View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0305_low_2 (Length: 651)
Name: NF0305_low_2
Description: NF0305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0305_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 87 - 651
Target Start/End: Complemental strand, 3716540 - 3715977
Alignment:
| Q |
87 |
acatcatcatctttgttgttagactcaggcttgggtttcctataagcctgttctaggtgactcgcgaccgaaacagccatggaagcgagcttcttcacgt |
186 |
Q |
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| T |
3716540 |
acatcatcgtctttgttgttagactcaggcttgggtttcctataagcctgttctaggtgactcgcgaccgaaacagccatggaagcaagcttcttcacgt |
3716441 |
T |
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| Q |
187 |
ttggtacgttgtagttctgagctatgtacactcctaaaccggttcctgcgatgaacgacatgctgcttttaataaaccaagccatcgagcagcagttttt |
286 |
Q |
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| T |
3716440 |
ttggtacgttgtagttctgagctatgtacactcctaaaccggttcctgcgatgaacgacatgctgcttttaataaaccaagccatcgagaagcacttttt |
3716341 |
T |
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| Q |
287 |
ggatctgaaatcgcttttgtgtattcgtctattttattttttggcgtggcttctatatttatatagtatggtttaggtctttggtttacgtttaacccct |
386 |
Q |
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| T |
3716340 |
ggatctgaaatcgcttttgtgtattcgtctattct-tttcttggcgtggtttctatatttatatagtatggtttaggtctttggtttacgtttaacccct |
3716242 |
T |
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| Q |
387 |
tgaccaagccaattttctttcggaaaaagaaaattaaatgaaagccccttccccaagcattgttgttattttttagtatatatcccgttgcgcaagtagt |
486 |
Q |
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| T |
3716241 |
tgaccaagccaattttctttcggaaaaagaaaattaaatgaaagccccttccccaagcattgttgttattttttaggatatatcccgttgcgcaagtagt |
3716142 |
T |
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| Q |
487 |
cattaaaaaagatttcttgaattttctgaaattccaattacatcctttcttagtaattttatggattggcttcaaatttaataaaaatatttacgttcaa |
586 |
Q |
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| T |
3716141 |
cattaaaaaatatttcttgaattttctgaaattccaattacatcctttcttagtaattttatggattggctacaaatttaacaaaaatatttacgttaaa |
3716042 |
T |
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| Q |
587 |
gctgtaaattttggagtcaaaataacaagggttagattgtgagctttttaaagtgtttaatttta |
651 |
Q |
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| T |
3716041 |
gatgtagattgtggagtcaaaataaaaagggttagattgtgagcttattaaagagtttaatttta |
3715977 |
T |
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