View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0305_high_3 (Length: 439)

Name: NF0305_high_3
Description: NF0305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0305_high_3
NF0305_high_3
[»] chr6 (5 HSPs)
chr6 (66-430)||(28611905-28612267)
chr6 (152-206)||(21937272-21937326)
chr6 (195-427)||(11931953-11932186)
chr6 (145-206)||(24509276-24509337)
chr6 (116-212)||(24075613-24075709)
[»] chr3 (9 HSPs)
chr3 (119-430)||(52653769-52654082)
chr3 (145-430)||(33709825-33710111)
chr3 (147-423)||(40574153-40574428)
chr3 (145-245)||(16729868-16729969)
chr3 (317-369)||(23686089-23686141)
chr3 (317-369)||(24058326-24058378)
chr3 (313-402)||(31362247-31362336)
chr3 (145-212)||(29827123-29827190)
chr3 (145-212)||(49784187-49784255)
[»] chr1 (15 HSPs)
chr1 (145-430)||(49053789-49054075)
chr1 (145-430)||(49061369-49061656)
chr1 (152-212)||(44524460-44524520)
chr1 (152-212)||(48366493-48366553)
chr1 (145-212)||(21432107-21432174)
chr1 (250-427)||(42263370-42263548)
chr1 (152-212)||(29681293-29681353)
chr1 (122-212)||(35624689-35624779)
chr1 (152-193)||(1187552-1187593)
chr1 (147-207)||(43358448-43358508)
chr1 (152-206)||(10187024-10187078)
chr1 (313-427)||(50059492-50059606)
chr1 (312-423)||(52282015-52282128)
chr1 (335-427)||(17458409-17458501)
chr1 (163-207)||(19310562-19310606)
[»] chr7 (9 HSPs)
chr7 (122-352)||(12239434-12239667)
chr7 (122-246)||(37469057-37469182)
chr7 (152-212)||(5436972-5437032)
chr7 (145-236)||(1840839-1840928)
chr7 (122-207)||(24870637-24870722)
chr7 (155-286)||(24871526-24871656)
chr7 (36-116)||(23121965-23122046)
chr7 (312-423)||(34091475-34091586)
chr7 (154-207)||(23757014-23757067)
[»] chr5 (6 HSPs)
chr5 (122-352)||(9851256-9851487)
chr5 (152-430)||(29006480-29006760)
chr5 (145-206)||(2022654-2022715)
chr5 (152-267)||(36203216-36203332)
chr5 (145-206)||(43378132-43378193)
chr5 (154-406)||(9080496-9080749)
[»] chr8 (4 HSPs)
chr8 (174-430)||(12729386-12729644)
chr8 (143-285)||(28695951-28696094)
chr8 (143-369)||(44729133-44729366)
chr8 (152-206)||(25953607-25953661)
[»] chr2 (6 HSPs)
chr2 (163-427)||(14218739-14219004)
chr2 (145-193)||(42779890-42779938)
chr2 (145-212)||(716057-716123)
chr2 (174-417)||(34680971-34681211)
chr2 (145-193)||(16272137-16272185)
chr2 (143-192)||(8367466-8367515)
[»] chr4 (13 HSPs)
chr4 (169-351)||(48779718-48779902)
chr4 (145-212)||(3415594-3415661)
chr4 (163-427)||(20251408-20251674)
chr4 (127-212)||(3425142-3425227)
chr4 (156-212)||(32429726-32429782)
chr4 (152-206)||(18670543-18670597)
chr4 (289-430)||(24391830-24391970)
chr4 (152-212)||(18736861-18736921)
chr4 (145-207)||(30020297-30020359)
chr4 (152-279)||(24129170-24129298)
chr4 (152-212)||(18716188-18716248)
chr4 (228-427)||(47077960-47078154)
chr4 (152-193)||(47071133-47071174)
[»] scaffold0007 (1 HSPs)
scaffold0007 (152-424)||(217750-218013)


Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 66 - 430
Target Start/End: Original strand, 28611905 - 28612267
Alignment:
Q  66 ttattagtcagctactcattccaaaggtcacgtctattcatctattaaagagcatgtgttagaacatgtgttggttatttgctgcgataacttgatcaag 165  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||    
T  28611905 ttattagtcagctactcattccaaaggtcacatctattcatctattaaagagtatgtgttagaacatgtgttg-ttatttgctgcaataacttgatcaag 28612003  T
Q  166 aagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacacataacctttaggttcgattttcccccaccagttatgtca 265  Q
    ||||||||||| |||||||||||||||| |||||||||||| |||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||    
T  28612004 aagatgatgaatatgaacatgatgaagtgtgcacataaattttaaagtgtgtg--gaacacataacctttaggttcgatttttccccaccagttatgtca 28612101  T
Q  266 acaatatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagt 364  Q
    ||| ||||||||| |||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28612102 acagtatgtaaaatggtatatcggcgaatccccttcagaatacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcaatggtagt 28612201  T
Q  365 gtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataat 430  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28612202 atacaaaacaatgttctgtcaattcccctcgtgcactagagataagaaagaatgatttagtataat 28612267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 21937272 - 21937326
Alignment:
Q  152 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaatt 206  Q
    ||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||    
T  21937272 ataacttgaccaagaagatgatgaagatgaatatgatgaagtgtgcacataaatt 21937326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 427
Target Start/End: Complemental strand, 11932186 - 11931953
Alignment:
Q  195 tgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaaggg-tatatcagcga 292  Q
    ||||||||||||  ||||  ||||| | ||||| ||||||||||||| ||||  ||||||| ||||||| ||||   ||| ||||||| |||| ||||||    
T  11932186 tgcacataaatttcaaagcatgtgttggacacactaacctttaggtttgattcgcccccactagttatgccaaccggatgcaaaagggttataccagcga 11932087  T
Q  293 atccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattccc 391  Q
    | |||||||||| ||| ||| ||||||||| ||||||||   ||||||||||||  |||||  || ||||||| || | || ||  ||||||||| | |     
