View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0305_low_20 (Length: 252)

Name: NF0305_low_20
Description: NF0305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0305_low_20
NF0305_low_20
[»] chr6 (28 HSPs)
chr6 (22-171)||(15533104-15533253)
chr6 (1-138)||(15541542-15541679)
chr6 (2-171)||(30729231-30729379)
chr6 (22-171)||(13883095-13883244)
chr6 (22-171)||(31249127-31249276)
chr6 (22-171)||(35201739-35201888)
chr6 (63-173)||(35209015-35209125)
chr6 (115-171)||(26066588-26066644)
chr6 (115-171)||(33310921-33310977)
chr6 (129-171)||(22344783-22344825)
chr6 (90-138)||(15530613-15530661)
chr6 (64-138)||(26642829-26642903)
chr6 (64-138)||(26748795-26748869)
chr6 (63-140)||(1230692-1230769)
chr6 (63-139)||(17695307-17695383)
chr6 (63-139)||(26064755-26064831)
chr6 (63-139)||(26084724-26084800)
chr6 (66-138)||(28241788-28241860)
chr6 (90-138)||(1072347-1072395)
chr6 (90-138)||(8995255-8995303)
chr6 (90-138)||(9019702-9019750)
chr6 (90-138)||(24191620-24191668)
chr6 (90-138)||(24192717-24192765)
chr6 (63-138)||(26887679-26887754)
chr6 (63-138)||(30975153-30975228)
chr6 (63-138)||(30981592-30981667)
chr6 (63-138)||(30987756-30987831)
chr6 (1-139)||(19227811-19227949)
[»] chr3 (39 HSPs)
chr3 (1-138)||(45882659-45882796)
chr3 (21-138)||(18162405-18162522)
chr3 (21-173)||(10595424-10595576)
chr3 (63-173)||(54192862-54192972)
chr3 (63-171)||(47878606-47878714)
chr3 (63-171)||(35918411-35918519)
chr3 (63-171)||(4308743-4308851)
chr3 (63-171)||(16461820-16461928)
chr3 (99-171)||(10956524-10956596)
chr3 (22-171)||(10094482-10094631)
chr3 (63-171)||(10201409-10201517)
chr3 (116-173)||(10901363-10901420)
chr3 (94-171)||(11170112-11170189)
chr3 (115-171)||(7606940-7606996)
chr3 (116-171)||(43227999-43228054)
chr3 (115-173)||(6063983-6064041)
chr3 (23-139)||(10949694-10949811)
chr3 (90-171)||(18097374-18097455)
chr3 (21-138)||(11079169-11079287)
chr3 (64-138)||(27762483-27762557)
chr3 (21-139)||(20031763-20031883)
chr3 (21-139)||(5858196-5858314)
chr3 (21-138)||(47883294-47883412)
chr3 (125-171)||(5899424-5899470)
chr3 (22-139)||(10208414-10208531)
chr3 (90-139)||(26720267-26720316)
chr3 (91-140)||(32218834-32218883)
chr3 (61-139)||(25690816-25690894)
chr3 (63-137)||(54188160-54188234)
chr3 (22-104)||(10100505-10100587)
chr3 (92-149)||(11162880-11162937)
chr3 (70-114)||(13511619-13511663)
chr3 (90-138)||(32264532-32264580)
chr3 (90-138)||(48362138-48362186)
chr3 (63-138)||(51727468-51727543)
chr3 (92-138)||(1321161-1321207)
chr3 (63-138)||(29914409-29914484)
chr3 (63-138)||(29963562-29963637)
chr3 (63-138)||(43225827-43225902)
[»] chr5 (23 HSPs)
chr5 (63-171)||(40222381-40222489)
chr5 (90-171)||(659680-659761)
chr5 (63-171)||(6747011-6747119)
chr5 (92-171)||(20504406-20504485)
chr5 (115-171)||(10756927-10756983)
chr5 (115-171)||(15355042-15355098)
chr5 (115-171)||(23667076-23667132)
chr5 (115-171)||(31544765-31544821)
chr5 (92-171)||(31466450-31466529)
chr5 (117-171)||(34477611-34477665)
chr5 (71-171)||(25452113-25452213)
chr5 (1-138)||(42237954-42238091)
chr5 (90-140)||(21947768-21947818)
chr5 (92-138)||(20507955-20508001)
chr5 (1-133)||(17841684-17841816)
chr5 (1-138)||(38881845-38881982)
chr5 (63-138)||(1240078-1240153)
chr5 (63-138)||(6744801-6744876)
chr5 (90-138)||(16775897-16775945)
chr5 (99-138)||(661247-661286)
chr5 (63-139)||(4409796-4409872)
chr5 (63-138)||(10529563-10529638)
chr5 (99-139)||(12556402-12556442)
[»] chr7 (21 HSPs)
chr7 (22-171)||(7074407-7074556)
chr7 (21-173)||(30246607-30246759)
chr7 (63-171)||(25405013-25405121)
chr7 (92-171)||(44281-44360)
chr7 (22-171)||(3320463-3320613)
chr7 (115-171)||(1047480-1047536)
chr7 (115-171)||(22136845-22136901)
chr7 (66-173)||(25409768-25409875)
