View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0305_low_13 (Length: 287)

Name: NF0305_low_13
Description: NF0305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0305_low_13
NF0305_low_13
[»] chr3 (11 HSPs)
chr3 (58-241)||(33942018-33942201)
chr3 (58-241)||(2282690-2282872)
chr3 (58-241)||(4118419-4118602)
chr3 (58-241)||(12514600-12514783)
chr3 (56-241)||(32428076-32428260)
chr3 (58-241)||(40466252-40466435)
chr3 (75-241)||(10284899-10285065)
chr3 (58-205)||(51546153-51546302)
chr3 (58-127)||(29773842-29773911)
chr3 (141-234)||(29774217-29774310)
chr3 (58-105)||(29774124-29774171)
[»] chr5 (5 HSPs)
chr5 (66-241)||(26751475-26751650)
chr5 (58-241)||(43297116-43297299)
chr5 (58-241)||(6555985-6556168)
chr5 (58-241)||(27007393-27007576)
chr5 (75-241)||(42345741-42345906)
[»] chr7 (10 HSPs)
chr7 (58-241)||(47864350-47864533)
chr7 (58-241)||(45166883-45167066)
chr7 (58-241)||(41152472-41152655)
chr7 (81-241)||(25568170-25568330)
chr7 (64-219)||(40441155-40441310)
chr7 (58-236)||(46793582-46793760)
chr7 (136-236)||(43377020-43377120)
chr7 (58-110)||(1298490-1298542)
chr7 (64-219)||(16795267-16795422)
chr7 (64-236)||(16793636-16793808)
[»] chr4 (6 HSPs)
chr4 (58-241)||(32718556-32718739)
chr4 (75-241)||(1593063-1593229)
chr4 (58-241)||(17930362-17930545)
chr4 (58-236)||(35430807-35430985)
chr4 (171-241)||(46515171-46515241)
chr4 (58-241)||(17498787-17498969)
[»] chr6 (4 HSPs)
chr6 (58-241)||(29231206-29231389)
chr6 (58-240)||(29267728-29267910)
chr6 (58-241)||(22865355-22865539)
chr6 (58-236)||(31859981-31860159)
[»] chr1 (7 HSPs)
chr1 (58-241)||(45474856-45475039)
chr1 (75-241)||(36355150-36355316)
chr1 (77-241)||(7405872-7406036)
chr1 (58-241)||(28865155-28865338)
chr1 (58-208)||(27285339-27285489)
chr1 (136-219)||(18884452-18884535)
chr1 (64-119)||(48139240-48139295)
[»] chr8 (3 HSPs)
chr8 (58-241)||(17441274-17441457)
chr8 (58-241)||(45119985-45120168)
chr8 (58-241)||(23230014-23230198)
[»] scaffold0006 (1 HSPs)
scaffold0006 (58-241)||(26776-26959)
[»] scaffold0325 (1 HSPs)
scaffold0325 (75-241)||(6101-6265)
[»] chr2 (2 HSPs)
chr2 (75-241)||(13331158-13331328)
chr2 (168-217)||(28421167-28421216)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 33942201 - 33942018
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  33942201 acatcttcaaattcttcgtttcctttaaccggaatgtcatcaaacatagttggattgtcttcatttgttggtttttttggtggaaccggtctctctttgt 33942102  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33942101 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatctcatgtttttgcctcatcgctcctatgat 33942018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 2282690 - 2282872
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||| ||    
T  2282690 acatcttcaaattcttcgttttctttaaccggagtgtcatcaaacataattggattgtcttcatttgttggttcttttggtggaaccggtctctctt-gt 2282788  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2282789 cctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 2282872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 4118419 - 4118602
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||       ||||||||||||||||||||||    
T  4118419 acatcttcaaattcttcgttttctttaaccggagtgtcatcaaacataattggattgtctttatttgttggttttttaggtggaaccggtctctctttgt 4118518  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    ||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4118519 ccttaatctccatgagtgctcgcaaacgatcgtgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 4118602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 12514783 - 12514600
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||    
T  12514783 acatcttcaaattcttcgttttctttaatcggagtgtcatcaaacataattggattgtcttcatttgttggttcttttggtggaaccggtctctctttgt 12514684  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  12514683 cctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattcataatttcatgtttttgcctcatcgctcctatgat 12514600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 56 - 241
Target Start/End: Complemental strand, 32428260 - 32428076
Alignment:
Q  56 ggacatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctcttt 155  Q
