View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0305_high_5 (Length: 363)
Name: NF0305_high_5
Description: NF0305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0305_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 39 - 298
Target Start/End: Original strand, 51649951 - 51650210
Alignment:
| Q |
39 |
ataaattcatatgctttgttgattttttcatgannnnnnnaggaagcaatagttttgccaccatgggttgcacttgctgttcgtccaaggccaggtattt |
138 |
Q |
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| T |
51649951 |
ataaattcatatgctttgttgattttttcatgatttttttaggaagcaatagttttgccaccatgggttgcacttgctgttcgtccaaggccaggtattt |
51650050 |
T |
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| Q |
139 |
gggagtatctgagagtgaatgtgcatgctcttgttgttgaaaatttgcaacctgctgagtttctcaaattcaaggaagaacttgttgatggaaggtaatt |
238 |
Q |
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| T |
51650051 |
gggagtatctgagagtaaatgtgcatgctcttgttgttgaaaatttgcaacctgctgagtttctcaaattcaaggaagaacttgttgatggaaggtaatt |
51650150 |
T |
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| Q |
239 |
aatcagtaaaattacctgtgttttggttatatttttacacaaattatgaatgattctgat |
298 |
Q |
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| T |
51650151 |
aatcagtaaaattacttgtgttttggttatatttttacccaaattatgaatggttctgat |
51650210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 86 - 290
Target Start/End: Complemental strand, 55866910 - 55866695
Alignment:
| Q |
86 |
aatagttttgccaccatgggttgcacttgctgttcgtccaaggccaggtatttgggagtatctgagagtgaatgtgcatgctcttgttgttgaaaatttg |
185 |
Q |
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| T |
55866910 |
aatagttttgccaccatgggttgctcttgctgttcgtctaaggccaggtatttgggattatctaagagtgaatgtgcatgctcttgttgttgaaaatttg |
55866811 |
T |
|
| Q |
186 |
caacctgctgagtttctcaaattcaaggaagaacttgttgatggaaggtaattaatcagtaaa-----------attacctgtgttttggttatattttt |
274 |
Q |
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| T |
55866810 |
caaccagctgagtttctcaaattcaaggaagaacttgttgatggaaggtatataatcagtaaattaaggcttttattagttgtgttttggttatattttt |
55866711 |
T |
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| Q |
275 |
acacaaattatgaatg |
290 |
Q |
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| T |
55866710 |
acacaaattatgaatg |
55866695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 86 - 290
Target Start/End: Original strand, 29143862 - 29144077
Alignment:
| Q |
86 |
aatagttttgccaccatgggttgcacttgctgttcgtccaaggccaggtatttgggagtatctgagagtgaatgtgcatgctcttgttgttgaaaatttg |
185 |
Q |
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| T |
29143862 |
aatagttctgccaccatgggttgctcttgctgttcgtctaatgccaggtatttgagagtatctaagagtgaacgtgcatgctcttgttgttgaaaatttg |
29143961 |
T |
|
| Q |
186 |
caacctgctgagtttctcaaattcaaggaagaacttgttgatggaaggtaattaatcagtaaa-----------attacctgtgttttggttatattttt |
274 |
Q |
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| T |
29143962 |
caaccagctgagtttctcaaattcaaggaagaacttgttgatggaagataataaatcagtaaattaaggcttttattagttgtgttttggctatattttt |
29144061 |
T |
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| Q |
275 |
acacaaattatgaatg |
290 |
Q |
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| T |
29144062 |
acacaaattatgaatg |
29144077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 128 - 290
Target Start/End: Complemental strand, 43123932 - 43123760
Alignment:
| Q |
128 |
gccaggtatttgggagtatctgagagtgaatgtgcatgctcttgttgttgaaaatttgcaacctgctgagtttctcaaattcaaggaagaacttgttgat |
227 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
43123932 |
gccaggtatttgggattatctaagagtgaatgtgcatgctcttgttgtcgaaaatttgcaaccagctgagtttctcaaattcaa-gaagaacttgttgat |
43123834 |
T |
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| Q |
228 |
ggaaggtaattaatcagtaaa-----------attacctgtgttttggttatatttttacacaaattatgaatg |
290 |
Q |
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| T |
43123833 |
ggaaggtatataatcagtaaattaaggcttttattagttgtgttttagttatatttttacacaaattatgaatg |
43123760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 19155674 - 19155517
Alignment:
| Q |
79 |
aggaagcaatagttttgccaccatgggttgcacttgctgttcgtccaaggccaggtatttgggagtatctgagagtgaatgtgcatgctcttgttgttga |
178 |
Q |
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| T |
19155674 |
aggaagctgtagtattgccaccatttgttgctcttgctgttcgcccaaggcccggtgtttgggagtatctaagagttgatgtgcacagccttgttgtcga |
19155575 |
T |
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| Q |
179 |
aaatttgcaacctgctgagtttctcaaattcaaggaagaacttgttgatggaaggtaa |
236 |
Q |
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| | | |||| |||| |||||| |||||||| ||||||||||| ||||||||| |
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| T |
19155574 |
tgaacttcgtgctgccgagtatctcaagttcaaggaggaacttgttgaaggaaggtaa |
19155517 |
T |
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