View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0305_low_11 (Length: 293)

Name: NF0305_low_11
Description: NF0305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0305_low_11
NF0305_low_11
[»] chr5 (16 HSPs)
chr5 (58-293)||(28031126-28031360)
chr5 (103-262)||(36289978-36290137)
chr5 (158-262)||(42858106-42858210)
chr5 (156-284)||(31906255-31906383)
chr5 (156-259)||(6951291-6951394)
chr5 (156-262)||(18851065-18851171)
chr5 (158-259)||(32980541-32980642)
chr5 (158-262)||(38845441-38845546)
chr5 (201-249)||(10898762-10898810)
chr5 (155-251)||(9818729-9818826)
chr5 (132-251)||(11648054-11648171)
chr5 (158-262)||(39097244-39097348)
chr5 (149-252)||(28110431-28110534)
chr5 (152-258)||(3993802-3993908)
chr5 (230-267)||(11577599-11577636)
chr5 (190-254)||(35073429-35073493)
[»] chr8 (22 HSPs)
chr8 (193-284)||(32927925-32928016)
chr8 (160-262)||(16972047-16972149)
chr8 (193-262)||(26100129-26100198)
chr8 (158-246)||(13384653-13384741)
chr8 (156-254)||(10982277-10982375)
chr8 (202-268)||(32736504-32736570)
chr8 (193-262)||(35495023-35495092)
chr8 (202-262)||(4662886-4662946)
chr8 (193-261)||(35495293-35495361)
chr8 (202-261)||(5859047-5859106)
chr8 (158-265)||(40769347-40769454)
chr8 (158-250)||(15677810-15677903)
chr8 (217-262)||(32101130-32101175)
chr8 (201-246)||(32681303-32681348)
chr8 (193-262)||(37684438-37684507)
chr8 (193-262)||(38335844-38335913)
chr8 (158-255)||(38868496-38868593)
chr8 (205-261)||(2924822-2924878)
chr8 (199-259)||(38868782-38868842)
chr8 (202-261)||(32994226-32994285)
chr8 (230-270)||(3279040-3279080)
chr8 (230-262)||(9461521-9461553)
[»] chr6 (21 HSPs)
chr6 (153-262)||(434220-434329)
chr6 (158-262)||(3482044-3482148)
chr6 (158-261)||(957607-957710)
chr6 (199-262)||(25195349-25195412)
chr6 (193-255)||(17225885-17225947)
chr6 (193-261)||(4910941-4911009)
chr6 (193-261)||(31305831-31305899)
chr6 (202-281)||(8860546-8860625)
chr6 (193-261)||(34620919-34620987)
chr6 (193-261)||(34748356-34748424)
chr6 (202-261)||(882728-882787)
chr6 (193-260)||(1485131-1485198)
chr6 (215-262)||(3289800-3289846)
chr6 (215-262)||(8856362-8856409)
chr6 (193-262)||(25195883-25195950)
chr6 (171-268)||(8854931-8855027)
chr6 (193-250)||(9505803-9505860)
chr6 (161-246)||(12126163-12126248)
chr6 (221-262)||(16540168-16540209)
chr6 (193-256)||(947600-947661)
chr6 (158-254)||(993956-994052)
[»] chr4 (19 HSPs)
chr4 (158-262)||(32818353-32818457)
chr4 (156-262)||(35065059-35065165)
chr4 (202-262)||(21691195-21691255)
chr4 (215-258)||(16552010-16552053)
chr4 (158-261)||(47144213-47144315)
chr4 (157-261)||(8604606-8604710)
chr4 (123-259)||(53913563-53913699)
chr4 (158-259)||(20718615-20718716)
chr4 (155-255)||(25927303-25927401)
chr4 (158-250)||(39386631-39386723)
chr4 (202-262)||(45694656-45694716)
chr4 (224-268)||(53713538-53713582)
chr4 (193-228)||(30357545-30357580)
chr4 (218-261)||(55927754-55927797)
chr4 (193-259)||(4243420-4243486)
chr4 (193-259)||(10185227-10185293)
chr4 (200-261)||(33347154-33347215)
chr4 (205-261)||(46344818-46344872)
chr4 (230-270)||(52342026-52342066)
[»] chr1 (25 HSPs)
chr1 (195-267)||(1514378-1514450)
chr1 (126-262)||(28083871-28084007)
chr1 (193-262)||(7524146-7524215)
chr1 (156-261)||(3016158-3016263)
chr1 (193-257)||(11049283-11049347)
chr1 (215-262)||(30557557-30557604)
chr1 (158-259)||(3416078-3416179)
chr1 (193-260)||(213522-213589)
chr1 (194-243)||(7790644-7790693)
chr1 (193-262)||(10324921-10324990)
chr1 (202-251)||(30850393-30850442)
chr1 (170-262)||(32370014-32370106)
chr1 (199-259)||(34721826-34721886)
chr1 (202-250)||(47321902-47321950)
chr1 (196-262)||(2099670-2099737)
chr1 (197-252)||(14334056-14334111)
chr1 (202-261)||(38797614-38797672)
chr1 (151-213)||(6590008-6590070)
chr1 (193-259)||(11817303-11817368)
chr1 (221-259)||(47053465-47053503)
chr1 (203-261)||(52263631-52263689)
chr1 (160-254)||(52339719-52339813)
chr1 (209-254)||(35961417-35961462)
chr1 (205-261)||(1233350-1233406)
chr1 (193-261)||(34915099-34915167)
[»] chr7 (9 HSPs)
chr7 (203-284)||(45557408-45557489)
chr7 (202-284)||(38123627-38123709)
chr7 (193-259)||(40491611-40491677)
chr7 (202-262)||(25156242-25156302)
chr7 (134-244)||(32938687-32938797)
chr7 (202-262)||(42816451-42816511)
chr7 (230-261)||(40561742-40561773)
chr7 (204-262)||(17111889-17111947)
chr7 (158-262)||(42344673-42344777)
[»] chr2 (19 HSPs)
chr2 (158-262)||(33019139-33019243)
chr2 (216-262)||(16518834-16518880)
chr2 (199-261)||(8800682-8800744)
chr2 (202-259)||(42982586-42982643)
chr2 (193-262)||(33502270-33502336)
chr2 (170-260)||(10644613-10644703)
chr2 (208-261)||(1976848-1976901)
chr2 (193-254)||(11504053-11504113)
chr2 (193-262)||(32596024-32596093)
chr2 (202-262)||(13912829-13912889)
chr2 (193-248)||(33961978-33962033)
chr2 (230-285)||(40401603-40401658)
chr2 (155-262)||(42740972-42741078)
chr2 (156-227)||(45066438-45066509)
chr2 (220-261)||(15220845-15220886)
chr2 (193-262)||(22536031-22536100)
chr2 (230-262)||(680273-680305)
chr2 (193-261)||(4894141-4894209)
chr2 (193-261)||(44439287-44439355)
[»] chr3 (15 HSPs)
chr3 (193-262)||(31708222-31708291)
chr3 (158-262)||(25359557-25359661)
chr3 (193-261)||(41596133-41596201)
chr3 (193-252)||(4526165-4526224)
chr3 (193-262)||(33791988-33792058)
chr3 (132-246)||(52364023-52364137)
chr3 (155-255)||(42913049-42913149)
chr3 (219-270)||(46551243-46551294)
chr3 (170-252)||(47356238-47356320)
chr3 (193-261)||(5406939-5407005)
chr3 (202-259)||(35253453-35253510)
chr3 (202-254)||(29305928-29305980)
chr3 (202-262)||(31013060-31013120)
chr3 (193-249)||(32523336-32523392)
chr3 (202-270)||(34331686-34331754)
[»] scaffold0361 (1 HSPs)
scaffold0361 (190-261)||(14098-14169)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 58 - 293
Target Start/End: Complemental strand, 28031360 - 28031126
Alignment:
Q  58 catcaactaaattttaaagctcctatatgtttggttcttgagaccaaaattgattctaatgtgtatgtttgttttcgagtagaattaataatgtattcat 157  Q
    |||||||||| ||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28031360 catcaactaatttttaaagctcctgtatatttggttctagagaccaaaattgattctaatgtgtatgtttgttttcgagtagaattaattatgtattcat 28031261  T
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcca 257  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| ||    
T  28031260 aattgattctatttgaagttaaaatttatattttttgattatataattgactttta-acacaaatttatagatcaacttacttttacatgaatgtattca 28031162  T
Q  258 aacactaattactctgcctttaactcataattagtt 293  Q
    ||||||||||||||||||||||||||||||||||||    
T  28031161 aacactaattactctgcctttaactcataattagtt 28031126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 103 - 262
Target Start/End: Original strand, 36289978 - 36290137
Alignment:
Q  103 aaaattgattctaatgtgtatgtttgttttcgagtagaattaataatgtattcataattgattttatttgaagttaaaatttatactttatgattatata 202  Q
    |||||||||||| || | | || ||||| |||||||||||||||  || |||||||||||||| || |||||||||| |||| |   || |||||  |||    
T  36289978 aaaattgattctgatatatttggttgttgtcgagtagaattaatgttgcattcataattgattatacttgaagttaagatttgttagttttgattccata 36290077  T
Q  203 attgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
     |||||||| ||||||| |||||||| |||||||| ||||||| ||||||||||| ||||    