    ||||||| ||||||| || |||||||| |||||||||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||    
T  32428260 ggacatcttcaaattttttgtttcctt-aaccggagtgtcatcaaacataattggattgtcttcatttgttggtttttttggtggaaccggtctctcttt 32428162  T
Q  156 gtcctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    ||||||||||||||||| |||||||||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  32428161 gtcctcaatctccatgaatgctcggaaacgatcgtgctgatccaataattcataatcccatgtttttgcttcatcgctcctatgat 32428076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 40466252 - 40466435
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||   |||| |||||||||||||||||||||||||| |||||||||||| |||||||||       |||| |||||||||||||||||    
T  40466252 acatcttcaaattcggtgtttgctttaaccggagtgtcatcaaacataattggattgtctttatttgttggtttttttggtgtaaccggtctctctttgt 40466351  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| |||||||||    
T  40466352 cctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattcataatctcatgtttttgtctcatcgttcctatgat 40466435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 75 - 241
Target Start/End: Original strand, 10284899 - 10285065
Alignment:
Q  75 gtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgtcctcaatctccatgagt 174  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||       | |||||||  ||||||||||||||||||||||||||||    
T  10284899 gtttgctttaaccggagtgtcatcaaacataattggattgtcttcatttgttggtttttttgttggaaccattctctctttgtcctcaatctccatgagt 10284998  T
Q  175 gctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  10284999 gctcggaaacaatcgtgttgatccaagaatttataatcccatgtttttgcctcatcgctccaatgat 10285065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 58 - 205
Target Start/End: Original strand, 51546153 - 51546302
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttgg--nnnnnnnggtggaaccggtctctcttt 155  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||          |||||||||||||||||||    
T  51546153 acatcttcaaattcttcgtttcctttaaccggagtgtcatcaaacataattggattgtcttcatttgttggttttttttttgtggaaccggtctctcttt 51546252  T
Q  156 gtcctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaatt 205  Q
       |||||| |||||||||| ||||||||||||| |||||||||||||||    
T  51546253 tagctcaatgtccatgagtgttcggaaacgatcgtgttgatccaagaatt 51546302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 29773842 - 29773911
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttg 127  Q
    ||||| ||||||||||| |||||||||| ||||||||||||||||||| | | |||||||| ||||||||    
T  29773842 acatcttcaaattcttcatttcctttaatcggagtgtcatcaaacataatagtattgtcttgatttgttg 29773911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 29774217 - 29774310
Alignment:
Q  141 aaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctc 234  Q
    ||||| |||||||||   ||||||||||||||||| ||| ||||||||| ||||||||||||||||||  ||||| | | ||||||| ||||||    
T  29774217 aaccgatctctcttttagctcaatctccatgagtgttcgaaaacgatcgtgttgatccaagaattcatcctcccaagctgttgcctcttcgctc 29774310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 29774124 - 29774171
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacata 105  Q
    ||||| ||||||||||| |||||||||| |||||||||||||||||||    
T  29774124 acatcttcaaattcttcatttcctttaatcggagtgtcatcaaacata 29774171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 66 - 241
Target Start/End: Complemental strand, 26751650 - 26751475
Alignment:
Q  66 aaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgtcctcaatc 165  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||| |||||||||||||||||||||    
T  26751650 aaattcttcgtttcctttaaccggagtgtcatcaaacataattggattgtcttcatttgttggtttttttggtggaactggtctctctttgtcctcaatc 26751551  T
Q  166 tccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26751550 tccatgagtgctcggaaacgatcgtgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 26751475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 43297299 - 43297116
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||    