chr7 (115-171)||(40551872-40551928)
chr7 (21-144)||(7464912-7465035)
chr7 (64-138)||(44144364-44144438)
chr7 (1-55)||(18567446-18567500)
chr7 (1-55)||(31435449-31435503)
chr7 (22-138)||(7069433-7069549)
chr7 (92-140)||(35377-35425)
chr7 (21-138)||(34547256-34547373)
chr7 (71-138)||(42006316-42006383)
chr7 (92-138)||(1049767-1049813)
chr7 (90-140)||(22392290-22392340)
chr7 (63-136)||(40946076-40946149)
chr7 (69-113)||(42057188-42057232)
[»] chr1 (21 HSPs)
chr1 (22-171)||(9526084-9526233)
chr1 (65-171)||(14098437-14098543)
chr1 (90-171)||(28842200-28842281)
chr1 (86-171)||(2393760-2393845)
chr1 (115-171)||(47179395-47179451)
chr1 (115-171)||(51752071-51752127)
chr1 (116-171)||(20302165-20302220)
chr1 (115-171)||(16228203-16228259)
chr1 (86-138)||(13461340-13461392)
chr1 (1-138)||(25133681-25133819)
chr1 (117-171)||(28201926-28201980)
chr1 (90-138)||(15823286-15823334)
chr1 (63-138)||(9521367-9521442)
chr1 (20-138)||(21353739-21353857)
chr1 (90-138)||(28840418-28840466)
chr1 (90-138)||(39462258-39462306)
chr1 (91-135)||(46782864-46782908)
chr1 (63-140)||(2617278-2617355)
chr1 (1-55)||(28207470-28207524)
chr1 (92-138)||(41646681-41646727)
chr1 (92-133)||(28207540-28207581)
[»] chr4 (34 HSPs)
chr4 (69-170)||(16638517-16638618)
chr4 (63-173)||(4884496-4884606)
chr4 (90-171)||(36920078-36920158)
chr4 (37-137)||(47274522-47274622)
chr4 (92-171)||(22044884-22044963)
chr4 (37-138)||(16631068-16631169)
chr4 (21-171)||(15316597-15316747)
chr4 (103-171)||(24880225-24880293)
chr4 (108-171)||(9174654-9174717)
chr4 (115-173)||(11006758-11006816)
chr4 (115-171)||(16932337-16932393)
chr4 (114-171)||(4569690-4569747)
chr4 (115-171)||(22780929-22780985)
chr4 (92-161)||(22048529-22048598)
chr4 (115-171)||(3825089-3825145)
chr4 (21-138)||(25699401-25699519)
chr4 (22-138)||(40636868-40636984)
chr4 (5-139)||(48486112-48486246)
chr4 (1-55)||(52942870-52942924)
chr4 (22-139)||(31300073-31300190)
chr4 (64-139)||(7050728-7050803)
chr4 (63-138)||(11853202-11853277)
chr4 (63-138)||(16489001-16489076)
chr4 (90-133)||(52942959-52943002)
chr4 (63-140)||(15311992-15312069)
chr4 (129-171)||(22801354-22801396)
chr4 (1-55)||(36919989-36920043)
chr4 (1-55)||(36921897-36921951)
chr4 (94-136)||(40091910-40091952)
chr4 (64-105)||(4556511-4556552)
chr4 (63-139)||(18586615-18586691)
chr4 (105-138)||(36922000-36922033)
chr4 (63-138)||(6764654-6764729)
chr4 (63-134)||(8631887-8631958)
[»] chr8 (17 HSPs)
chr8 (21-171)||(3275919-3276070)
chr8 (22-173)||(25684261-25684412)
chr8 (92-171)||(27829060-27829139)
chr8 (22-171)||(4812902-4813051)
chr8 (90-171)||(15072473-15072554)
chr8 (63-171)||(28332251-28332359)
chr8 (115-171)||(18812635-18812691)
chr8 (116-173)||(590431-590488)
chr8 (115-171)||(43081689-43081745)
chr8 (63-173)||(16752977-16753087)
chr8 (63-170)||(28895121-28895228)
chr8 (26-105)||(21033553-21033632)
chr8 (90-138)||(12517517-12517565)
chr8 (92-139)||(27826781-27826828)
chr8 (90-134)||(28252078-28252122)
chr8 (22-138)||(9021522-9021638)
chr8 (63-139)||(29555242-29555318)
[»] chr2 (22 HSPs)
chr2 (21-171)||(30478633-30478783)
chr2 (63-173)||(17943175-17943285)
chr2 (71-173)||(28462777-28462879)
chr2 (63-171)||(2740561-2740669)
chr2 (63-171)||(22712951-22713059)
chr2 (63-171)||(39686603-39686711)
chr2 (22-171)||(20050438-20050587)
chr2 (112-171)||(30262265-30262324)
chr2 (90-171)||(6259306-6259387)
chr2 (115-171)||(36559335-36559391)
chr2 (1-167)||(19502413-19502579)
chr2 (22-139)||(38190648-38190766)
chr2 (90-139)||(40032538-40032587)
chr2 (64-139)||(37171209-37171284)
chr2 (63-140)||(2735856-2735933)
chr2 (22-138)||(12781635-12781751)
chr2 (63-138)||(39679698-39679773)
chr2 (90-141)||(21521186-21521237)