T  36290078 tttgattttcagacacatatttatagttcaactcagttttacacgaatgtatccatacac 36290137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 42858106 - 42858210
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcca 257  Q
    ||||||||||| |||||||||  ||||  |  || | ||| ||||||||||||| | |||||||||||||| ||||||||||||||||||||| ||| ||    
T  42858106 aattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagttcaactcacttttacatgaatttattca 42858205  T
Q  258 aacac 262  Q
    |||||    
T  42858206 aacac 42858210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 284
Target Start/End: Original strand, 31906255 - 31906383
Alignment:
Q  156 ataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatc 255  Q
    ||||||||||||| |||||| ||  |||| ||  || |||||||||||||||| |||  | | |||||||||| |||||||||||||||||||||  |||    
T  31906255 ataattgattttacttgaagctatgatttgtaacttttgattatataattgatattttcatataaatttatagttcaactcacttttacatgaattcatc 31906354  T
Q  256 caaacactaattactctgcctttaactca 284  Q
    | || || ||||| | | |||||||||||    
T  31906355 cgaaaacaaattattttacctttaactca 31906383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 6951394 - 6951291
Alignment:
Q  156 ataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatc 255  Q
    |||||||||| || |||||||||  |||| ||  || ||||| |||||||||||| || ||| |||||||||  |||| |||||||||||||||| ||||    
T  6951394 ataattgattctacttgaagttaggatttgtagcttttgattctataattgatttgtacacataaatttataattcaattcacttttacatgaatttatc 6951295  T
Q  256 caaa 259  Q
    ||||    
T  6951294 caaa 6951291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 18851171 - 18851065
Alignment:
Q  156 ataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatc 255  Q
    |||||||||| || |||||| ||  |||| ||  || |||||||| |||||||||| | ||||| |||||||| | ||||||||||||||||||  ||||    
T  18851171 ataattgattctacttgaagctatgatttgtagcttttgattatagaattgattttcacacacatatttatagttaaactcacttttacatgaagttatc 18851072  T
Q  256 caaacac 262  Q
    |||||||    
T  18851071 caaacac 18851065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 259
Target Start/End: Original strand, 32980541 - 32980642
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcca 257  Q
    ||||||||||| |||||||||| |||||||  || ||||| || || ||||||||| |  ||||||||| | || | | |||||||||||||||||||||    
T  32980541 aattgattttacttgaagttaagatttatatcttttgattctacaaatgatttttacattcaaatttattgctcgagttacttttacatgaatgtatcca 32980640  T
Q  258 aa 259  Q
    ||    
T  32980641 aa 32980642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 38845441 - 38845546
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcac-ttttacatgaatgtatcc 256  Q
    |||||||| || |||||| ||| |||| || ||| ||||| || |||||||||| | |||||||| ||||| | ||||||| |||||||||||| |||||    
T  38845441 aattgattctacttgaagctaagatttgtagtttttgattctagaattgattttcacacacaaatatatagttaaactcactttttacatgaatatatcc 38845540  T
Q  257 aaacac 262  Q
    ||||||    
T  38845541 aaacac 38845546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 10898762 - 10898810
Alignment:
Q  201 taattgatttttagacacaaatttatagatcaactcacttttacatgaa 249  Q
    ||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  10898762 taattgatttttacacacaaatttattgttcaactcacttttacatgaa 10898810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 9818729 - 9818826
Alignment:
Q  155 cataattgattttatttgaagttaaaatttatactttatgattatataattgattttt-agacacaaatttatagatcaactcacttttacatgaatg 251  Q
    ||||||||||| || |||||| ||  |||| ||  || ||||| || ||||||||||| | |||||||||||||| |||||||||||||| |||||||    
T  9818729 cataattgattctacttgaagctatgatttgtagcttttgattctagaattgattttttaaacacaaatttatagttcaactcacttttatatgaatg 9818826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 251
Target Start/End: Original strand, 11648054 - 11648171
Alignment:
Q  132 tcgagtagaattaataatgtattcataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatc 231  Q
    |||||||||||| || ||| ||| | |||||||| || |||||| ||| |||| ||| || |||||||| |||||||||| | |||| ||  ||||  ||    
T  11648054 tcgagtagaatttattatgcatttaaaattgattctacttgaagctaagatttgtacattttgattataaaattgattttcacacacgaa--tataattc 11648151  T
Q  232 aactcacttttacatgaatg 251  Q
    |||||| |||||||||||||    
T  11648152 aactcaattttacatgaatg 11648171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 39097244 - 39097348
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcca 257  Q
    |||||||| || |||||| |||||||| ||  || | ||||||||||||||||| | ||| ||||||| || |||||  |||||||||| |||| ||| |    
T  39097244 aattgattctacttgaagctaaaatttgtaacttttaattatataattgattttcacacataaatttaaagttcaacctacttttacataaatgaatcaa 39097343  T
Q  258 aacac 262  Q
    |||||    
T  39097344 aacac 39097348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 28110534 - 28110431
Alignment:
Q  149 tgtattcataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatga 248  Q
    |||||| | |||||||||||||| |||||   |||| ||  || ||||| || |||||||||| | |||||||||||||| | |||||||||||| || |    
T  28110534 tgtatttaaaattgattttattttaagttgggatttgtaacttttgattttagaattgattttcacacacaaatttatagttgaactcacttttatataa 28110435  T
Q  249 atgt 252  Q
    ||||    
T  28110434 atgt 28110431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 258
Target Start/End: Original strand, 3993802 - 3993908
Alignment:
Q  152 attcataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatg 251  Q
    |||||| ||||||| ||||| || ||| ||| | || ||| ||||| || | || ||||||| |||||||||||||| || | ||| |||||||||||||    
T  3993802 attcatgattgattatatttaaaattagaatctgtagtttctgattctaaattttatttttacacacaaatttatagttcgattcatttttacatgaatg 3993901  T
Q  252 tatccaa 258  Q
    | |||||    
T  3993902 tttccaa 3993908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 11577636 - 11577599
Alignment:
Q  230 tcaactcacttttacatgaatgtatccaaacactaatt 267  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  11577636 tcaactcacttttacatgaatgcatccaaacacaaatt 11577599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 35073493 - 35073429
Alignment:
Q  190 ttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtat 254  Q
    ||||||||||| |||||||||| | || |||||||| || | |||||||||||| || |||||||    
T  35073493 ttatgattatagaattgattttgacactcaaatttaaagtttaactcacttttatataaatgtat 35073429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 32927925 - 32928016
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacactaattactctgcctttaactca 284  Q
    |||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||    
T  32927925 tgattatagaattcatttttacacacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactca 32928016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 262
Target Start/End: Complemental strand, 16972149 - 16972047
Alignment:
Q  160 ttgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaa 259  Q
    |||||| ||||||||| || ||||| || ||| | ||| || |||||||||||| |||||||||||| | |||| |||||||||||||||||||| ||||    
T  16972149 ttgattgtatttgaagctagaatttgtagtttttaattttagaattgatttttaaacacaaatttattgttcaaatcacttttacatgaatgtattcaaa 16972050  T
Q  260 cac 262  Q
    |||    
T  16972049 cac 16972047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 26100198 - 26100129
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    ||||| ||||||||||||||| |||||||||||| | ||||||||||||||||| |||| ||||||||||    