T  43297299 acatcttcaaattcttcgtttcctttaaccggagtgtcatcaaacataattggattgtcttcatttgttggtttttttggtggaaccggtctctctttgt 43297200  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43297199 cctcaatctccatgagtgcttggaaacgatcgtgttgatccaagaattcataatcccatgtttttgcctcatcactcctatgat 43297116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 6556168 - 6555985
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||       ||||||| ||||||||||||||    
T  6556168 acatcttcaaattcttcgtttcctttaaccggagtgtcatgaaacataattggattgtcttcatttgttggtttttttggtggaatcggtctctctttgt 6556069  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    | |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  6556068 cttcaatctccatgagtgctcggaaacgatcgtgttaatccaagaattcataatctcatgtttttgcctcatcgctcctatgat 6555985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 27007393 - 27007576
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||   |||| |||||||||||||||||||||||||| | ||||||||||||||||||||       ||||||||||||||||||||||    
T  27007393 acatcttcaaattcggtgtttgctttaaccggagtgtcatcaaacataatgggattgtcttcatttgttgggttttttggtggaaccggtctctctttgt 27007492  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27007493 cctcaatctccatgagtgctcgaaaacgatcgtgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 27007576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 75 - 241
Target Start/End: Complemental strand, 42345906 - 42345741
Alignment:
Q  75 gtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgtcctcaatctccatgagt 174  Q
    |||| |||||||||||||||||||||||||| |||||||||||| |||||||||       | |||||||| | ||||||||||||||||||||||||||    
T  42345906 gtttgctttaaccggagtgtcatcaaacataattggattgtcttgatttgttggtttttttg-tggaaccgatgtctctttgtcctcaatctccatgagt 42345808  T
Q  175 gctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42345807 gctcggaaacgatcgtgttgatccaagaattcataatcccatgtttttgcctcatcgctcccatgat 42345741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 9e-73; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 47864350 - 47864533
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||       |||||||||||| |||||||||    
T  47864350 acatcttcaaattcttcgtttcctttaaccggagtgtcatcaaatataattggattgtcttcatttgttggtttttttggtggaaccggtttctctttgt 47864449  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47864450 cctcaatctccatgagtgctcggaaacgatcgtgtggatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 47864533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 45166883 - 45167066
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||    
T  45166883 acatcttcaaattcttcattttctttaaccggagtgtcatcaaacataattggattgtcttcatttgttggttcttttggtggaaccggtctctctttgt 45166982  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    ||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45166983 cctcaatctccatgagtactcagaaacgatcgtgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 45167066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 41152655 - 41152472
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||       |||||||||||||||||||| |    
T  41152655 acatcttcaaattcttcgtttcctttaaccggagtgtgaacaaacataattggattgtcttcatttgttggtttttttggtggaaccggtctctctttat 41152556  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||||||||||    
T  41152555 cctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattcataatctcatgcttttgccccatcgctcctatgat 41152472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 81 - 241
Target Start/End: Original strand, 25568170 - 25568330
Alignment:
Q  81 tttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgtcctcaatctccatgagtgctcgg 180  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |       |||||||||||||||||||||||||||||||||||||||||||||    
T  25568170 tttaaccggagtgtcatcaaacataattggattgtcttcatttgtttgtttatttggtggaaccggtctctctttgtcctcaatctccatgagtgctcgg 25568269  T
Q  181 aaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    ||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  25568270 aaacgatcgtgttgatcaaagaattcataatcccatgtatttgcctcatcgctcctatgat 25568330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 64 - 219
Target Start/End: Original strand, 40441155 - 40441310
Alignment:
Q  64 tcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgtcctcaa 163  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||       |||||||| |||||||||||||||||||    
T  40441155 tcaaattcttcgttttctttaaccggagtgtcatcaaacataattgaattgtcttcatttgttggtttttttggtggaactggtctctctttgtcctcaa 40441254  T
Q  164 tctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  40441255 tctccatgagtgctcggaaacgatcgcgttgatccaagaattcatcctcccatgtt 40441310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 58 - 236
Target Start/End: Complemental strand, 46793760 - 46793582
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||       |||||||||||||||| |||||    
T  46793760 acatcttcaaattcttcgtttcctttaaccggtgtgtcatcaaacataattgaattgtcttcatttgttggtttttttggtggaaccggtctctttttgt 46793661  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcct 236  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||  ||||||||| | ||||| ||||||||    
T  46793660 cctcaatctccatgagtgctcgaaaacgatcgtgttgatccaagaattcatcctcccatgttgtcgcctcttcgctcct 46793582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 43377020 - 43377120
Alignment:
Q  136 ggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcc 235  Q
    ||||||||||||||||||||   |||||| |||||||||||||||||||||||| |||||||||||| |||||  |||||||||   ||||| |||||||    
T  43377020 ggtggaaccggtctctcttttagctcaatgtccatgagtgctcggaaacgatcgtgttgatccaagatttcatcctcccatgttgccgcctcttcgctcc 43377119  T
Q  236 t 236  Q
    |    
T  43377120 t 43377120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 1298542 - 1298490
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttgg 110  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||| ||||    
T  1298542 acatcttcaaattctccgtttcctttaaccggagtgtcatcaaacataattgg 1298490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 219
Target Start/End: Original strand, 16795267 - 16795422
Alignment:
Q  64 tcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgtcctcaa 163  Q
    ||||||||||| ||| ||||||||||||||||  || ||| | | |||||||||| |||||||||       |||| ||||||||| | |   | |||||    
T  16795267 tcaaattcttcatttgctttaaccggagtgtctccacacaaaataggattgtcttgatttgttggtatttttggtgtaaccggtctatttcctttctcaa 16795366  T
Q  164 tctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtt 219  Q
    |||| ||||||| | ||||||| | | |||||||||| |||||||  |||||||||    
T  16795367 tctctatgagtgtttggaaacggttgtgttgatccaaaaattcatcctcccatgtt 16795422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 236
Target Start/End: Original strand, 16793636 - 16793808
Alignment:
Q  64 tcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgtcctcaa 163  Q
    ||||||||||| ||| ||||||||| ||||||  || | | | | |||||||| | |||||||||       |||||||||  |||||||   | |||||    
T  16793636 tcaaattcttcatttgctttaaccgaagtgtctccacaaaaaataggattgtcatgatttgttggatttttgggtggaaccaatctctctcctttctcaa 16793735  T
Q  164 tctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcct 236  Q
    |||  |||| || ||||||||||||| |||||||||| |||||||  |||||||||   ||||| ||||||||    
T  16793736 tctatatgattgttcggaaacgatcgtgttgatccaaaaattcatcctcccatgttgccgcctcttcgctcct 16793808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 9e-73; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 32718739 - 32718556
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||       |||||||| |||||||||||||    
T  32718739 acatcttcaaattcttcgtttcctttaactggagtgtcatcaaacataattggattgtcttcatttgttggtttttttggtggaacgggtctctctttgt 32718640  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32718639 cctcaatctccacgagtgctcggaaacgatcgtgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 32718556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 75 - 241
Target Start/End: Complemental strand, 1593229 - 1593063
Alignment:
Q  75 gtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgtcctcaatctccatgagt 174  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||| ||    
T  1593229 gtttgctttaaccggagtgtcatcaaacataattggattgtcttcatttattggtttttttggtggaaccggtctctctttgtcctcaatctccatgggt 1593130  T