T  11932086 a-ccccttcaggatacgatgaaatccttgatgtgacttgcttattcacaccaagtttatcg-acaatggtagtttatagaataaaattctgtcaaattct 11931989  T
Q  392 ctcgtgcactagagataaaaaagaatgatttagtat 427  Q
    ||||||||||||| | || |||||||||| ||||||    
T  11931988 ctcgtgcactagataaaagaaagaatgatatagtat 11931953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 24509337 - 24509276
Alignment:
Q  145 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaatt 206  Q
    |||||| | ||||||| ||||||||||||||||||||  |||||||||| |||| |||||||    
T  24509337 tgctgcaaaaacttgaccaagaagatgatgaagatgagtatgatgaagtttgcaaataaatt 24509276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 24075613 - 24075709
Alignment:
Q  116 agcatgtgttagaacatgtgttggttatttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 212  Q
    ||||| ||||||||| |||||| |   | |||||| |||||||||| ||||||||||| |||||||| ||||  |||| |||| |||||||| ||||    
T  24075613 agcatatgttagaacctgtgttaggggtctgctgcaataacttgattaagaagatgataaagatgaatatgacaaagtgtgcatataaattccaaag 24075709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 119 - 430
Target Start/End: Complemental strand, 52654082 - 52653769
Alignment:
Q  119 atgtgttagaacatgtgttggttatttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtg 218  Q
    |||||||||||| |||||| |   ||||| || ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| |||||    
T  52654082 atgtgttagaacctgtgtttggggtttgcggcaataacttgatcaagaagatgatgaaaatgaacatgatgaagtgtgcacataaattccaaagcgtgtg 52653983  T
Q  219 tggaacaca-taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaa-gggtatatcagcgaatccccttcagg-tacaatggaat 315  Q
    ||| ||||| |||||||||||||| |||  ||| ||||||||||| ||||   ||| |||| || |||| | |||||||||||||||| |||||||||||    
T  52653982 tgggacacactaacctttaggttcaattcgccctcaccagttatgccaaccggatgcaaaatggttataccggcgaatccccttcaggatacaatggaat 52653883  T
Q  316 ccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaaga 415  Q
    ||||||||||||||| ||||||||| ||||  |||||  || ||||||| |||| || || ||||||||||||  |||||||||||||||| ||  ||||    
T  52653882 ccttgacgtgacttgcacattcacatcaagtgtatcg-acaatggtagtttacagaataaagttctgtcaattttcctcgtgcactagagaaaagtaaga 52653784  T
Q  416 atgatttagtataat 430  Q
    |||||||||||||||    
T  52653783 atgatttagtataat 52653769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 145 - 430
Target Start/End: Complemental strand, 33710111 - 33709825
Alignment:
Q  145 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcga 243  Q
    |||||| ||| ||||| |||||| ||||| | || |||||||||||||| ||||| ||||||| |||| |||||||| ||||| ||||||||||| ||||    
T  33710111 tgctgcaatatcttgaccaagaaaatgat-atgaagaacatgatgaagtgtgcac-taaattccaaagcgtgtgtgggacacactaacctttaggatcga 33710014  T
Q  244 ttttcccccaccagttatgtcaacaatatgtaaaagggtatat--cagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcaca 340  Q
    ||  || |||||||||||||||||   ||| ||||||||||||  | || ||||||||| ||| ||| || ||||||||||||||||||| |||||||||    
T  33710013 ttcacctccaccagttatgtcaaccggatgcaaaagggtatataccggctaatcccctttaggatacgatagaatccttgacgtgacttgcacattcaca 33709914  T
Q  341 ccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataat 430  Q
    |||||| |||||  || ||||||| |||| || || |||||||||| | | || |||||||||||| || ||||||||||||||||||||    
T  33709913 ccaagcgtatcga-caatggtagtttacagaataaagttctgtcaaattctctggtgcactagagaaaagaaagaatgatttagtataat 33709825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 147 - 423
Target Start/End: Original strand, 40574153 - 40574428
Alignment:
Q  147 ctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgatt 245  Q
    |||| |||||| ||| || ||||||||||| |||||||||| ||    |||||||||||||| |||||| ||||| ||||| ||||||||| | | ||||    
T  40574153 ctgcaataactcgataaaaaagatgatgaaaatgaacatgaagag---tgcacataaattctgaagtgtatgtgggacacactaacctttaagcttgatt 40574249  T
Q  246 ttcccccaccagttatgtcaacaatatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaa 344  Q
      ||||||||||| |||| ||    ||| |||| || ||||||||||||  |||||||| ||| |||||||| ||||||||||||| |||||||||| ||    
T  40574250 cacccccaccagtaatgttaattggatgcaaaatggcatatcagcgaattaccttcaggatactatggaatctttgacgtgacttgcacattcacacgaa 40574349  T
Q  345 gcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgattta 423  Q
    || ||||  ||| || |||| |||| || || |||||||||||| | ||||||||||||||| || |||||||||||||    
T  40574350 gcgtatcaatcaatgatagtttacagaataaagttctgtcaatttctctcgtgcactagagaaaagaaagaatgattta 40574428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 16729969 - 16729868
Alignment:
Q  145 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacacat-aacctttaggttcga 243  Q
    |||||| ||||||||||||| |||| |||||||||||||||||| |||| ||||||| ||||  |||| |||||||  || ||| ||||| |||||||||    
T  16729969 tgctgcaataacttgatcaataagaagatgaagatgaacatgataaagtgtgcacattaatttcaaagcgtgtgtgagactcatcaacctctaggttcga 16729870  T
Q  244 tt 245  Q
    ||    
T  16729869 tt 16729868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 23686141 - 23686089
Alignment:
Q  317 cttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtaca 369  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||    
T  23686141 cttgacgtgatttggacattcacaccaagcatatcgatcattggtagtttaca 23686089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 24058378 - 24058326