chr2 (70-108)||(9653786-9653824)
chr2 (92-138)||(42064231-42064277)
chr2 (21-102)||(28462706-28462787)
chr2 (63-104)||(45567096-45567137)
[»] scaffold1764 (1 HSPs)
scaffold1764 (63-171)||(1075-1183)
[»] scaffold0339 (1 HSPs)
scaffold0339 (37-137)||(3747-3847)
[»] scaffold0250 (1 HSPs)
scaffold0250 (108-170)||(2597-2659)
[»] scaffold0140 (1 HSPs)
scaffold0140 (115-171)||(24157-24213)
[»] scaffold0025 (1 HSPs)
scaffold0025 (116-173)||(69811-69868)
[»] scaffold0131 (1 HSPs)
scaffold0131 (1-55)||(14851-14905)
[»] scaffold0038 (1 HSPs)
scaffold0038 (66-138)||(41950-42022)
[»] scaffold0256 (1 HSPs)
scaffold0256 (63-138)||(15976-16051)
[»] scaffold0006 (1 HSPs)
scaffold0006 (22-104)||(224527-224609)
[»] scaffold0552 (1 HSPs)
scaffold0552 (63-138)||(1274-1349)
[»] scaffold0377 (1 HSPs)
scaffold0377 (70-114)||(16554-16597)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 15533104 - 15533253
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatcctgatt 121  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||    
T  15533104 catcgtggcacaaaatttccagtgacttgcctcacgaaattcttcaaccatcgtggcacgttgcttctccatcgtggcacgatttctgtagatcctgatt 15533203  T
Q  122 ttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||||||||||||||||||||||||  |||||||||| ||||||||||    
T  15533204 ttaagttaactctcacaattctccaccatgacttcaaataagtgatgatg 15533253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 15541542 - 15541679
Alignment:
Q  1 catcgtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggca 100  Q
    ||||||||||| ||| || | |||||||||| ||||||||||||||| |||||||| |||||||||| ||||| |||||| ||| |||||||||||||||    
T  15541542 catcgtgccacgttgcgatctcatcgtggcatgaaatttccagtgacgtgcctcacgaaattcttcacccatcttggcacattgcttctccatcgtggca 15541641  T
Q  101 cgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  15541642 cgatttctgcaaatcctgattttaagttaactctcaca 15541679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 30729231 - 30729379
Alignment:
Q  2 atcgtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcac 101  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||                     |||||||||    
T  30729231 atcgtgccacgttgtgaccccatcgtggcacgaaatttccagtgacttgcctcacgaaattcttcaacca---------------------tcgtggcac 30729309  T
Q  102 gatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30729310 gatttttgcagatcctgatattaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 30729379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 13883244 - 13883095
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgat 120  Q
    |||||||||||||||||||||||| ||| ||    |   | |||||||||||||||| || || |||||||||||||||||||  |  |||||  |||||    
T  13883244 catcgtggcacgaaatttccagtgtcttcccaggaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactc-cagatttctgat 13883146  T
Q  121 tttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13883145 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 13883095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 31249127 - 31249276
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgat 120  Q
    |||||||||||||||||||||||| ||| ||    |   | |||||||||||||||| || || |||||||||||||||||||  |  |||||  |||||    
T  31249127 catcgtggcacgaaatttccagtgtcttcccaggaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactc-cagatttctgat 31249225  T
Q  121 tttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31249226 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 31249276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 35201739 - 35201888
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgat 120  Q
    |||||||||||||||||||||||| ||| ||    |   | |||||||||||||||| || || |||||||||||||||||||  |  |||||  |||||    