T  26100198 tgattctataattgatttttacacacaaatttatggttcaactcacttttacataaatgcatccaaacac 26100129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 13384741 - 13384653
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacat 246  Q
    |||||||| ||||||||| |||||||| ||  || ||||| || |||||||||| | |||||||||||||| |||||||||||||||||    
T  13384741 aattgattctatttgaagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcacttttacat 13384653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 10982277 - 10982375
Alignment:
Q  156 ataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtat 254  Q
    |||||||||| || ||||||||| |||||||| |||||||||||| |||||||||| | | | | | |||||| | || ||||||||| ||||||||||    
T  10982277 ataattgattctacttgaagttataatttataatttatgattataaaattgattttcacatatagacttatagtttaattcacttttatatgaatgtat 10982375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 32736504 - 32736570
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacactaatta 268  Q
    |||| ||||||| |||||||||||||| |||| |||||||||||||||||||| |||| || |||||    
T  32736504 aattaatttttacacacaaatttatagttcaattcacttttacatgaatgtattcaaatacaaatta 32736570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 35495023 - 35495092
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    ||||| || ||||| |||||| |||||||| ||||| |||||| |||||||||||||| |||||||||||    
T  35495023 tgattctagaattgttttttacacacaaatctatagttcaacttacttttacatgaatatatccaaacac 35495092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 4662946 - 4662886
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    |||||||||||| |||||||| ||||| ||||||| ||||| | |||||||||||||||||    
T  4662946 aattgatttttacacacaaatgtatagttcaactcgcttttccgtgaatgtatccaaacac 4662886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 35495293 - 35495361
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    ||||| ||||||||||||||| || ||||||||| | |||| |||||||||  ||||||||||||||||    
T  35495293 tgattctataattgatttttatactcaaatttattgttcaaatcacttttatttgaatgtatccaaaca 35495361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 5859106 - 5859047
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    |||||||||||| |||||| ||||| | |||||||||||||||||||||| || ||||||    
T  5859106 aattgatttttacacacaattttatggttcaactcacttttacatgaatgcattcaaaca 5859047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 265
Target Start/End: Complemental strand, 40769454 - 40769347
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcca 257  Q
    |||||||| || ||| ||| |||||| ||| ||| | ||| ||||||||||||| | |||||||||||||  |||| ||| |||||||  ||||||| ||    
T  40769454 aattgattctacttggagtcaaaattaatatttttttattctataattgattttcacacacaaatttataattcaattcaattttacacaaatgtattca 40769355  T
Q  258 aacactaa 265  Q
    ||||||||    
T  40769354 aacactaa 40769347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 250
Target Start/End: Complemental strand, 15677903 - 15677810
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgattttt-agacacaaatttatagatcaactcacttttacatgaat 250  Q
    |||||||| || |||||| ||  |||||||  || |||||||| ||||||||||| | |||||||||||||| |||||||| | ||||||||||    
T  15677903 aattgattctacttgaagctaggatttatagcttttgattatagaattgattttttacacacaaatttatagttcaactcattgttacatgaat 15677810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 32101130 - 32101175
Alignment:
Q  217 acaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    |||||||||||| ||||||||||||||||| |||||||||| ||||    
T  32101130 acaaatttatagttcaactcacttttacataaatgtatccacacac 32101175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 32681348 - 32681303
Alignment:
Q  201 taattgatttttagacacaaatttatagatcaactcacttttacat 246  Q
    ||||||||||||| |||||||||||||  |||||||||||||||||    
T  32681348 taattgatttttaaacacaaatttataattcaactcacttttacat 32681303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 37684438 - 37684507
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    ||||| || |||||||||| |  || |||||||||  ||||||||||||||||| |||||||||||||||    
T  37684438 tgattctaaaattgattttaatgcaaaaatttataattcaactcacttttacataaatgtatccaaacac 37684507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 38335913 - 38335844
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    ||||| || ||||||||||||  ||||||||||||    ||||||||||||||||||||||||| |||||    
T  38335913 tgattttagaattgatttttacgcacaaatttatattctaactcacttttacatgaatgtatccgaacac 38335844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 38868496 - 38868593
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatc 255  Q
    |||||||| || |||||| ||| |||| ||  || || || ||||||||||||| | |||||||||||||| |||||||| |||||||  ||||||||    
T  38868496 aattgattctacttgaagctaagatttgtagcttttggttctataattgattttcacacacaaatttatagttcaactcaattttacaataatgtatc 38868593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 2924822 - 2924878
Alignment:
Q  205 tgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    ||||||||| || ||||| ||| |||||||||||||||||||  |||||||||||||    
T  2924822 tgatttttacactcaaatatattgatcaactcacttttacatatatgtatccaaaca 2924878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 38868782 - 38868842
Alignment:
Q  199 tataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaa 259  Q
    ||||||||||||| |  ||||||||||||| || ||||||||||||||||| |||| ||||    
T  38868782 tataattgattttcacgcacaaatttatagttctactcacttttacatgaacgtattcaaa 38868842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 32994285 - 32994226
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    |||||||||||| ||||||||||||||  ||| | |||||||||||||||  ||||||||    
T  32994285 aattgatttttatacacaaatttatagtgcaaatgacttttacatgaatgagtccaaaca 32994226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 3279040 - 3279080
Alignment:
Q  230 tcaactcacttttacatgaatgtatccaaacactaattact 270  Q
    ||||||||||||||||||||| |||||||| || |||||||    
T  3279040 tcaactcacttttacatgaatatatccaaaaacaaattact 3279080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 9461553 - 9461521
Alignment:
Q  230 tcaactcacttttacatgaatgtatccaaacac 262  Q
    |||||||||||||| ||||||||||||||||||    
T  9461553 tcaactcacttttatatgaatgtatccaaacac 9461521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 434329 - 434220
Alignment:
Q  153 ttcataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgt 252  Q
    ||||||||||||| ||||||||||||||||| |||  || ||||| || |||||||||||| ||| ||||||| |  |||||||||||||||| |||| |    
T  434329 ttcataattgattatatttgaagttaaaattaatagcttttgattttagaattgatttttatacataaatttaaatttcaactcacttttacacgaatat 434230  T
Q  253 atccaaacac 262  Q
    ||||||||||    
T  434229 atccaaacac 434220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 3482044 - 3482148
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcca 257  Q
    |||||||| || |||||||||| |||| ||   | ||||| || |||||||||| | |||||| ||||||| |||||| |||||||||||||||||| ||    
T  3482044 aattgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacacacaagtttatagttcaacttacttttacatgaatgtattca 3482143  T
Q  258 aacac 262  Q
    |||||    
T  3482144 aacac 3482148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 957710 - 957607