Alignment:
Q  317 cttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtaca 369  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||||||| ||||    
T  24058378 cttgacgtgatttggacattcacaccaagcatatcgatcattggtagtttaca 24058326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 402
Target Start/End: Original strand, 31362247 - 31362336
Alignment:
Q  313 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcacta 402  Q
    |||||||||||  |||| |||||||||||||| | ||||| ||  | ||||| ||||||| || ||||||||||||  ||||||||||||    
T  31362247 aatccttgacggaacttatacattcacaccaaacgtatcgatcgatagtagtttacaaaataaagttctgtcaattttcctcgtgcacta 31362336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 29827123 - 29827190
Alignment:
Q  145 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 212  Q
    |||||| |||||| || |||||| |||||||||||||  |||||||||| || |||||||||| ||||    
T  29827123 tgctgcaataactcgaccaagaaaatgatgaagatgactatgatgaagtttgaacataaattccaaag 29827190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 49784187 - 49784255
Alignment:
Q  145 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatg-aagtatgcacataaattctaaag 212  Q
    |||||| |||||||||  |||||||||||||| |||||  ||||| |||| ||||||||||||| ||||    
T  49784187 tgctgcaataacttgacgaagaagatgatgaacatgaatgtgatgaaagtgtgcacataaattccaaag 49784255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 145 - 430
Target Start/End: Complemental strand, 49054075 - 49053789
Alignment:
Q  145 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcga 243  Q
    ||||||||||| || | ||| ||||||| |||||||||||||||||||| | ||||||||||| || | |||||||| | ||| ||||||||||||||||    
T  49054075 tgctgcgataattt-accaaaaagatgaagaagatgaacatgatgaagtgtacacataaattccaatgcgtgtgtgggaaacactaacctttaggttcga 49053977  T
Q  244 ttttcccccaccagttatgtcaacaatatgtaaaagggt-atatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacac 341  Q
    ||  ||||||||||||||  ||||   ||| |||||||| ||| | |||||||||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  49053976 ttcgcccccaccagttataccaactggatgcaaaagggttataccggcgaatccccttcaggatacaatgaaatccttgacgtgacttgcacattcacac 49053877  T
Q  342 caagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataat 430  Q
    |||||||||||  || ||||||| ||||||| || |||||| ||||| |||||||||||||||||  | ||||||||||||||||||||    
T  49053876 caagcatatcga-caatggtagtttacaaaataaagttctgccaatttccctcgtgcactagagaagagaaagaatgatttagtataat 49053789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 145 - 430
Target Start/End: Complemental strand, 49061656 - 49061369
Alignment:
Q  145 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcga 243  Q
    |||||| |||| || | ||| ||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| | ||| ||  ||||||||||||    
T  49061656 tgctgcaataattttaccaaaaagatgaagaagatgaacatgatgaagtgtgcacataaattctaaagcgtgtgtgggaaacactagtctttaggttcga 49061557  T
Q  244 ttttcccccaccagttatgtcaacaatatgtaaaaggg-tatatcagcgaatccccttcag-gtacaatggaatccttgacgtgacttgtacattcacac 341  Q
    ||  ||||||||||||||| |||| | ||| ||||||| |||| |  ||||||||||||||  |||||||||||||||||||||| ||| ||||||||||    
T  49061556 ttcgcccccaccagttatgccaactagatgcaaaagggttataccgacgaatccccttcagaatacaatggaatccttgacgtgatttgcacattcacac 49061457  T
Q  342 caagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataat 430  Q
    ||| |||||||  || ||||||| |||| || || ||| |||||||| ||||||||||||||||| || ||||||||||||||||||||    
T  49061456 caaacatatcg-acaatggtagtttacagaataaagttttgtcaatttccctcgtgcactagagaaaagaaagaatgatttagtataat 49061369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 44524520 - 44524460
Alignment:
Q  152 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44524520 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattccaaag 44524460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 48366553 - 48366493
Alignment:
Q  152 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 212  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||    
T  48366553 ataacttgatcaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattcgaaag 48366493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 21432174 - 21432107
Alignment:
Q  145 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 212  Q
    |||||| ||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| ||||    
T  21432174 tgctgcaataacttgaccaagaagatgatgaagatgaacatgctgaagtgtgcacataaattccaaag 21432107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 427
Target Start/End: Original strand, 42263370 - 42263548
Alignment:
Q  250 cccaccagttatgtcaacaatatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcat 348  Q
    ||||||| |||||||||||| ||| |||| |||||| | | |||||||||||||| |||  |  |||| ||||| ||||||| ||||||| || |||| |    
T  42263370 cccaccaattatgtcaacaaaatgcaaaatggtataacggtgaatccccttcaggatactttaaaatctttgacatgacttgcacattcatactaagcgt 42263469  T
Q  349 atcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtat 427  Q
    ||||  || || || | |||||||||| ||| |||| ||| | ||||||||||||||| || |||||||||| ||||||    
T  42263470 atcgaacaatgttaatttacaaaacaaagttttgtcgatttctctcgtgcactagagaaaagaaagaatgatatagtat 42263548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 29681293 - 29681353
