View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0305_low_14 (Length: 284)
Name: NF0305_low_14
Description: NF0305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0305_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 71 - 251
Target Start/End: Complemental strand, 31140737 - 31140552
Alignment:
| Q |
71 |
tatttacaaatcaattgcatcctcacaatggcagcagaatttgaattcttatccttgtggcttagtcaggaccatttctaggattttggtggtctagggg |
170 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| || |
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| T |
31140737 |
tatttacaaatcaattgcatcctcacgatggcagcagaatttgaattcttatccttgcggcttagtcgagaccatttctaagattttggtggtctaaagg |
31140638 |
T |
|
| Q |
171 |
taaacttataatttagactctaac----taataagtatata-aattttttgaattcataaagtgtgaataattttctttaagatga |
251 |
Q |
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| T |
31140637 |
caaacctataatttagactctaactaattaataagtatatatttttttttgaattcataaaatgtgaataattttctttaagatga |
31140552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 35168122 - 35168200
Alignment:
| Q |
152 |
gattttggtggtctaggggtaaacttataatttagactctaactaataagtatataaattttttgaattcataaagtgt |
230 |
Q |
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|||| |||||||||| |||| ||| |||||||||||||| |||||| |||| |||| | ||||||||| |||||||| |
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| T |
35168122 |
gattgtggtggtctaagggtgaacctataatttagactcaaactaacaagtgtatagaaaatttgaattcctaaagtgt |
35168200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 28096616 - 28096556
Alignment:
| Q |
191 |
taactaataagtatataaattttttgaattcataaagtgtgaataattttctttaagatga |
251 |
Q |
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| T |
28096616 |
taactaataagtatatcaaaaatttgaattcctaaaatgcgaataattttctttaagatga |
28096556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 21925211 - 21925145
Alignment:
| Q |
177 |
tataatttagactctaactaataagtatataaattttttgaattcataaagtgtgaataattttctt |
243 |
Q |
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|||||||||| | ||||||||||||||||||| |||| ||| ||||||||||||||||||||| |
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| T |
21925211 |
tataatttaggccataactaataagtatataaaaaatttgcatttctaaagtgtgaataattttctt |
21925145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 35318237 - 35318269
Alignment:
| Q |
171 |
taaacttataatttagactctaactaataagta |
203 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
35318237 |
taaacttataatttaggctctaactaataagta |
35318269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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