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcca 257  Q
    ||||||||||| ||| || ||| ||||||| ||| |||||  ||||| |||||||| ||||||| ||| |  | |||||| |||||||||||||||||||    
T  957710 aattgattttacttgtagctaagatttatagtttttgattccataatcgatttttacacacaaacttaaaatttaactcatttttacatgaatgtatcca 957611  T
Q  258 aaca 261  Q
    ||||    
T  957610 aaca 957607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 25195412 - 25195349
Alignment:
Q  199 tataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    ||||||||||||| | ||||||||||| |  ||||||||||||||||| |||||||||||||||    
T  25195412 tataattgattttcatacacaaatttacaattcaactcacttttacataaatgtatccaaacac 25195349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 17225885 - 17225947
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatc 255  Q
    ||||| || |||||||||||| | |||||||||||| |||||||| |||||||||||||||||    
T  17225885 tgattctagaattgatttttacatacaaatttatagttcaactcagttttacatgaatgtatc 17225947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 4910941 - 4911009
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    ||||| || |||||||||| | | |||||||||||| || |||||||||||||| ||||||||||||||    
T  4910941 tgattctagaattgattttcacatacaaatttatagttcgactcacttttacataaatgtatccaaaca 4911009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 31305899 - 31305831
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    ||||| || ||||||||| || || ||||||||| ||||||||||||||||||| ||| ||||||||||    
T  31305899 tgattctagaattgatttatacactcaaatttattgatcaactcacttttacattaatatatccaaaca 31305831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 8860546 - 8860625
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacactaattactctgcctttaac 281  Q
    |||||||||| | ||| |||||||| | ||||||||||||| |||||||||||| |||||| ||||| | | ||||||||    
T  8860546 aattgattttgacacataaatttatggttcaactcacttttgcatgaatgtatctaaacacaaattattttacctttaac 8860625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 34620919 - 34620987
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    ||||| || |||||||||||| ||  ||||||||   ||||||||||||||||| ||||||||||||||    
T  34620919 tgattctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaaca 34620987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 34748356 - 34748424
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    ||||| || |||||||||||| ||  ||||||||   ||||||||||||||||| ||||||||||||||    
T  34748356 tgattctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaaca 34748424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 882728 - 882787
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    |||||||||||| |  ||||||||| | | ||||||||||| ||||||||||||||||||    
T  882728 aattgatttttacattcaaatttattgtttaactcacttttgcatgaatgtatccaaaca 882787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 1485198 - 1485131
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaac 260  Q
    ||||| || |||||||||| | || ||||||||| | ||||||||||||||||| | |||||||||||    
T  1485198 tgattctagaattgattttaacactcaaatttattgttcaactcacttttacataagtgtatccaaac 1485131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 3289800 - 3289846
Alignment:
Q  215 acacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||    
T  3289800 acacaaatttataattcaactcacttttacat-aatgtatccaaacac 3289846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 8856362 - 8856409
Alignment:
Q  215 acacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    ||||||||||||   |||||||||||| ||||||||||||||||||||    
T  8856362 acacaaatttatgtttcaactcactttcacatgaatgtatccaaacac 8856409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 25195883 - 25195950
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    ||||| || |||||| || || |||||||||||||| |||||||||  |||||| |||||||||||||||    
T  25195883 tgattctagaattgaattgtacacacaaatttatagttcaactcac--ttacataaatgtatccaaacac 25195950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 268
Target Start/End: Original strand, 8854931 - 8855027
Alignment:
Q  171 tgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacactaatta 268  Q
    ||||| || ||||| || ||| ||| |||| |||||||||||| | |||||||||| | | |||| |||||||||| ||||||| ||||||| |||||    
T  8854931 tgaagctacaatttgtagtttttgactatagaattgatttttacatacaaatttatggttgaacttacttttacattaatgtat-caaacacaaatta 8855027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 9505803 - 9505860
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaat 250  Q
    ||||| ||| ||||||||||| || ||||||||| | ||||| |||||||||||||||    
T  9505803 tgattctatgattgatttttaaactcaaatttattgttcaacacacttttacatgaat 9505860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 12126163 - 12126248
Alignment:
Q  161 tgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacat 246  Q
    ||||||||||||||| | ||||||  |  || ||||| || |||||||||| | ||| ||||||| ||||||||| ||||||||||    
T  12126163 tgattttatttgaagctgaaatttgcagcttttgattttagaattgattttcatacaaaaatttacagatcaactaacttttacat 12126248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 16540168 - 16540209
Alignment:
Q  221 atttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    |||||||| | ||||||||||||||| |||||||||||||||    
T  16540168 atttatagttaaactcacttttacatcaatgtatccaaacac 16540209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 947600 - 947661
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcc 256  Q
    ||||| || |||||||| ||| ||||||  |||||  |||||||||||||||||||||||||||    
T  947600 tgattctagaattgattcttaaacacaa--ttataattcaactcacttttacatgaatgtatcc 947661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 993956 - 994052
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtat 254  Q
    |||| |||||| |||||||||  |||| ||  || |||| |||||||||||||||| ||| | | |||| | |||| ||||||||| ||||||||||    
T  993956 aattaattttacttgaagttatgatttttaacttttgatcatataattgatttttaaacatatagttattgttcaattcacttttatatgaatgtat 994052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 32818457 - 32818353
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcca 257  Q
    |||||||| ||||||||| || ||||| ||  || ||||| || |||||||||||  |||||||||||||| |||||| |||||||||||||||||||||    
T  32818457 aattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaactaacttttacatgaatgtatcca 32818358  T
Q  258 aacac 262  Q
    |||||    
T  32818357 aacac 32818353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 35065059 - 35065165
Alignment:
Q  156 ataattgattttatttgaagttaaaatttat-actttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtat 254  Q
    ||||||||||||| |||||| ||  |||| | ||||| ||||| || |||||||||||| |||||||||||||  || ||||||||||||||||||||||    
T  35065059 ataattgattttacttgaagctagtatttgtgacttt-tgattctagaattgatttttacacacaaatttatatctccactcacttttacatgaatgtat 35065157  T
Q  255 ccaaacac 262  Q
    ||||||||    
T  35065158 ccaaacac 35065165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 21691255 - 21691195
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    |||||||||| | |||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  21691255 aattgattttcacacacaaatttatagttcaacacacttttacatgaatatatccaaacac 21691195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 16552010 - 16552053
Alignment:
Q  215 acacaaatttatagatcaactcacttttacatgaatgtatccaa 258  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  16552010 acacaaatttatagttcaactcacttttacatgaatgtatccaa 16552053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 261
Target Start/End: Original strand, 47144213 - 47144315
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcca 257  Q
    ||||||||  |||||||||||||| || || ||||||||| |||||||||||||||  |  |||||||| |  ||||| ||||||| |||||||||||||    
T  47144213 aattgattcaatttgaagttaaaaatt-tagtttatgattctataattgatttttacgctaaaatttattgtccaactaacttttagatgaatgtatcca 47144311  T
Q  258 aaca 261  Q
    ||||    
T  47144312 aaca 47144315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 261
Target Start/End: Complemental strand, 8604710 - 8604606
Alignment:
Q  157 taattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcc 256  Q
    ||||||||| || |||||| ||| |||| ||  ||  |||| || |||||||||| | |||||||||||||| | ||  |||||||||||||||||||||    
T  8604710 taattgattctacttgaagctaagatttgtagctttcgattctagaattgattttcacacacaaatttatagttgaatgcacttttacatgaatgtatcc 8604611  T
Q  257 aaaca 261  Q
    |||||    
T  8604610 aaaca 8604606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 259
Target Start/End: Complemental strand, 53913699 - 53913563
Alignment:
Q  123 tgtttgttttcgagtagaattaataatgtattcataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaat 222  Q
    |||||||| |||||||||||| ||  ||  || ||||||||||||| || ||| ||  ||||||  ||| ||||| ||||||||||||| | ||| ||||    
T  53913699 tgtttgttgtcgagtagaattgattttgcctttataattgattttacttaaagatatgatttatcatttgtgattctataattgattttcacacataaat 53913600  T
Q  223 ttatagatcaactcacttttacatgaatgtatccaaa 259  Q
    |||||| | |||||||| | |||| ||||||| ||||    
T  53913599 ttatagttaaactcactataacataaatgtatgcaaa 53913563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 259
Target Start/End: Original strand, 20718615 - 20718716
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcca 257  Q
    ||||||||||||||||| |||  |||| ||  || | |||||| |||||||||||  ||||||| |||||| |||| | ||||||| || ||||||||||    
T  20718615 aattgattttatttgaatttatgatttgtagcttttaattataaaattgatttttctacacaaaattatagttcaagttacttttaaataaatgtatcca 20718714  T
Q  258 aa 259  Q
    ||    
T  20718715 aa 20718716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 25927303 - 25927401
Alignment:
Q  155 cataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtat 254  Q
    ||||||||||| |||||| |||||| |||| ||  ||||||||  | |||||||||||  ||| |||||||| | |||| |||||||||| |||||||||    
T  25927303 cataattgattctatttggagttaagatttgtagcttatgatttcagaattgattttt--acataaatttatggctcaattcacttttacgtgaatgtat 25927400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 39386631 - 39386723
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaat 250  Q
    |||||||| || || ||| |||||||||||   | | ||| ||||||||||||| | ||||| ||||| || |||||||||||||||||||||    
T  39386631 aattgattctacttaaagctaaaatttataacatttaattctataattgattttcacacacatatttaaagttcaactcacttttacatgaat 39386723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 45694656 - 45694716
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    |||||||| | | ||||| |||||||| | |||||| ||||||||||||||||||||||||    
T  45694656 aattgattctaacacacacatttatagttgaactcatttttacatgaatgtatccaaacac 45694716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 53713582 - 53713538
Alignment:
Q  224 tatagatcaactcacttttacatgaatgtatccaaacactaatta 268  Q
    ||||| ||||||||||||||||||||||| ||||||||| |||||    
T  53713582 tatagttcaactcacttttacatgaatgtgtccaaacacaaatta 53713538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 30357545 - 30357580
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatag 228  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30357545 tgattatataattgatttttacacacaaatttatag 30357580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 55927797 - 55927754
Alignment:
Q  218 caaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    ||||||||| | |||| |||||||||||||||||||||||||||    
T  55927797 caaatttattgttcaagtcacttttacatgaatgtatccaaaca 55927754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 4243420 - 4243486
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaa 259  Q
    ||||| || |||||||||||| || ||||||||| | || |||||||||||||| ||||| ||||||    
T  4243420 tgattctagaattgatttttacactcaaatttattgttctactcacttttacatcaatgtctccaaa 4243486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 10185227 - 10185293
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaa 259  Q
    ||||| || ||||||| |||| || ||||||||| | | ||||||||||||||| ||||||||||||    
T  10185227 tgattctaaaattgatctttacactcaaatttattgtttaactcacttttacattaatgtatccaaa 10185293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 33347215 - 33347154
Alignment:
Q  200 ataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    |||||| ||||||  |||||||| ||||| |||| |||||||||||||| ||||| ||||||    
T  33347215 ataattaatttttgcacacaaatatatagttcaattcacttttacatgattgtattcaaaca 33347154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 46344872 - 46344818
Alignment:
Q  205 tgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    ||||||||| ||||||||||| || || |||||||||||||| ||||||||||||||    
T  46344872 tgattttta-acacaaatttaaagttcgactcacttttacat-aatgtatccaaaca 46344818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 52342026 - 52342066
Alignment:
Q  230 tcaactcacttttacatgaatgtatccaaacactaattact 270  Q
    |||||||| |||||||||||||||| ||||||| |||||||    
T  52342026 tcaactcatttttacatgaatgtattcaaacacaaattact 52342066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 1514378 - 1514450
Alignment:
Q  195 attatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacactaatt 267  Q
    ||||||||||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||| ||||    
T  1514378 attatataattgatttttacacacaaatttattgttcaactcatttttacatgaatgtatccaaacacaaatt 1514450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 262
Target Start/End: Complemental strand, 28084007 - 28083871
Alignment:
Q  126 ttgttttcgagtagaattaataatgtattcataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaattta 225  Q
    |||||||||||||||||| ||  ||| ||| ||||||||| || |||||| || ||||| ||  || ||||| ||||||| ||||||| ||||||||||     
T  28084007 ttgttttcgagtagaattgattttgtcttcgtaattgattctacttgaagctagaatttgtagcttttgattctataattaatttttacacacaaatttc 28083908  T
Q  226 tagatcaactcacttttacatgaatgtatccaaacac 262  Q
     || ||| ||||||||||||||||| |||||||||||    
T  28083907 aagttcagctcacttttacatgaatatatccaaacac 28083871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 7524146 - 7524215
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    |||||||| |||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||    
T  7524146 tgattatagaattgatttttacacacaaatttatagttcaactcacttttacataaatgtgtccaaacac 7524215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 261
Target Start/End: Original strand, 3016158 - 3016263
Alignment:
Q  156 ataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatc 255  Q
    |||||||||| || ||||| ||| ||||| ||  || ||||| || ||||||| |||| ||| |||||||  | ||||||||||||||||||||||||||    
T  3016158 ataattgattctacttgaacttagaatttgtagcttttgattctagaattgatgtttacacataaatttacggttcaactcacttttacatgaatgtatc 3016257  T