Alignment:
Q  152 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 212  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||||    
T  29681293 ataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattccaaag 29681353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 35624689 - 35624779
Alignment:
Q  122 tgttagaacatgtgttggttatttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 212  Q
    ||||||||| ||||||||   | |||||| ||||||||| ||||||||||||||||||||| || | ||||| ||||||||||||| ||||    
T  35624689 tgttagaacttgtgttgggggtctgctgcaataacttgaccaagaagatgatgaagatgaatattacgaagtgtgcacataaattccaaag 35624779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 1187552 - 1187593
Alignment:
Q  152 ataacttgatcaagaagatgatgaagatgaacatgatgaagt 193  Q
    |||||||||||||||||||||||||| |||| ||||||||||    
T  1187552 ataacttgatcaagaagatgatgaaggtgaatatgatgaagt 1187593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 43358448 - 43358508
Alignment:
Q  147 ctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattc 207  Q
    |||| |||| |||||||||||||||||||||||||  |||||||||  ||||||| |||||    
T  43358448 ctgcaataaattgatcaagaagatgatgaagatgactatgatgaagcgtgcacatgaattc 43358508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 10187078 - 10187024
Alignment:
Q  152 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaatt 206  Q
    |||||||||||||||||||||| || ||||  |||||||||  ||||||||||||    
T  10187078 ataacttgatcaagaagatgataaatatgactatgatgaagcgtgcacataaatt 10187024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 427
Target Start/End: Complemental strand, 50059606 - 50059492
Alignment:
Q  313 aatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaa 412  Q
    |||||| |||||||||| || ||||||| | | | ||||| ||| || |||| || | || || ||||||| |||| | ||||||||||||||| || ||    
T  50059606 aatcctggacgtgacttataaattcacatccaacgtatcgatcaatgatagtttatagaataaagttctgtaaatttctctcgtgcactagagaaaataa 50059507  T
Q  413 agaatgatttagtat 427  Q
    ||||||||| |||||    
T  50059506 agaatgattcagtat 50059492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 423
Target Start/End: Original strand, 52282015 - 52282128
Alignment:
Q  312 gaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaatt--cccctcgtgcactagagataa 409  Q
    ||||| ||||| ||||||| | |||||||||||||  |||| ||| ||||||| |||| || || ||| ||||||||   | ||| ||||||||||| ||    
T  52282015 gaatctttgacatgacttgcatattcacaccaagcgcatcgatcaatggtagtttacagaataaagttatgtcaatttctctctcatgcactagagaaaa 52282114  T
Q  410 aaaagaatgattta 423  Q
     |||||||||||||    
T  52282115 gaaagaatgattta 52282128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 427
Target Start/End: Complemental strand, 17458501 - 17458409
Alignment:
Q  335 ttcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtat 427  Q
    |||| ||||||| ||||| ||| || |||| ||||||| || ||| | || ||||  ||||||||||||||| |  |||||||||||||||||    
T  17458501 ttcaaaccaagcgtatcgatcaatgatagtttacaaaataaagttatctctattcatctcgtgcactagagaaatgaaagaatgatttagtat 17458409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 19310562 - 19310606
Alignment:
Q  163 aagaagatgatgaagatgaacatgatgaagtatgcacataaattc 207  Q
    ||||||||||| |||||| | |||||||||| |||||||||||||    
T  19310562 aagaagatgataaagatgtatatgatgaagtgtgcacataaattc 19310606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 3e-55; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 122 - 352
Target Start/End: Original strand, 12239434 - 12239667
Alignment:
Q  122 tgttagaacatgtgttggttatttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtgg 221  Q
    ||||||||| ||||||||   |||||||| |||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||  |||| ||||||||    
T  12239434 tgttagaacttgtgttggaggtttgctgcaataacttgattaagaagatgatgatgatgaatatgatgaagtgtgcacataaatttcaaagcgtgtgtgg 12239533  T
Q  222 aacaca-taacctttaggttcgattttcccccaccagttatgtc-aacaatatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatcct 318  Q
     ||||| ||||||||||||||||||  ||||||||||||||||| |||   ||| |||||||||| || |||||||||||||||| ||| ||| ||||||    
T  12239534 gacacattaacctttaggttcgattcgcccccaccagttatgtcaaaccggatgcaaaagggtatgtcggcgaatccccttcaggatacgatgaaatcct 12239633  T
Q  319 tgacgtgacttgtacattcacaccaagcatatcg 352  Q
    |||||||||||| ||||||||||||||| |||||    
T  12239634 tgacgtgacttgcacattcacaccaagcgtatcg 12239667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 37469182 - 37469057
Alignment:
Q  122 tgttagaacatgtgttggttatttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtgg 221  Q
    ||||||||| ||||||||   ||||| || ||||||||||||||||||||||||||||||||||||| || | ||||||||||||  |||||||||||||    
T  37469182 tgttagaacctgtgttgggggtttgcagcaataacttgatcaagaagatgatgaagatgaacatgattaaatgtgcacataaatttcaaagtgtgtgtgg 37469083  T
Q  222 aacaca-taacctttaggttcgattt 246  Q
     ||||| ||||||||||||| |||||    
T  37469082 gacacactaacctttaggtttgattt 37469057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 5437032 - 5436972
Alignment:
Q  152 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 212  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| ||||    
