View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0305_low_15 (Length: 281)
Name: NF0305_low_15
Description: NF0305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0305_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 27219651 - 27219797
Alignment:
| Q |
90 |
atgctcacgagactatcacaaggccacattaatatgcacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatttttaatagag |
189 |
Q |
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| T |
27219651 |
atgctcacgggactaccacaaggccacattaatatgtacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatatttaatagag |
27219750 |
T |
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| Q |
190 |
ttttacactgttgagtatgttcaaattaaatccttacactaaattca |
236 |
Q |
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| T |
27219751 |
ttttacactgttgagtatgtacaaattaaatccttacactaaattca |
27219797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 27217018 - 27217149
Alignment:
| Q |
106 |
cacaaggccacattaatatgcacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatttttaatagagttttacactg-ttgag |
204 |
Q |
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||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| | ||| |
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| T |
27217018 |
cacaaggccactttattatgttcctaaatatctccacaaatatttacatgatgagatattattcaatgtacattgtaaatacagttttacactgatcgag |
27217117 |
T |
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| Q |
205 |
tatgttcaaattaaatccttacactaaattca |
236 |
Q |
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||||| |||||||||||||||||||||||||| |
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| T |
27217118 |
tatgtacaaattaaatccttacactaaattca |
27217149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 236
Target Start/End: Original strand, 37580461 - 37580590
Alignment:
| Q |
109 |
aaggccacattaatatgcacctaaatatctttacaaatatttacatgatgagatattattcaatgtacatttttaatagagttttacactg-ttgagtat |
207 |
Q |
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|||||||| ||| ||||| ||| |||||| |||||||||||||| |||||||||| ||| || ||||| | || | |||||||||||| |||||||| |
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| T |
37580461 |
aaggccactttattatgctcctttatatctctacaaatatttacacgatgagatatgatttgatatacatataaaagacagttttacactgattgagtat |
37580560 |
T |
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| Q |
208 |
gttcaaattaaat-ccttacactaaattca |
236 |
Q |
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| T |
37580561 |
atacaaattaaatcccctacactaaattca |
37580590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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