Q  256 caaaca 261  Q
    ||||||    
T  3016258 caaaca 3016263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 11049283 - 11049347
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcca 257  Q
    ||||| || |||||||||||| |||||||||||||| |||| |||||||||| ||||||||||||    
T  11049283 tgattctaaaattgatttttacacacaaatttatagttcaagtcacttttacgtgaatgtatcca 11049347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 30557557 - 30557604
Alignment:
Q  215 acacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||    
T  30557557 acacaaatttatagttcaactcacttttatatgaatgtatccaaacac 30557604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 259
Target Start/End: Original strand, 3416078 - 3416179
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcca 257  Q
    |||||||| || || ||||||| |||| || ||| | ||| || |||||||||||| |||||||||||||| | |||||| ||||| ||| |||||||||    
T  3416078 aattgattatacttaaagttaagatttgtagttttttattttagaattgatttttacacacaaatttatagtttaactcaattttatatggatgtatcca 3416177  T
Q  258 aa 259  Q
    ||    
T  3416178 aa 3416179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 213589 - 213522
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaac 260  Q
    ||||| || |||||||||||| || ||||||| | | |||||||||||||||||||||| ||||||||    
T  213589 tgattctagaattgatttttaaactcaaatttgttgttcaactcacttttacatgaatgcatccaaac 213522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 7790693 - 7790644
Alignment:
Q  194 gattatataattgatttttagacacaaatttatagatcaactcactttta 243  Q
    |||| ||||||||||||||| |||||||||||| | ||||||||||||||    
T  7790693 gattctataattgatttttacacacaaatttattgttcaactcactttta 7790644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 10324990 - 10324921
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    ||||| ||||||||||||||| || ||||||||| | |  |||||||||||||| |||||||||| ||||    
T  10324990 tgattctataattgatttttacactcaaatttattgttatactcacttttacattaatgtatccatacac 10324921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 30850442 - 30850393
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatg 251  Q
    |||||||||| | | |||||||||||| ||||||||||||||||||||||    
T  30850442 aattgattttaacatacaaatttatagttcaactcacttttacatgaatg 30850393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 262
Target Start/End: Complemental strand, 32370106 - 32370014
Alignment:
Q  170 ttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    ||||||||| ||||| || ||| | ||| || ||||  |||||| |||||||||||||  | ||||  |||||||||||||||||||||||||    
T  32370106 ttgaagttagaatttgtaattttttattctagaattattttttacacacaaatttataattgaacttgcttttacatgaatgtatccaaacac 32370014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 34721886 - 34721826
Alignment:
Q  199 tataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaa 259  Q
    ||||||||||||| | |||||||||||||| || ||| |||||||||| ||||||| ||||    
T  34721886 tataattgattttcacacacaaatttatagttcgacttacttttacatcaatgtattcaaa 34721826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 47321950 - 47321902
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaat 250  Q
    |||||||||| | |||||||||||||| |||| ||||||||||||||||    
T  47321950 aattgattttcatacacaaatttatagttcaattcacttttacatgaat 47321902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 2099737 - 2099670
Alignment:
Q  196 ttatataattgatttttagacacaaatttatagatcaactcactttt-acatgaatgtatccaaacac 262  Q
    ||||| |||||||||| | ||| |||||||||| |||||||| |||| | ||||||||||||||||||    
T  2099737 ttatagaattgattttcacacataaatttatagctcaactcattttttatatgaatgtatccaaacac 2099670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 14334111 - 14334056
Alignment:
Q  197 tatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgt 252  Q
    ||||||||||||||| | |||||||||||||| | |||||||| |||| |||||||    
T  14334111 tatataattgattttcatacacaaatttatagttaaactcactcttacgtgaatgt 14334056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 38797672 - 38797614
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    |||||||||| | |||||||||||||| |||||||||||||| || ||||||| ||||||    
T  38797672 aattgattttcacacacaaatttatagttcaactcacttttaaat-aatgtatgcaaaca 38797614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 6590070 - 6590008
Alignment:
Q  151 tattcataattgattttatttgaagttaaaatttatactttatgattatataattgattttta 213  Q
    |||||| |||||||| ||||| |||||| ||||| || ||| | |||||||||||||||||||    
T  6590070 tattcagaattgattatatttaaagttagaatttgtagttttttattatataattgattttta 6590008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 11817368 - 11817303
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaa 259  Q
    ||||| || |||||||||||  |||||||||||||| |||||| |||||||||| ||||||| ||||    
T  11817368 tgattttaaaattgatttttt-acacaaatttatagttcaactaacttttacattaatgtattcaaa 11817303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 259
Target Start/End: Original strand, 47053465 - 47053503
Alignment:
Q  221 atttatagatcaactcacttttacatgaatgtatccaaa 259  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  47053465 atttatagtttaactcacttttacatgaatgtatccaaa 47053503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 52263689 - 52263631
Alignment:
Q  203 attgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    ||||||||||| || ||||||||| | | |||||| |||||||| ||||||||||||||    
T  52263689 attgatttttacactcaaatttattgtttaactcagttttacattaatgtatccaaaca 52263631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 254
Target Start/End: Complemental strand, 52339813 - 52339719
Alignment:
Q  160 ttgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtat 254  Q
    |||||||||||||||||||||| |||||  || | ||  || |||||| ||||| || ||||||||| | |||| |||| |||||| ||||||||    
T  52339813 ttgattttatttgaagttaaaaattatagcttctaatactagaattgagttttatactcaaatttattgttcaagtcacatttacacgaatgtat 52339719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 35961417 - 35961462
Alignment:
Q  209 ttttagacacaaatttatagatcaactcacttttacatgaatgtat 254  Q
    ||||| ||||||||||| |  |||||||||||||||||||||||||    
T  35961417 ttttatacacaaatttaaaattcaactcacttttacatgaatgtat 35961462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 1233350 - 1233406
Alignment:
Q  205 tgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    ||||||||| || ||||||||| | | |||||||||| ||||||||||||| |||||    
T  1233350 tgatttttacactcaaatttattgttgaactcactttcacatgaatgtatctaaaca 1233406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 34915099 - 34915167
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    ||||| || |||||||| | | |||| | ||||||  ||||||||||||||||||||||||| ||||||    
T  34915099 tgattctagaattgattctaacacaccattttataattcaactcacttttacatgaatgtattcaaaca 34915167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 45557408 - 45557489
Alignment:
Q  203 attgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacactaattactctgcctttaactca 284  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| ||| ||| | |||| ||||||    
T  45557408 attgatttttacacacaaatttgtagctcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactca 45557489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 38123709 - 38123627