T  5437032 ataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattccaaag 5436972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 145 - 236
Target Start/End: Complemental strand, 1840928 - 1840839
Alignment:
Q  145 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taaccttta 236  Q
    |||||| |||||||||||||| |||||||||   |||||||||||||   || ||||||| |||||||||||||||||| ||| |||||||||    
T  1840928 tgctgcaataacttgatcaagtagatgatga---tgaacatgatgaaaagtggacataaaatctaaagtgtgtgtggaatacactaaccttta 1840839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 24870722 - 24870637
Alignment:
Q  122 tgttagaacatgtgttggttatttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattc 207  Q
    ||||||||| | ||||||   |||||||| |||||||||| |||||||||||||||||  ||||||||||  || |||||||||||    
T  24870722 tgttagaacctatgttgggggtttgctgcaataacttgatgaagaagatgatgaagatagacatgatgaataatacacataaattc 24870637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 286
Target Start/End: Complemental strand, 24871656 - 24871526
Alignment:
Q  155 acttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttccccca 253  Q
    ||||||| ||||||||||||||||| || | ||| |||  |||| ||||||| ||||||||||||  |||||| ||||||||| ||| ||||   ||||     
T  24871656 acttgattaagaagatgatgaagataaatacgataaagagtgcatataaattttaaagtgtgtgt--aacacattaacctttacgtttgattcgtccccg 24871559  T
Q  254 ccagttatgtcaacaatatgtaaaagggtatat 286  Q
    ||||||||| |||  | ||||||||||||||||    
T  24871558 ccagttatgccaatcacatgtaaaagggtatat 24871526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 23121965 - 23122046
Alignment:
Q  36 aacaagatttggctcacataaaaa-tttagtttattagtcagctactcattccaaaggtcacgtctattcatctattaaaga 116  Q
    |||||||||||| |||||| |||| ||||||| |||| | ||||||| |||||||||||||  | || ||||||||||||||    
T  23121965 aacaagatttggttcacatcaaaagtttagttaattatttagctactaattccaaaggtcaaatgtactcatctattaaaga 23122046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 423
Target Start/End: Original strand, 34091475 - 34091586
Alignment:
Q  312 gaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaa 411  Q
    ||||||||||||||||||| ||||||||||||| | |||   | | ||||||| ||||||  || ||||| |||||| | ||| |||| |||||| || |    
T  34091475 gaatccttgacgtgacttgcacattcacaccaatcgtatgaattaatggtagtttacaaagtaaagttctctcaatttctctcatgcattagagaaaaga 34091574  T
Q  412 aagaatgattta 423  Q
    | ||||||||||    
T  34091575 atgaatgattta 34091586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 23757014 - 23757067
Alignment:
Q  154 aacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattc 207  Q
    |||||||  ||||| ||||||||||||||||||||||||  || ||||||||||    
T  23757014 aacttgactaagaaaatgatgaagatgaacatgatgaagagtgaacataaattc 23757067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 122 - 352
Target Start/End: Original strand, 9851256 - 9851487
Alignment:
Q  122 tgttagaacatgtgttggttatttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtgg 221  Q
    ||||||||||||||| ||   | |||||| ||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||| ||||||||    
T  9851256 tgttagaacatgtgtaggaggtctgctgcaataacttgatcaaaaagatgatgaagatgaacatgatgaattgtgcacataaattccaaagcgtgtgtgg 9851355  T
Q  222 aacaca-taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaagggtatatcagcgaatccccttc-aggtacaatggaatcctt 319  Q
     ||||| |||| ||||||||| ||| | ||| |||||||| | ||||   ||| ||||||||||| | ||||||||||||| || ||| ||||||| |||    
T  9851356 gacacactaacatttaggttcaattct-ccctaccagttaagccaaccgaatgcaaaagggtataccggcgaatccccttcaagatacgatggaatactt 9851454  T
Q  320 gacgtgacttgtacattcacaccaagcatatcg 352  Q
     | |||| ||| ||||||||||||||| |||||    
T  9851455 aatgtgatttgcacattcacaccaagcgtatcg 9851487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 152 - 430
Target Start/End: Complemental strand, 29006760 - 29006480
Alignment:
Q  152 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttccc 250  Q
    |||| ||||| || |||||||| |||||||| |||||||||  ||||||||||||  |||| |||||||  ||||| |||| |||||||||||||  |||    
T  29006760 ataatttgataaaaaagatgatcaagatgaatatgatgaagagtgcacataaatttcaaagcgtgtgtgagacacactaacttttaggttcgattcgccc 29006661  T
Q  251 ccaccagttatgtcaacaatatgtaaaagggt-atatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcat 348  Q
    | || |||| | ||||| | ||| |||||||| ||||  |||||||| ||||||  |||||||||||||||||| |||| |  ||||||||||||||| |    
T  29006660 c-actagttttatcaaccagatgcaaaagggttatattggcgaatcctcttcagaatacaatggaatccttgacatgacatacacattcacaccaagcgt 29006562  T
Q  349 atcgttcattggtag-tgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataat 430  Q
    |||| ||| || ||| | |||| || || |||||||||| |   ||||||||||||| | || || |||||||||||||||||    
T  29006561 atcg-tcaatgttagttttacagaataaagttctgtcaacttatctcgtgcactagaaaaaagaatgaatgatttagtataat 29006480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 2022654 - 2022715
Alignment:
Q  145 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaatt 206  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  2022654 tgctgcaataacttgatcaagaagatgatgaagatgaacatgatgaaatgtgcacataaatt 2022715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 267