Q  175 gctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  1593129 gctcgaaaacgatcgtgttgatccaagaattcataatcccatgtttttgcttcatcgctcttatgat 1593063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 17930545 - 17930362
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||   |||| |||||||||||||||| ||||||||| |||||||||||| |||||||||       | ||||||||||||||||||||    
T  17930545 acatcttcaaattcggtgtttgctttaaccggagtgtcgtcaaacataattggattgtctttatttgttggtttttttgatggaaccggtctctctttgt 17930446  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  17930445 cctcaatctccatgagtactcggaaacaatcgtgttgatccaagaattcataatctcatggttttgcctcatcgctcctatgat 17930362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 58 - 236
Target Start/End: Complemental strand, 35430985 - 35430807
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||       ||||||||||| ||||||||||    
T  35430985 acatcttcaaattcttcgttttctttaaccggagtgtcatcaaacataattggattgtcttcatttgttggtttttttggtggaaccggactctctttgt 35430886  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcct 236  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||||||||  |||||||||   ||||| ||||||||    
T  35430885 cctcaatctccgggagtgctcggaaacgatcgtgttgatccaagaattcatcctcccatgttgccgcctcttcgctcct 35430807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 46515171 - 46515241
Alignment:
Q  171 gagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46515171 gagtgctcggaaacgatcgtgttgatccaagaattcataatccaatgtttttgcctcatcgctcctatgat 46515241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 17498969 - 17498787
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| |||||||||| |||| ||||||||| |||||||||||||||| | | |||||||| |||||||||       |||| |||||||||||||||      
T  17498969 acatcttcaaattctttgtttgctttaaccgcagtgtcatcaaacataatagaattgtcttgatttgttggtttttt-ggtgaaaccggtctctctttta 17498871  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
     |||||||||||||||||  || ||||||||| | ||||| ||||||||||  ||||||||| | ||||||| |||||| ||||    
T  17498870 gctcaatctccatgagtgtacgaaaacgatcgtgatgatctaagaattcatcctcccatgttgtcgcctcattgctcctttgat 17498787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 29231206 - 29231389
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||||| ||| ||||||| |||||||||||||||||| ||||||||||||||||||||||       ||||||| ||||||||||||||    
T  29231206 acatcttcaaattcttcattttctttaactggagtgtcatcaaacataattggattgtcttcatttgttggttcttttggtggaatcggtctctctttgt 29231305  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29231306 cctcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 29231389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 58 - 240
Target Start/End: Complemental strand, 29267910 - 29267728
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||    
T  29267910 acatcttcaaattcttcgttttctttaactggagtgtcatcaaacataattggattgtcttcatttgttggttcttttggtggaaccggtctctctttgt 29267811  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatga 240  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29267810 cctcaatctccatgagtgctcagaaacgatcgtgttgatccaagaattcataatcccatatttttgcctcatcgctcctatga 29267728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 22865539 - 22865355
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| | |||||||       |||||||||| |||||||||||    
T  22865539 acatcttcaaatttttcgtttcctttaaccgtagtgtcatcaaacataattggattgtctttagttgttggtttttttggtggaaccgatctctctttgt 22865440  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgt-ttttgcctcatcgctcctatgat 241  Q
    | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  22865439 catcaatctccatgagtgctcggaaacgatcgtgttgatccaagaattcataatcccatgtttttttcctcatcgatcctatgat 22865355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 58 - 236
Target Start/End: Complemental strand, 31860159 - 31859981
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||   |||| |||||||||||||||||||||||||| |||||||||||| ||||||| |       ||||||||||||||||| ||      
T  31860159 acatcttcaaattcggtgtttgctttaaccggagtgtcatcaaacataattggattgtcttgatttgtttgtttttttggtggaaccggtctctcattta 31860060  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcct 236  Q
     |||||| |||||||||| ||||||||||||| ||||||| || |||||||  |||||||||   ||||| ||||||||    