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacactaattactctgcctttaactca 284  Q
    |||||||||||| || ||||||||| | ||||||||||||||||||||||| ||| ||||| ||||||| | |||| ||||||    
T  38123709 aattgatttttacactcaaatttattggtcaactcacttttacatgaatgtgtccgaacacaaattactttaccttcaactca 38123627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 40491611 - 40491677
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaa 259  Q
    ||||| || |||||| ||||| ||||||||||| || | ||||||||||||||||||||||||||||    
T  40491611 tgattctagaattgacttttacacacaaatttaaagtttaactcacttttacatgaatgtatccaaa 40491677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 25156242 - 25156302
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    |||||||||||| ||| ||||| ||| ||||||||||||||| |||||||||| |||||||    
T  25156242 aattgatttttacacataaattaataaatcaactcacttttatatgaatgtattcaaacac 25156302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 32938797 - 32938687
Alignment:
Q  134 gagtagaattaataatgtattcataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaa 233  Q
    |||| ||||||||  ||||||  ||||||||||||||| |||||| ||||| || ||| | ||| ||||||| | ||||||||  |||||||| | ||||    
T  32938797 gagtggaattaattttgtatttttaattgattttatttaaagttagaatttgtagtttttaattttataatttacttttagacttaaatttattgttcaa 32938698  T
Q  234 ctcacttttac 244  Q
    |||| ||||||    
T  32938697 ctcagttttac 32938687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 42816511 - 42816451
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    |||||||||| | |||||||||||||  |||| |||||| ||||||||||||| |||||||    
T  42816511 aattgattttcacacacaaatttataattcaattcacttctacatgaatgtatgcaaacac 42816451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 261
Target Start/End: Complemental strand, 40561773 - 40561742
Alignment:
Q  230 tcaactcacttttacatgaatgtatccaaaca 261  Q
    ||||||||||||||||||||||||||||||||    
T  40561773 tcaactcacttttacatgaatgtatccaaaca 40561742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 17111889 - 17111947
Alignment:
Q  204 ttgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    |||||| ||| |||||||||||||  || ||||| ||||||||||||| ||||||||||    
T  17111889 ttgattcttacacacaaatttataattctactcatttttacatgaatgcatccaaacac 17111947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 42344777 - 42344673
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcca 257  Q
    |||| ||| ||||||||||| |||||| ||   | ||||| |||||||||||||||  || ||||||  || |||||||| | |||||||||| |||| |    
T  42344777 aatttattctatttgaagttgaaatttgtagcatctgattctataattgatttttactcataaatttgaagttcaactcattattacatgaatatatcta 42344678  T
Q  258 aacac 262  Q
    |||||    
T  42344677 aacac 42344673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 33019243 - 33019139
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcca 257  Q
    |||||||| ||||||||| || ||||| ||  || || || || |||||||||| | ||| |||||||||| |||||||||||||||||||||| |||||    
T  33019243 aattgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatagttcaactcacttttacatgaatgcatcca 33019144  T
Q  258 aacac 262  Q
    |||||    
T  33019143 aacac 33019139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 16518834 - 16518880
Alignment:
Q  216 cacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  16518834 cacaaatttatagttcaactcacttttacatgaatgtatccaaacac 16518880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 8800744 - 8800682
Alignment:
Q  199 tataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    ||||||||||||| | | |||||||||||  |||||||||||||||||||| |||||||||||    
T  8800744 tataattgattttaatatacaaatttataattcaactcacttttacatgaacgtatccaaaca 8800682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 42982586 - 42982643
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaa 259  Q
    |||||||||||| ||||||||||||    |||||||||||||||||||||||||||||    
T  42982586 aattgatttttacacacaaatttattttacaactcacttttacatgaatgtatccaaa 42982643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 33502270 - 33502336
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    ||||| || |||||||||||| ||||| |||||||| |||||||||||||||   |||||||||||||||    
T  33502270 tgattctaaaattgatttttacacacatatttatagttcaactcacttttac---aatgtatccaaacac 33502336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 260
Target Start/End: Original strand, 10644613 - 10644703
Alignment:
Q  170 ttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaac 260  Q
    |||||||||| |||| || ||| | |||||| |||| | ||| | ||| |||||||||| |||||||||||||| || |||||||||||||    
T  10644613 ttgaagttaagatttgtagtttttcattatagaattaactttcatacataaatttatagttcaactcacttttatataaatgtatccaaac 10644703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 1976901 - 1976848
Alignment:
Q  208 tttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    |||||| || ||||||||| | | ||||||||||||||||||||||||||||||    
T  1976901 tttttacactcaaatttattgttgaactcacttttacatgaatgtatccaaaca 1976848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 11504113 - 11504053
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtat 254  Q
    |||||||| ||||| |||| | ||||||| |||||| |||||||||||||||||||||||||    
T  11504113 tgattatagaattg-ttttcacacacaaagttatagttcaactcacttttacatgaatgtat 11504053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 32596024 - 32596093
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    ||||| || |||||||||||| | ||||||| |||  ||||||||||||||||| ||| |||||||||||    
T  32596024 tgattctaaaattgatttttacatacaaattcataattcaactcacttttacataaatatatccaaacac 32596093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 13912829 - 13912889
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    |||| ||||||| |||||||||||  | |||||||| |||||||||| |||||||||||||    
T  13912829 aattaatttttacacacaaatttaccgttcaactcatttttacatgattgtatccaaacac 13912889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 33962033 - 33961978
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatga 248  Q
    ||||| |||||||||||||||||| ||||||||| | |||| ||| ||||||||||    
T  33962033 tgattctataattgatttttagactcaaatttattgttcaagtcatttttacatga 33961978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 40401658 - 40401603
Alignment:
Q  230 tcaactcacttttacatgaatgtatccaaacactaattactctgcctttaactcat 285  Q
    |||||| |||||||||||||||||||||||||  ||||| ||| |||| |||||||    
T  40401658 tcaactgacttttacatgaatgtatccaaacataaattagtctaccttcaactcat 40401603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 42740972 - 42741078
Alignment:
Q  155 cataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtat 254  Q
    ||||||||||| || |||||| ||| |||| ||  || ||||| || |||||||||||| || ||||||||  |  |||||||||||||||| |||||||    
T  42740972 cataattgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacactcaaatttactgtccaactcacttttacat-aatgtat 42741070  T
Q  255 ccaaacac 262  Q
     |||||||    
T  42741071 tcaaacac 42741078  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 45066438 - 45066509
Alignment:
Q  156 ataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttata 227  Q
    ||||||||||||| ||||||||||||||| || ||| | ||| || |||| ||||| | |||||||||||||    