Target Start/End: Complemental strand, 36203332 - 36203216
Alignment:
Q  152 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttccc 250  Q
    ||||||| |||||||||||||||||||||||||| ||||| | ||||||||||||  |  | ||||||||  |||| ||||||||| ||||||||   ||    
T  36203332 ataacttcatcaagaagatgatgaagatgaacataatgaattgtgcacataaatttcatggcgtgtgtgggccacactaacctttaagttcgattcgtcc 36203233  T
Q  251 ccaccagttatgtcaac 267  Q
    |||||||||||| ||||    
T  36203232 ccaccagttatgccaac 36203216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 43378132 - 43378193
Alignment:
Q  145 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaatt 206  Q
    |||||| ||||||||| || |||||||||||||||||| |||||||||| ||||||||||||    
T  43378132 tgctgcaataacttgaccatgaagatgatgaagatgaatatgatgaagtgtgcacataaatt 43378193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 406
Target Start/End: Original strand, 9080496 - 9080749
Alignment:
Q  154 aacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttccccc 252  Q
    ||||||| |||||||| |||||| ||||||||||| ||    ||||||||||| ||||| |||||| ||||||| ||| ||||| ||||||||  |||||    
T  9080496 aacttgaacaagaagaagatgaaaatgaacatgataaaaagggcacataaattttaaagagtgtgt-gaacacactaagctttaagttcgattcgccccc 9080594  T
Q  253 acc-agttatgtcaacaatatgtaaaagggtatatcagcgaatccccttca-ggtacaatggaatccttgacgtgacttgtacattcacaccaagcatat 350  Q
    ||| | || ||||||  | ||| ||| | ||||| |  |||| |||||||| | |||  |||||| |||||||| ||||| |||||||||  || | |||    
T  9080595 accaatttttgtcaagtagatgcaaatgagtataccgacgaa-ccccttcatgatactttggaattcttgacgtaacttgcacattcacattaaacgtat 9080693  T
Q  351 cgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagaga 406  Q
     | ||| ||||||| ||||||| || ||||| |||||| | |||||| ||||||||    
T  9080694 agatcaatggtagtttacaaaataaagttctctcaattgctctcgtgtactagaga 9080749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 174 - 430
Target Start/End: Complemental strand, 12729644 - 12729386
Alignment:
Q  174 gaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttatgtcaacaatat 272  Q
    ||||||||||||||||||   | ||||| ||||| |||| |||||||| ||||| |||||||||||| |||||  || |||||||||||| ||||   ||    
T  12729644 gaagatgaacatgatgaaaagtacacatgaattccaaagagtgtgtgggacacactaacctttaggtacgattcgcctccaccagttatgccaaccggat 12729545  T
Q  273 gtaaaagggt-atatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaa 370  Q
    | |||||||| ||| | |||| ||||||||||| ||| ||| |||||||||| ||||||| |||||||||||||||||||||  || | ||||| |||      
T  12729544 gcaaaagggttataccggcgattccccttcaggatacgatgaaatccttgacatgacttgcacattcacaccaagcatatcg-acaattgtagtttactg 12729446  T
Q  371 aacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtataat 430  Q
    || || |||||||||||| | ||||||||||||||| || ||||||| ||||||||||||    
T  12729445 aataaagttctgtcaatttctctcgtgcactagagaaaagaaagaattatttagtataat 12729386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 143 - 285
Target Start/End: Original strand, 28695951 - 28696094
Alignment:
Q  143 tttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttc 241  Q
    |||| ||| ||||||||| ||||||||||||||| ||||||||||||||| |||| ||||||||| |||| |||||||| ||||| |||| ||||||||     
T  28695951 tttgttgcaataacttgaccaagaagatgatgaatatgaacatgatgaagaatgcgcataaattccaaagcgtgtgtgggacacactaacttttaggttt 28696050  T
Q  242 gattttcccccaccagttatgtcaacaatatgtaaaagggtata 285  Q
    ||||  ||| |||||||||||||||| | ||| |||||||||||    
T  28696051 gattcgccctcaccagttatgtcaaccagatgcaaaagggtata 28696094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 143 - 369
Target Start/End: Complemental strand, 44729366 - 44729133
Alignment:
Q  143 tttgctgcgataacttgatcaagaagatgatgaagatgaacatga----tgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttag 237  Q
    |||||| | ||||||||||||||||||| ||||| ||||||||||    |||||  ||||||||||||| |||| |||||||| | ||| |||||||||     
T  44729366 tttgctacaataacttgatcaagaagataatgaaaatgaacatgaatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttat 44729267  T
Q  238 gttcgattttcccccaccagttatgtcaacaatatgtaaaagggta-tatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacat 335  Q
    |||| |||  ||||  | ||||||| ||||   ||| || |||||| || | |||||||||||| ||| |||| ||||||||||||||||||||| ||||    
T  44729266 gttcaattcacccctgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacat 44729167  T
Q  336 tcacaccaagcatatcgttcattggtagtgtaca 369  Q
    ||| ||||||| ||||| ||| || |||| ||||    
T  44729166 tcataccaagcgtatcgatcaatgatagtttaca 44729133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 25953661 - 25953607
Alignment:
Q  152 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaatt 206  Q
    ||||||| | ||||||||| ||||||||||| |||||||||| ||||||||||||    
T  25953661 ataacttaaccaagaagataatgaagatgaatatgatgaagtgtgcacataaatt 25953607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 163 - 427
Target Start/End: Original strand, 14218739 - 14219004
Alignment:
Q  163 aagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttat 261  Q
    ||||||||||||||| ||||||||||||    ||||||||||||  |||||||||||   ||| | |||| ||||||||||| ||   ||||||||||||    
T  14218739 aagaagatgatgaaggtgaacatgatgacaagtgcacataaatttaaaagtgtgtgttagacaaactaacttttaggttcga-ttcgtcccaccagttat 14218837  T