T  35201739 catcgtggcacgaaatttccagtgtcttcccaggaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactc-cagatttctgat 35201837  T
Q  121 tttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35201838 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 35201888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 35209015 - 35209125
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    |||||||||||||||| || || |||||||| ||||||||||  |  |||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  35209015 cttcaaccatcgtggcgcgatgcttctccattgtggcacgatactc-cagatttctgattttaagttaactctcacaattctccaccttgacttcaaatc 35209113  T
Q  162 agtgatgatgtc 173  Q
    ||||||||||||    
T  35209114 agtgatgatgtc 35209125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 26066588 - 26066644
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26066588 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 26066644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 33310977 - 33310921
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33310977 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 33310921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 22344783 - 22344825
Alignment:
Q  129 aactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  22344783 aactctcacaattctccaccttgacttcaaatcagtgatgatg 22344825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 15530613 - 15530661
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||||| |||||||  |||||||||||||||||||||||||||||||    
T  15530613 ccatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 15530661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 26642903 - 26642829
Alignment:
Q  64 ttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagat-cctgattttaagttaactctcaca 138  Q
    |||||| ||||| |||||||  ||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||    
T  26642903 ttcaacaatcgttgcacgttccttctccatcgtggcacg-tttctccagattcctgattttaagttaactctcaca 26642829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 26748869 - 26748795
Alignment:
Q  64 ttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagat-cctgattttaagttaactctcaca 138  Q
    |||||| ||||| |||||||  ||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||    
T  26748869 ttcaacaatcgttgcacgttccttctccatcgtggcacg-tttctccagattcctgattttaagttaactctcaca 26748795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 1230692 - 1230769
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcacaat 140  Q
    ||||||| |||||||||||  | |||||||||||||||||||| |  |||| | |||||||||||||||||||||||||    
T  1230692 cttcaacaatcgtggcacgaagcttctccatcgtggcacgattctc-cagaattctgattttaagttaactctcacaat 1230769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 17695307 - 17695383
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcacaa 139  Q
    ||||||| |||||||| || || |||||||||||||||||||| |  |||| | ||||||||||||||||||||||||    
T  17695307 cttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctc-cagaattctgattttaagttaactctcacaa 17695383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 26064831 - 26064755
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcacaa 139  Q
    ||||||| |||||||||||  | |||||||||||||||||||| |  |||| | ||||||||||||||||||||||||    
T  26064831 cttcaacaatcgtggcacgaagcttctccatcgtggcacgattctc-cagaattctgattttaagttaactctcacaa 26064755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 26084800 - 26084724
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcacaa 139  Q
    ||||||| |||||||||||  | |||||||||||||||||||| |  |||| | ||||||||||||||||||||||||    
T  26084800 cttcaacaatcgtggcacgaagcttctccatcgtggcacgattctc-cagaattctgattttaagttaactctcacaa 26084724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 28241788 - 28241860