T  45066438 ataattgattttagttgaagttaaaatttttagttttttattttaaaatttattttcacacacaaatttata 45066509  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 15220886 - 15220845
Alignment:
Q  220 aatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    ||||||| | |||||||||||| |||||||||||||||||||    
T  15220886 aatttattgttcaactcactttaacatgaatgtatccaaaca 15220845  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 22536031 - 22536100
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    ||||| || |||| ||||||  ||||| |||||||| | |||||| |||||||| |||||||||||||||    
T  22536031 tgattttagaattaatttttgcacacatatttatagttaaactcatttttacataaatgtatccaaacac 22536100  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 262
Target Start/End: Complemental strand, 680305 - 680273
Alignment:
Q  230 tcaactcacttttacatgaatgtatccaaacac 262  Q
    ||||||||||||||||||||||||| |||||||    
T  680305 tcaactcacttttacatgaatgtatgcaaacac 680273  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 4894209 - 4894141
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    ||||| ||||||||||| ||| || |||||||||   |||| ||||||||| ||||||||||| |||||    
T  4894209 tgattctataattgattattatactcaaatttattattcaagtcacttttaaatgaatgtatctaaaca 4894141  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 44439287 - 44439355
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    ||||| || |||||||||| | || ||||||||| | ||||||||||||||||| ||  ||||||||||    
T  44439287 tgattctaaaattgattttaacactcaaatttattgttcaactcacttttacataaacatatccaaaca 44439355  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 31708291 - 31708222
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    ||||| || |||||||| | | |||||||||||||  |||||||||||||||||||||||||||||||||    
T  31708291 tgattctagaattgattctaacacacaaatttataattcaactcacttttacatgaatgtatccaaacac 31708222  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 25359661 - 25359557
Alignment:
Q  158 aattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatcca 257  Q
    |||||||| || ||||||||| ||||| || ||| | ||| ||||||||||||| | ||||| |||||| | | || |||||| || |||||||||||||    
T  25359661 aattgattctacttgaagttagaatttgtagttttttattctataattgattttcacacacatatttattgttaaaatcacttctatatgaatgtatcca 25359562  T
Q  258 aacac 262  Q
    |||||    
T  25359561 aacac 25359557  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 41596201 - 41596133
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    |||||| | |||||||||||| |||||| ||||||| |  |||||||||| ||||||||||||||||||    
T  41596201 tgattaaagaattgatttttacacacaagtttatagtttgactcacttttccatgaatgtatccaaaca 41596133  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 4526165 - 4526224
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgt 252  Q
    ||||| || |||||||||||| |||||||||||||| ||||| ||||||||||| |||||    
T  4526165 tgattttaaaattgatttttacacacaaatttatagttcaacacacttttacataaatgt 4526224  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 33792058 - 33791988
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaa-ctcacttttacatgaatgtatccaaacac 262  Q
    ||||| ||||||||||||||| ||| |||||||| | | || ||||||||||||||||| |||||||||||    
T  33792058 tgattttataattgatttttacacataaatttattgtttaaactcacttttacatgaatctatccaaacac 33791988  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 246
Target Start/End: Original strand, 52364023 - 52364137
Alignment:
Q  132 tcgagtagaattaataatgtattcataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatc 231  Q
    ||||||||||||||| ||| ||  | ||||| || || |||||| ||  |||||||  || ||||| ||||||||||||| | ||| ||||||| || ||    
T  52364023 tcgagtagaattaatcatgcatcgagaattgtttctacttgaagctatgatttatagcttttgattctataattgattttcaaacataaatttacagttc 52364122  T
Q  232 aactcacttttacat 246  Q
    |||||||||||||||    
T  52364123 aactcacttttacat 52364137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 42913049 - 42913149
Alignment:
Q  155 cataattgattttatttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtat 254  Q
    ||||||||||| || ||||||||| |||||||| ||| | ||| || ||||||| |||| | |||| ||||||  |||||| | ||||||| ||||||||    
T  42913049 cataattgattatacttgaagttataatttataattttttattctagaattgatctttacaaacaattttatatttcaacttatttttacaagaatgtat 42913148  T
Q  255 c 255  Q
    |    
T  42913149 c 42913149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 270
Target Start/End: Complemental strand, 46551294 - 46551243
Alignment:
Q  219 aaatttatagatcaactcacttttacatgaatgtatccaaacactaattact 270  Q
    |||||||||| |||||||||||||| |||||||||| ||||||  |||||||    
T  46551294 aaatttatagctcaactcacttttatatgaatgtattcaaacaaaaattact 46551243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 47356320 - 47356238
Alignment:
Q  170 ttgaagttaaaatttatactttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgt 252  Q
    |||||||||| ||||||| | | |||||||| |||||||||||| ||| ||||||| || |||| |   ||||||||||||||    
T  47356320 ttgaagttaagatttatagtctttgattatagaattgatttttacacataaatttaaagttcaaattgtttttacatgaatgt 47356238  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 5406939 - 5407005
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    |||||||| |||||||||||| |||  ||||||    |||| |||||||||||||||||||||||||||    
T  5406939 tgattatagaattgatttttaaaca--aatttactcttcaaatcacttttacatgaatgtatccaaaca 5407005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Complemental strand, 35253510 - 35253453
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaa 259  Q
    |||||||||||| || |||||||||   ||||||||||||||||||| ||| ||||||    
T  35253510 aattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaa 35253453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 29305928 - 29305980
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtat 254  Q
    |||||||||||||||| |||||||||| | |  | ||||||||||||||||||    
T  29305928 aattgatttttagacataaatttatagtttattttacttttacatgaatgtat 29305980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 31013060 - 31013120
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacac 262  Q
    |||||||| | | ||||||||||| |  ||||||||||| |||||||||| ||||||||||    
T  31013060 aattgattctaacacacaaatttagaattcaactcacttgtacatgaatgcatccaaacac 31013120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 32523392 - 32523336
Alignment:
Q  193 tgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaa 249  Q
    ||||| || |||||||||||| ||||||||||| || | ||||||||| ||||||||    
T  32523392 tgattctaaaattgatttttacacacaaatttagagtttaactcacttatacatgaa 32523336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 34331686 - 34331754
Alignment:
Q  202 aattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaacactaattact 270  Q
    |||||||||||||||| ||| ||| |  |||| ||||||||| || ||||||| ||||||| |||||||    
T  34331686 aattgatttttagacataaagttaaaattcaattcacttttatataaatgtattcaaacacaaattact 34331754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 14169 - 14098
Alignment:
Q  190 ttatgattatataattgatttttagacacaaatttatagatcaactcacttttacatgaatgtatccaaaca 261  Q
    |||||||| || |||||||||||| || |||||||||   |||||||||||| |||||||||||||||||||    
T  14169 ttatgattctagaattgatttttacactcaaatttatttttcaactcactttcacatgaatgtatccaaaca 14098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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