Q  262 gtcaacaatatgtaaaagggtatatcagcgaatccccttc-aggtacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattgg 360  Q
    ||||||   ||| ||||| ||||||||  ||||| ||||| || ||| || |||||  |||| |||| |||||||||||||||| | ||||  ||| ||     
T  14218838 gtcaactggatgcaaaagagtatatcaatgaatctccttcaagatactatagaatcactgacttgacatgtacattcacaccaaacgtatccatcaatga 14218937  T
Q  361 tagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtat 427  Q
    |||| ||||||| || ||||| ||||||  |||||||||||||||| || |||||||||||||||||    
T  14218938 tagtttacaaaataaagttctttcaattttcctcgtgcactagagaaaagaaagaatgatttagtat 14219004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 42779890 - 42779938
Alignment:
Q  145 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagt 193  Q
    |||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  42779890 tgctgcaataacttgaccaagaagatgatgaagatgaacataatgaagt 42779938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 716057 - 716123
Alignment:
Q  145 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 212  Q
    |||||| ||||||||| ||||||||||||||| ||||| |||||||||  | ||||||||||||||||    
T  716057 tgctgcaataacttgaccaagaagatgatgaa-atgaatatgatgaagcgtacacataaattctaaag 716123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 417
Target Start/End: Original strand, 34680971 - 34681211
Alignment:
Q  174 gaagatgaacatgatgaagtatgcacataaattctaaag--tgtgtgtggaacacataacctttaggttcgattttcccccaccagttatgtcaacaata 271  Q
    |||||||||||||||||||  ||||||| ||||  ||||  |||||| || |||| |||| |||||||||||||| | |||| |||||||| |||| |      
T  34680971 gaagatgaacatgatgaagactgcacatgaatttaaaagcatgtgtggggtacac-taacttttaggttcgatttgctcccatcagttatgccaactagg 34681069  T
Q  272 tgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaa 370  Q
    || |||||| ||||| |||||||||  |||||| ||| ||| ||| ||     ||||||| ||||||||| ||||| ||||| ||| || |||| |||      
T  34681070 tgcaaaaggatatataagcgaatccttttcaggatactatgaaattct-----tgacttgcacattcacatcaagcgtatcgatcaatgatagtttacgt 34681164  T
Q  371 aacaatgttctgtcaattcccctcgtgcactagagataaaaaagaat 417  Q
    || || ||| |||||||| | ||||| ||| ||||| || |||||||    
T  34681165 aataaagttttgtcaatttctctcgttcaccagagaaaagaaagaat 34681211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 16272137 - 16272185
Alignment:
Q  145 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagt 193  Q
    |||||| |||||||||  ||||||||||| |||||||||||||||||||    
T  16272137 tgctgcaataacttgactaagaagatgataaagatgaacatgatgaagt 16272185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 8367515 - 8367466
Alignment:
Q  143 tttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaag 192  Q
    ||||||||  ||||||||| || | |||||||||||||||||||||||||    
T  8367515 tttgctgcagtaacttgatgaaaacgatgatgaagatgaacatgatgaag 8367466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 169 - 351
Target Start/End: Original strand, 48779718 - 48779902
Alignment:
Q  169 atgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttatgtcaac 267  Q
    ||||| ||||||||||||||||||| |||| |||||||  |||| |||||||| | ||| ||||||||| ||||||||  || |  ||||||||| |||     
T  48779718 atgataaagatgaacatgatgaagtgtgcatataaatttcaaagcgtgtgtgggatacactaacctttatgttcgattcgcctctgccagttatgccaat 48779817  T
Q  268 aatatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatc 351  Q
       ||| ||||||||||||| | |||||||||||||| ||| ||| |||| ||||||||||||| ||||||||||||||||||||    
T  48779818 tggatgcaaaagggtatatcggtgaatccccttcaggatactatgaaatcattgacgtgacttgcacattcacaccaagcatatc 48779902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 3415661 - 3415594
Alignment:
Q  145 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 212  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  3415661 tgctgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcacataaattccaaag 3415594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 163 - 427
Target Start/End: Complemental strand, 20251674 - 20251408
Alignment:
Q  163 aagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttcccccaccagttat 261  Q
    ||||||||||||||||||||||||||||||  | ||||||||||  |||| |||||| || |||| |||  ||||| ||| |||| |||| || ||| ||    
T  20251674 aagaagatgatgaagatgaacatgatgaagagtacacataaatttcaaagcgtgtgtaga-cacactaatatttagattccatttgcccctactagtaat 20251576  T
Q  262 gtcaacaatatgtaaaagggtatatcagcgaatcccc-ttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattg 359  Q
    ||||||   ||| ||| |||||||   | |||||||| |||||| ||  || ||||| |||| ||| |||||||||||||| ||||  ||||| ||| ||    
T  20251575 gtcaaccggatgcaaaggggtatactggtgaatcccccttcaggatatgattgaatcattgatgtgccttgtacattcacatcaagtgtatcgatcaatg 20251476  T
Q  360 gtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagtat 427  Q
     |||| |||| || || |||||||||||| | ||||||||||| ||| || ||| |||||||||||||    
T  20251475 atagtttacataataaagttctgtcaatttctctcgtgcactacagaaaagaaataatgatttagtat 20251408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 3425227 - 3425142
Alignment:
Q  127 gaacatgtgttggttatttgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 212  Q
    |||| ||||||||  || |||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| ||||    
