| |||||||||| ||| |||||||||||||||||||||||||||
T
40225432
ggctctggctacggtaggcgacctcaatgggtctcctaccgtaggtgact
40225481
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 250 - 378
Target Start/End: Complemental strand, 50036509 - 50036383
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct
349
Q
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||
T
50036509
ggctcaggctacggtacatgacctcaatgggtctcctaccgtaggtgacttgacttt--tttttttttttacaaaattgatgtcaactattggatgtgct
50036412
T
Q
350
tgaaaacttgcgaagaccatagtattatc
378
Q
||||||||| |||||||||| |||||||
T
50036411
tgaaaactttagaagaccataatattatc
50036383
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 30593771 - 30593829
Alignment:
Q
320
acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
||||||||||||||||||||||||||| ||||||| ||| |||||| ||| |||||||
T
30593771
acaaaattgatgtcaaccattggatgtacttgaaagcttttgaagactataatattatc
30593829
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 250 - 378
Target Start/End: Complemental strand, 23989479 - 23989351
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct
349
Q
|||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
T
23989479
ggctcaggctacggtaaatggcctcaatgggtctcctaccgtaggtgacttgacttttttttttttttttacaaaattgatgtcaaccattggatgtgct
23989380
T
Q
350
tgaaaacttgcgaagaccatagtattatc
378
Q
||||||||| ||||| ||||||||||||
T
23989379
tgaaaacttttgaagatcatagtattatc
23989351
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 29101110 - 29101054
Alignment:
Q
322
aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
T
29101110
aaaattgatgtcaatcattggatgtgcttgaaaacttttgaagaccatagtattatc
29101054
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 12198060 - 12198096
Alignment:
Q
210
aattgttaaactcttcaaaagagtttgaaatatgctt
246
Q
|||||||||||||||||||||||||||||||||||||
T
12198060
aattgttaaactcttcaaaagagtttgaaatatgctt
12198096
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 299
Target Start/End: Original strand, 16492966 - 16493020
Alignment:
Q
245
tttgcggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact
299
Q
|||| ||||| |||||||||| ||| |||||||||||||||||||||||||||
T
16492966
tttgtggctctggctacggtatgcgacctcaatgggtctcctaccgtaggtgact
16493020
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 5852908 - 5852957
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact
299
Q
||||| |||||||||| ||| |||||||||||||||||||||||||||
T
5852908
ggctccggctacggtaggcgacttcaatgggtctcctaccgtaggtgact
5852957
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 250 - 378
Target Start/End: Complemental strand, 56396691 - 56396565
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatgtgct
349
Q
|||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||| |||||||||||||||||||||||
T
56396691
ggctaaggctacggtacatgacctcaatgggtcttctaccgtaggtgacttgatttt--tttttttttttacaaaactgatgtcaaccattggatgtgct
56396594
T
Q
350
tgaaaacttgcgaagaccatagtattatc
378
Q
||||||||| ||||||||||||||||||
T
56396593
tgaaaacttttgaagaccatagtattatc
56396565
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 6231160 - 6231102
Alignment:
Q
320
acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
T
6231160
acaaaattgatgtcaaccattggatgtgcttgaaaacttttgaagaccatagtattatc
6231102
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 39467586 - 39467535
Alignment:
Q
60
tagaggaaatcctactgtaacgttctcattctctcccttatatcatatatca
111
Q
|||| |||||||||||||||| |||||||||||||||| |||||||||||||
T
39467586
tagacgaaatcctactgtaacattctcattctctccctcatatcatatatca
39467535
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 6231242 - 6231194
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgac
298
Q
|||| ||||||||||||||||| ||||||||||| ||||||||||||||
T
6231242
ggctaaggctacggtacatgacctcaatgggtcttctaccgtaggtgac
6231194
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 39466581 - 39466545
Alignment:
Q
210
aattgttaaactcttcaaaagagtttgaaatatgctt
246
Q
|||||||||||||||||||||||||||||||||||||
T
39466581
aattgttaaactcttcaaaagagtttgaaatatgctt
39466545
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 25644199 - 25644249
Alignment:
Q
249
cggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact
299
Q
||||| ||||||||||| ||| |||||||||||||||||||||||||||
T
25644199
cggcttaggctacggtaggagacctcaatgggtctcctaccgtaggtgact
25644249
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 39467527 - 39467490
Alignment:
Q
168
aatcttatttctggtgaaatctttcaaaatgtaggtgg
205
Q
|||| |||||||||||||||||| ||||||||||||||
T
39467527
aatcctatttctggtgaaatcttccaaaatgtaggtgg
39467490
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 41197226 - 41197169
Alignment:
Q
249
cggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgtcttt
306
Q
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
T
41197226
