View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0304_low_8 (Length: 344)
Name: NF0304_low_8
Description: NF0304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0304_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 30 - 340
Target Start/End: Original strand, 31063080 - 31063390
Alignment:
| Q |
30 |
atacattaggtaatatacaacaaatgtaaacttggcgaaacaatgtaagacacttgattcagcagaaaaatataaatgcgagatcaaaccattgtagctc |
129 |
Q |
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| T |
31063080 |
atacattaggtaatatacaacaaatgtaaacttggcgaaacaatgtaagacacttgattcagcaaaaaaatataaatgcgagatcaaaccattgtagctc |
31063179 |
T |
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| Q |
130 |
tcatcatgccattatctctaccccatcatcactcttaccggcatcaatttcattacctatcctctgaacactcttataagtatacctctttgctaagaag |
229 |
Q |
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| T |
31063180 |
tcatcatgccatcatgtctaccccatcatcactcttaccggcatcaatttcattacctatcctctgaacactcttataagtatacctctttgctaagaag |
31063279 |
T |
|
| Q |
230 |
agataagcacacaaattcaaagcattgataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaacttttaccat |
329 |
Q |
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| T |
31063280 |
agataagcacacaaattcaaagcattgataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaacttttaccat |
31063379 |
T |
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| Q |
330 |
tcttttctgtc |
340 |
Q |
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| T |
31063380 |
tcttttctgtc |
31063390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 125 - 340
Target Start/End: Original strand, 31074588 - 31074800
Alignment:
| Q |
125 |
agctctcatcatgccattatctctaccccatcatcactcttaccggcatcaatttcattacctatcctctgaacactcttataagtatacctctttgcta |
224 |
Q |
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| T |
31074588 |
agctctcatcatgccatcatctctacc---tcatcactcttacaaccatcagtttcattacctatcttctgaacactcttataagtatacctctttgcta |
31074684 |
T |
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| Q |
225 |
agaagagataagcacacaaattcaaagcattgataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaactttt |
324 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31074685 |
agaagagataagcacacaaattcaaagcattaataattgccaacatccaataaaacctatccaaacgacttgaatttatatccttcccaatccaactttt |
31074784 |
T |
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| Q |
325 |
accattcttttctgtc |
340 |
Q |
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| T |
31074785 |
accattcttttctgtc |
31074800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 334
Target Start/End: Original strand, 31057169 - 31057302
Alignment:
| Q |
201 |
tcttataagtatacctctttgctaagaagagataagcacacaaattcaaagcattgataattgccaacatccaataaaacctatccaaacgacttgaatt |
300 |
Q |
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||||||||||||||||||||| || || |||| | | |||| |||||||| | | ||| |||||||||||||||||| ||||||||||||| ||||| |
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| T |
31057169 |
tcttataagtatacctctttgatatgacgagaaacacgcacacattcaaagaactaatagctgccaacatccaataaaagttatccaaacgactcgaatt |
31057268 |
T |
|
| Q |
301 |
tatatccttcccaatccaacttttaccattcttt |
334 |
Q |
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|||||||||||||||||||||||| ||| ||||| |
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| T |
31057269 |
tatatccttcccaatccaacttttgccactcttt |
31057302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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