T  3425227 gaacctgtgttggggatctgctgcaataacttgaccaagaagatgatgaagatgaacatgataaagtgtgcacataaattccaaag 3425142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 32429782 - 32429726
Alignment:
Q  156 cttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 212  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  32429782 cttgatcaagatgatgatgaagatgaacatgatgaagtgtgcacataaattctaaag 32429726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 18670543 - 18670597
Alignment:
Q  152 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaatt 206  Q
    ||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||    
T  18670543 ataacttgaccaagaagatgataaagatgaacatgatgaagtgtgcacataaatt 18670597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 430
Target Start/End: Complemental strand, 24391970 - 24391830
Alignment:
Q  289 gcgaatccccttcagg-tacaatggaatccttgacgtgacttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaat 387  Q
    |||||||||||||| | ||||||||||||||||  |||||||| |||| |||||||| | |||||  || || |||| |||| || || ||| |||||||    
T  24391970 gcgaatccccttcaagatacaatggaatccttggtgtgacttgcacat-cacaccaaacgtatcga-caatgatagtttacagaataaagttatgtcaat 24391873  T
Q  388 tcccctcgtgcactagagataaaaaagaatgatttagtataat 430  Q
    | | ||| ||||||||||| || ||||||||||||||||||||    
T  24391872 ttctctcatgcactagagaaaagaaagaatgatttagtataat 24391830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 18736861 - 18736921
Alignment:
Q  152 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 212  Q
    |||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||    
T  18736861 ataacttggtcaagaagatgattaagatgaacttgatgaagtgtgcacataaattccaaag 18736921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 30020359 - 30020297
Alignment:
Q  145 tgctgcgataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattc 207  Q
    |||||| ||||||||| ||||||||||||||||||||  |||||||||| |||| ||||||||    
T  30020359 tgctgcaataacttgaccaagaagatgatgaagatgactatgatgaagtgtgcatataaattc 30020297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 279
Target Start/End: Original strand, 24129170 - 24129298
Alignment:
Q  152 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacaca-taacctttaggttcgattttccc 250  Q
    |||| ||||||||||||  ||||| |||||| ||||||||   ||||||||||||| ||||  |||| || ||||| ||| |||||  || |||| ||||    
T  24129170 ataatttgatcaagaaggcgatgatgatgaatatgatgaaaagtgcacataaattccaaagcatgtgcgggacacattaatctttaactttgattctccc 24129269  T
Q  251 ccaccagttatgtcaacaatatgtaaaag 279  Q
    |||||||||||| |||| | |||||||||    
T  24129270 ccaccagttatgccaaccagatgtaaaag 24129298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 18716188 - 18716248
Alignment:
Q  152 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaag 212  Q
    ||||||||  |||||||||||| ||||||||| ||||||||| || |||||||||| ||||    
T  18716188 ataacttggccaagaagatgattaagatgaacttgatgaagtgtgtacataaattccaaag 18716248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 427
Target Start/End: Original strand, 47077960 - 47078154
Alignment:
Q  228 taacctttaggttcgattttcccccaccagttatgtcaacaatatgtaaaagggtatatcagcgaatccccttcagg-tacaatggaatccttgacgtga 326  Q
    |||||||||| ||| ||| | |||||||| |||||||||    ||| |||||||||| | | | ||||||||| ||| ||| ||||||||||||||||||    
T  47077960 taacctttagattctattcttccccaccaattatgtcaatcggatgcaaaagggtatttga-caaatcccctttaggataccatggaatccttgacgtga 47078058  T
Q  327 cttgtacattcacaccaagcatatcgttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttagta 426  Q
    |||  ||||| ||||||     | || ||| || |||| |||| || || |||||||||||| | ||||| ||||| | | || ||||||||||||||||    
T  47078059 cttacacatttacacca-----aacgatcaatgttagtttacagaataaagttctgtcaatttctctcgtacactacaaaaaagaaagaatgatttagta 47078153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 47071133 - 47071174
Alignment:
Q  152 ataacttgatcaagaagatgatgaagatgaacatgatgaagt 193  Q
    |||||||||  ||||||||||||||||||||||||| |||||    
T  47071133 ataacttgactaagaagatgatgaagatgaacatgacgaagt 47071174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 152 - 424
Target Start/End: Complemental strand, 218013 - 217750
Alignment:
Q  152 ataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattctaaagtgtgtgtggaacacataacctttaggttcgattttcccc 251  Q
    |||||||||  || |||||||||||||||||||| |||||   ||||||||||||| |||||||||| |  ||| |  ||||||||| |||||| |||||    
T  218013 ataacttgacaaaaaagatgatgaagatgaacataatgaatagtgcacataaattccaaagtgtgtggg--acaaactacctttaggatcgattctcccc 217916  T
Q  252 caccagttatgtcaacaatatgtaaaagggtatatcagcgaatccccttcaggtacaatggaatccttgacgtgacttgtacattcacaccaagcatatc 351  Q
    |||||| |||| ||||   ||  ||||||||||| | |||||||         ||| ||| ||||||||| | |||||| ||||||||||||||  ||||    
T  217915 caccagctatgccaacctgatacaaaagggtataccggcgaatcaa-------tacgatgaaatccttgaagagacttgcacattcacaccaagtgtatc 217823  T
Q  352 gttcattggtagtgtacaaaacaatgttctgtcaattcccctcgtgcactagagataaaaaagaatgatttag 424  Q
    | ||| ||||||| ||||||| ||||||||| ||||| | |||||| |||||||| || ||||||| ||||||    
T  217822 gatcaatggtagtttacaaaataatgttctgccaatttctctcgtgaactagagaaaagaaagaattatttag 217750  T

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