T  31860059 gctcaatgtccatgagtgttcggaaacgatcgtgttgatcaaataattcatcctcccatgttgccgcctcttcgctcct 31859981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 45475039 - 45474856
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||       |||||||||| |||||||||||    
T  45475039 acatcttcaaattcttcgttttctttaaccggagtgtcatcaaacataatttgattgtcttcatttgttggtttttttggtggaaccgatctctctttgt 45474940  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45474939 cctcaatctccatgagtgctcggaaatgatcgtgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 45474856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 75 - 241
Target Start/End: Original strand, 36355150 - 36355316
Alignment:
Q  75 gtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgtcctcaatctccatgagt 174  Q
    |||| |||||||||||||||||||||||||| |||||||||||| |||||||||       |||||||||||||||| ||||||||||||||||||||||    
T  36355150 gtttgctttaaccggagtgtcatcaaacataattggattgtcttgatttgttggtttttttggtggaaccggtctctgtttgtcctcaatctccatgagt 36355249  T
Q  175 gctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36355250 gctcggaaacgatcgtgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 36355316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 77 - 241
Target Start/End: Complemental strand, 7406036 - 7405872
Alignment:
Q  77 ttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgtcctcaatctccatgagtgc 176  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||    
T  7406036 ttcctttaaccggagtgtcatcaaacataattggattgtcttcatttgttggtttttttggtggaactggtctctctttgtcctcaatctccatgagtgc 7405937  T
Q  177 tcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    | ||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7405936 ttggaaacgctcgtgttgatccaagaattcataatcccatgtttttgcctcatcactcctatgat 7405872  T

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Target: chr1; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 28865338 - 28865155
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||   |||| ||||||||| ||| |||||||||||| |||||||||||| |||||||||       ||||||||||||||||||||||    
T  28865338 acatcttcaaattcggtgtttgctttaaccgaagtatcatcaaacataattggattgtcttgatttgttggtttttttggtggaaccggtctctctttgt 28865239  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  28865238 cctcaatctccatgagtgctcgaaaacgatcgtgttgatccaagaattcataaactcatgtttttgcctcatcgctcctatgat 28865155  T

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Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 58 - 208
Target Start/End: Complemental strand, 27285489 - 27285339
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||       ||   |||||||||||||||      
T  27285489 acatcttcaaattcttcgtttcctttaaccggagtgtcatcaaacataataggattgtcttgatttgttggtttttttgggaaaaccggtctctctttta 27285390  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcat 208  Q
     ||||||||||||||||| ||| ||||||||| ||||||||||||||||||    
T  27285389 gctcaatctccatgagtgttcgaaaacgatcgtgttgatccaagaattcat 27285339  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 136 - 219
Target Start/End: Original strand, 18884452 - 18884535
Alignment:
Q  136 ggtggaaccggtctctctttgtcctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtt 219  Q
    |||||||||||| |||||||   ||||||||||||||||| ||||||||||||  |||||||||||||||||| ||||||||||    
T  18884452 ggtggaaccggtttctcttttagctcaatctccatgagtgttcggaaacgatcatgttgatccaagaattcatgatcccatgtt 18884535  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 48139240 - 48139295
Alignment:
Q  64 tcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttc 119  Q
    ||||||||||||||| |||||||||||||||||||||||||| || ||||||||||    
T  48139240 tcaaattcttcgttttctttaaccggagtgtcatcaaacataattagattgtcttc 48139295  T

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Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 17441457 - 17441274
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||   |||| |||||||||||||||||||||||||| |||||||||||| |||||||||       ||||||||||||||||||||||    