cggctcaggctacggtacatgacctcaatgggtctcctaccgtaggtgacttgacttt
41197169
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 41197147 - 41197089
Alignment:
Q
320
acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
T
41197147
acaaaattgatgtcaaccattggatgtgtttgaaaacttttgaagaccatagtattatc
41197089
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 35470840 - 35470895
Alignment:
Q
322
aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
T
35470840
aaaattgatgtcaaccattgg-tgtgcttgaaaacttttgaagaccatagtattatc
35470895
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 35470769 - 35470820
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg
301
Q
||||||||||||||||||||| ||||| ||||||||| | |||||||||||
T
35470769
ggctcaggctacggtacatgatctcaataggtctcctaacataggtgacttg
35470820
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 43067070 - 43067119
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact
299
Q
|||| ||||||||||| ||| |||||||||||||||||||||||||||
T
43067070
ggcttaggctacggtaggagacctcaatgggtctcctaccgtaggtgact
43067119
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 250 - 378
Target Start/End: Original strand, 26419854 - 26419986
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg----tctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatg
345
Q
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||| | ||||||||||||||||||| ||||
T
26419854
ggctcaggctacggtacatgacctcaatgggtctcctaccataggtgacttgattttttttttattttttttttataaaattgatgtcaaccattagatg
26419953
T
Q
346
tgcttgaaaacttgcgaagaccatagtattatc
378
Q
||||||||||||| ||||||||||||||||||
T
26419954
tgcttgaaaacttttgaagaccatagtattatc
26419986
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 14800599 - 14800543
Alignment:
Q
322
aaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
T
14800599
aaaattgatgtcaatcattggatgtgcttgaaaacttttgaagaccatagtattatc
14800543
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 14800675 - 14800623
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttgt
302
Q
|||| |||||||||||||||| ||||||||||||||||||||||||||||||
T
14800675
ggcttaggctacggtacatgatctcaatgggtctcctaccgtaggtgacttgt
14800623
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 49304790 - 49304732
Alignment:
Q
320
acaaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
T
49304790
acaaaattgatgtcaaccattggatgtgcttgaaaacttttgaagactatagtattatc
49304732
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 378
Target Start/End: Complemental strand, 16264844 - 16264712
Alignment:
Q
251
gctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg-----tctttcnnnnnnnnnnnnacaaaattgatgtcaaccattggatg
345
Q
|||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||| ||||||||||||
T
16264844
gctcaggctatggtacatgacctcaatgggtctcctaccgtaggtgacttgactttttttttttttttttttttacaaaattgatgttaaccattggatg
16264745
T
Q
346
tgcttgaaaacttgcgaagaccatagtattatc
378
Q
||||||||||||| ||||| ||||||||||||
T
16264744
tgcttgaaaacttttgaagatcatagtattatc
16264712
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 301
Target Start/End: Complemental strand, 49304865 - 49304814
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgacttg
301
Q
|||||| ||||| ||||||||| ||||||||||||||||||||| |||||||
T
49304865
ggctcaagctacagtacatgacctcaatgggtctcctaccgtagatgacttg
49304814
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 47139624 - 47139567
Alignment:
Q
321
caaaattgatgtcaaccattggatgtgcttgaaaacttgcgaagaccatagtattatc
378
Q
|||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||
T
47139624
caaaattgatgtcaaccattggatgtacttgaaattttttgaagaccatggtattatc
47139567
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 24982195 - 24982245
Alignment:
Q
249
cggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact
299
Q
||||| ||||||||||| ||| |||||||||||||||||||||||||||
T
24982195
cggcttaggctacggtaggagacctcaatgggtctcctaccgtaggtgact
24982245
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 3898991 - 3898942
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact
299
Q
|||| ||||||||||| ||| |||||||||||||||||||||||||||
T
3898991
ggcttaggctacggtaggagacctcaatgggtctcctaccgtaggtgact
3898942
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 26441482 - 26441531
Alignment:
Q
250
ggctcaggctacggtacatgacatcaatgggtctcctaccgtaggtgact
299
Q
|||| |||||||||||| ||| |||||||||||| ||||||||||||||
T
26441482
ggcttaggctacggtacgagacctcaatgggtctcttaccgtaggtgact
26441531
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 354
Target Start/End: Original strand, 46210517 - 46210550
Alignment:
Q
321
caaaattgatgtcaaccattggatgtgcttgaaa
354
Q
|||||||||||||||||||||||||| |||||||
T
46210517
caaaattgatgtcaaccattggatgtacttgaaa
46210550
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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