View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0305_high_1 (Length: 707)

Name: NF0305_high_1
Description: NF0305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0305_high_1
NF0305_high_1
[»] chr4 (1 HSPs)
chr4 (29-701)||(48186572-48187249)


Alignment Details
Target: chr4 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 29 - 701
Target Start/End: Complemental strand, 48187249 - 48186572
Alignment:
Q  29 taaagtgtacgtagccagatgacagttgcacaatatttcttgcgaattttctctcagtaatttgtcgataacaagagattaaagcctataatattgggtt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48187249 taaagtgtacgtagccagatgacagttgcacaatatttcttgcgaattttctctcagtaatttgtcgataacaagagattaaagcctataatattgggtt 48187150  T
Q  129 tggtta-cattgtatattccatattttatccaatttagcgtgggactcttaactatatatatat--gttttctgcgctacaaaataacaaaactagcaaa 225  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  48187149 tggttatcattgtatattccatatttcatccaatttagcgtgggactcttaactatatatatatatgttttctgcgctacaaaataacaaaactagcaaa 48187050  T
Q  226 tggtacttttgcaaaactgcaatttgcaatcattggtcctggtttgtgtttttgctttcataacttgaaaagaacataaacagtactgattgtcactttc 325  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48187049 tggtacttttgcaaaactgcaatttgcaatcattggtcctgctttgt--ttttgctttcataacttgaaaagaacataaacaatactgattgtcactttc 48186952  T
Q  326 ctgtgttctttttatcttattcttctaaaaattaagagccaagacaagacattaagattaagcattaaaaagatatattcttaaaatagcttgtaatcaa 425  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48186951 ctgtgttctttttatcttattcttctaaaaattaagagccaagccaagatattaagattaagcattaaaaagatatattcttaaaatagcttgtaatcaa 48186852  T
Q  426 taaaagtgacagaacaacatatatagtgtacaaatcatccctaagccttaaaaaattgcagcatttctgcaatgctcgacttttctgtctataataatat 525  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48186851 taaaagtgacagaacaacatatataatgtacaaatcatccctaagccttaaaaaattgcagcatttctgcaatgctcgacttttctgtctataataatat 48186752  T
Q  526 tatatttatccaaatataaggaacttttgtctg----nnnnnnnnnctacctagacccaattaattgtgtatgggagactttttcctagctggtgaataa 621  Q
    |||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48186751 tatatttatccaaatataaggaacttttgtctgtttttttttccttctacctagacccaattaattgtgtatgggagactttttcctagctggtgaataa 48186652  T
Q  622 tccatctcagttatgtctacaaggtcctcagggagataattagaagtactcaatgattttacttttatttcctttgcttc 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48186651 tccatctcagttatgtctacaaggtcctcagggagataattagaagtactcaatgattttacttttatttcctttgcttc 48186572  T

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