T  17441457 acatcttcaaattcggtgtttgctttaaccggagtgtcatcaaacataattggattgtcttgatttgttggtttgtttggtggaaccggtctctctttgt 17441358  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17441357 cctcaatctccatgagtgctcagaaacgatcgtgttgattcaagaattcataatcccatgtttttgcctcatcgctcctatgat 17441274  T

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Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 45120168 - 45119985
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||   |||| |||||||||||||||||| ||||||| ||||||| |||| |||||||||       ||||||||||||||||||||||    
T  45120168 acatcttcaaattcggtgtttgctttaaccggagtgtcattaaacataattggattctcttgatttgttggtttttttggtggaaccggtctctctttgt 45120069  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    |||||||||||||||||| ||||||||||||| ||||||| |||||||||| | |||||||||||||||||||||| |||||||    
T  45120068 cctcaatctccatgagtgttcggaaacgatcgtgttgatctaagaattcattagcccatgtttttgcctcatcgcttctatgat 45119985  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 23230198 - 23230014
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggt-ggaaccggtctctctttg 156  Q
    ||||| ||||||||   |||| ||||||| |||||||||| ||||||| ||||||| |||| |||||||||        || ||||||||||||||||||    
T  23230198 acatcttcaaattcggtgtttgctttaacgggagtgtcattaaacataattggattttcttgatttgttggttttttttgttggaaccggtctctctttg 23230099  T
Q  157 tcctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    ||||||||||||||||||| ||| || |||||| |||||||||||||||||| ||||||||||   ||||||| |||||| ||||    
T  23230098 tcctcaatctccatgagtgttcgaaagcgatcgtgttgatccaagaattcatgatcccatgttgccgcctcattgctcctgtgat 23230014  T

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Target: scaffold0006 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 26776 - 26959
Alignment:
Q  58 acatcatcaaattcttcgtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgt 157  Q
    ||||| ||||||||||| ||||||||||| ||||||| ||||||| || ||||||||||||||||||||||       ||||||||||||||||||||||    
T  26776 acatcttcaaattcttcatttcctttaactggagtgtgatcaaacgtaattggattgtcttcatttgttggtttttttggtggaaccggtctctctttgt 26875  T
Q  158 cctcaatctccatgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    | ||||| || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876 catcaatatcaatgagtgctcgaaaacgatcgtgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 26959  T

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Target: scaffold0325 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 75 - 241
Target Start/End: Complemental strand, 6265 - 6101
Alignment:
Q  75 gtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnnggtggaaccggtctctctttgtcctcaatctccatgagt 174  Q
    |||| |||||||||||||||||||||||||| ||||||||||  ||||||||||       |||| |||||||||||||||||||  |||||||||||||    
T  6265 gtttgctttaaccggagtgtcatcaaacataattggattgtc--catttgttggtttttttggtgcaaccggtctctctttgtccaaaatctccatgagt 6168  T
Q  175 gctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
    || |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6167 gcccggaaacgatcgtgttgatccaagaattcataatcccatgtttttgcctcatcactcctatgat 6101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 75 - 241
Target Start/End: Complemental strand, 13331328 - 13331158
Alignment:
Q  75 gtttcctttaaccggagtgtcatcaaacatagttggattgtcttcatttgttggnnnnnnng----gtggaaccggtctctctttgtcctcaatctccat 170  Q
    |||| |||||||||||||||||| ||||||| |||||||||||| ||||||||             ||||||||||||||||||||||||||||||||||    
T  13331328 gtttgctttaaccggagtgtcattaaacataattggattgtcttgatttgttgattttttttttttgtggaaccggtctctctttgtcctcaatctccat 13331229  T
Q  171 gagtgctcggaaacgatcgcgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 241  Q
     |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13331228 aagtgctcgaaaacgatcgtgttgatccaagaattcataatcccatgtttttgcctcatcgctcctatgat 13331158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 28421167 - 28421216
Alignment:
Q  168 catgagtgctcggaaacgatcgcgttgatccaagaattcataatcccatg 217  Q
    |||||||| | |||||||||||||||||||||| |||||||  |||||||    
T  28421167 catgagtgtttggaaacgatcgcgttgatccaaaaattcatcttcccatg 28421216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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