View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0305_low_12 (Length: 288)

Name: NF0305_low_12
Description: NF0305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0305_low_12
NF0305_low_12
[»] chr8 (2 HSPs)
chr8 (93-242)||(31033539-31033687)
chr8 (148-206)||(13031592-13031650)
[»] chr5 (1 HSPs)
chr5 (59-206)||(41386127-41386273)
[»] chr6 (2 HSPs)
chr6 (89-210)||(27848899-27849019)
chr6 (132-212)||(11644739-11644819)
[»] scaffold0535 (1 HSPs)
scaffold0535 (95-209)||(8143-8256)
[»] chr4 (7 HSPs)
chr4 (89-209)||(4402458-4402577)
chr4 (170-210)||(14293030-14293070)
chr4 (170-210)||(14309079-14309119)
chr4 (140-215)||(9789320-9789395)
chr4 (180-210)||(55237394-55237424)
chr4 (154-207)||(18318007-18318060)
chr4 (154-207)||(18400619-18400672)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 93 - 242
Target Start/End: Complemental strand, 31033687 - 31033539
Alignment:
Q  93 gtgcaatatttctatggtttgagaaaaaagagagtagggacagagtcgtggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaatttcc 192  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  31033687 gtgcaatatttctatggtt-gagcaaaaagagagtagggacagagtcgtggtaggctaaccaaaaaagaaacttgagttttttcggaagctttaatttcc 31033589  T
Q  193 aaatccaagaccaagagaaattaaaattaaaatgagataccgtgtctgtg 242  Q
    ||||||||||||||||| ||||| |||||||||||||||  |||||||||    
T  31033588 aaatccaagaccaagaggaattagaattaaaatgagatattgtgtctgtg 31033539  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 13031650 - 13031592
Alignment:
Q  148 ctaaccaaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaa 206  Q
    ||||||||||||||||||| |  |||| ||  |||||||||||||||||||||||||||    
T  13031650 ctaaccaaaaaagaaacttaacctttttcgaaagctttaatttccaaatccaagaccaa 13031592  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 59 - 206
Target Start/End: Complemental strand, 41386273 - 41386127
Alignment:
Q  59 tcatcaagaccgcaacgtgagcaagtagctgaaggtgcaatatttctatggtttgagaaaaaagagagtagggacagagtcgtggcaggctaaccaaaaa 158  Q
    ||||||||||| ||||| || ||| |||| || |||||||||||||||||||| ||| |||| |||||||||| || ||| ||||||||| |||||||||    
T  41386273 tcatcaagaccacaacgagaacaaatagccgatggtgcaatatttctatggtt-gagtaaaaggagagtagggtcacagttgtggcaggccaaccaaaaa 41386175  T
Q  159 agaaacttgagtttttccggcagctttaatttccaaatccaagaccaa 206  Q
    ||||||||| | |||||| | |||||||||||||||||||||||||||    
T  41386174 agaaacttgtgcttttccagaagctttaatttccaaatccaagaccaa 41386127  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 27848899 - 27849019
Alignment:
Q  89 gaaggtgcaatatttctatggtttgagaaaaaagagagtagggacagagtcgtggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaat 188  Q
    ||||| ||||||||| ||||||| ||| ||||  |||||||||  ||| | |||||| || || ||||| || ||||| || ||||| || |||||||||    
T  27848899 gaaggagcaatatttatatggtt-gagtaaaagaagagtaggggaagaattgtggcaagccaagcaaaagaggaacttaagcttttcaggaagctttaat 27848997  T
Q  189 ttccaaatccaagaccaagaga 210  Q
    ||||||||||||||||| ||||    
T  27848998 ttccaaatccaagaccacgaga 27849019  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 11644819 - 11644739
Alignment:
Q  132 acagagtcgtggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaagagaaa 212  Q
    ||||||| ||| || ||||||||||  ||||||||||  |||| |||||||  |||||| |||||||||||||||||||||    
T  11644819 acagagttgtgacaagctaaccaaatgagaaacttgatctttttcggcagcagtaattttcaaatccaagaccaagagaaa 11644739  T

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Target: scaffold0535 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 209
Target Start/End: Complemental strand, 8256 - 8143
Alignment:
Q  95 gcaatatttctatggtttgagaaaaaagagagtagggacagagtcgtggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaatttccaa 194  Q
    ||||||||| ||||||| ||| |||| ||||||| ||  ||||| |||||| || |||||||||||||| ||  | ||||||   || ||||||||||||    
T  8256 gcaatatttatatggtt-gagcaaaaggagagtatggtaagagttgtggcaagccaaccaaaaaagaaatttatgcttttccaaaagttttaatttccaa 8158  T
Q  195 atccaagaccaagag 209  Q
    || ||||||||||||    
T  8157 atgcaagaccaagag 8143  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 4402577 - 4402458
Alignment:
Q  89 gaaggtgcaatatttctatggtttgagaaaaaagagagtagggacagagtcgtggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaat 188  Q
    ||||| ||||||||| ||||||| ||| ||||  |||||||||||| ||| |||||| || ||||||||||||||  |  | ||||| || ||   ||||    
T  4402577 gaaggagcaatatttatatggtt-gagcaaaagaagagtagggacatagttgtggcaagccaaccaaaaaagaaatctatgcttttcaggaagtagtaat 4402479  T
Q  189 ttccaaatccaagaccaagag 209  Q
    ||||||||||| |||||||||    
T  4402478 ttccaaatccatgaccaagag 4402458  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 14293070 - 14293030
Alignment:
Q  170 tttttccggcagctttaatttccaaatccaagaccaagaga 210  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  14293070 tttttctgggagctttaatttccaaatccaagaccaagaga 14293030  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 14309119 - 14309079
Alignment:
Q  170 tttttccggcagctttaatttccaaatccaagaccaagaga 210  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  14309119 tttttctgggagctttaatttccaaatccaagaccaagaga 14309079  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 215
Target Start/End: Complemental strand, 9789395 - 9789320
Alignment:
Q  140 gtggcaggctaaccaaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaagagaaatta 215  Q
    |||||| || ||||||| || ||| |||| |||||||||  | |||| ||||||||||||||||||||||| ||||    
T  9789395 gtggcaagccaaccaaataaaaaatttgattttttccggaggttttagtttccaaatccaagaccaagagatatta 9789320  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Original strand, 55237394 - 55237424
Alignment:
Q  180 agctttaatttccaaatccaagaccaagaga 210  Q
    |||||||||||||||||||||||||||||||    
T  55237394 agctttaatttccaaatccaagaccaagaga 55237424  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 18318007 - 18318060
Alignment:
Q  154 aaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaag 207  Q
    |||||||||| |||| ||||||||||||||  || ||||||| |||||||||||    
T  18318007 aaaaaagaaatttgattttttccggcagctaaaacttccaaacccaagaccaag 18318060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 18400672 - 18400619
Alignment:
Q  154 aaaaaagaaacttgagtttttccggcagctttaatttccaaatccaagaccaag 207  Q
    |||||||||| |||| ||||||||||||||  || ||||||| |||||||||||    
T  18400672 aaaaaagaaatttgattttttccggcagctaaaacttccaaacccaagaccaag 18400619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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