Alignment:
Q  66 caaccatcgtggcacgttgtttctccatcgtggcacgatttttgcag-atcctgattttaagttaactctcaca 138  Q
    |||| |||||||||||  | |||||||||||||||||||| || ||| || |||||||||||||||||||||||    
T  28241788 caacaatcgtggcacgaagcttctccatcgtggcacgattctt-cagaattctgattttaagttaactctcaca 28241860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 1072347 - 1072395
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||||  |||||||| |||||| ||||||||||||||||||||||||    
T  1072347 ccatcgtaccacgatttctgcagaacctgattttaagttaactctcaca 1072395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 8995303 - 8995255
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||||| |||||||  | |||||||||||||||||||||||||||||    
T  8995303 ccatcgtgccacgattcctacagatcctgattttaagttaactctcaca 8995255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 9019750 - 9019702
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||||| |||||||  | |||||||||||||||||||||||||||||    
T  9019750 ccatcgtgccacgattcctacagatcctgattttaagttaactctcaca 9019702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 24191620 - 24191668
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    ||||||||||||||||| || | | ||||||||||||||||||||||||    
T  24191620 ccatcgtggcacgatttctgtaaaacctgattttaagttaactctcaca 24191668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 24192717 - 24192765
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    ||||||||||||||||| || | | ||||||||||||||||||||||||    
T  24192717 ccatcgtggcacgatttctgtaaaacctgattttaagttaactctcaca 24192765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 26887679 - 26887754
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 138  Q
    |||||||||||||||| || || |||||||||||||||||| |  | |||| | |||||||||||||||||||||||    
T  26887679 cttcaaccatcgtggcgcgatgcttctccatcgtggcacga-tgctccagatttctgattttaagttaactctcaca 26887754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 30975153 - 30975228
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 138  Q
    |||||||||||||||| || || |||||||||||||||||| |  | |||| | |||||||||||||||||||||||    
T  30975153 cttcaaccatcgtggcgcgatgcttctccatcgtggcacga-tactccagatttctgattttaagttaactctcaca 30975228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 30981592 - 30981667
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 138  Q
    |||||||||||||||| || || |||||||||||||||||| |  | |||| | |||||||||||||||||||||||    
T  30981592 cttcaaccatcgtggcgcgatgcttctccatcgtggcacga-tactccagatttctgattttaagttaactctcaca 30981667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 30987756 - 30987831
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 138  Q
    |||||||||||||||| || || |||||||||||||||||| |  | |||| | |||||||||||||||||||||||    
T  30987756 cttcaaccatcgtggcgcgatgcttctccatcgtggcacga-tactccagatttctgattttaagttaactctcaca 30987831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 19227811 - 19227949
Alignment:
Q  1 catcgtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggca 100  Q
    |||||||||||  || |||||||||||| |||||  ||||||||| ||||||||| ||| |    |  ||||| || |||||||     |||||||| ||    
T  19227811 catcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaattgaaacctccatcatgccacgttgcccaaccatcgtgcca 19227910  T
Q  101 cgatttttgcagatcctgattttaagttaactctcacaa 139  Q
    |||||  |||||||| | |||||||||||||||||||||    
T  19227911 cgattcctgcagatcttaattttaagttaactctcacaa 19227949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 45882796 - 45882659
Alignment:
Q  1 catcgtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggca 100  Q
    ||||||||||| |||  | |||||||||||||||  ||||||||||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||    
T  45882796 catcgtgccacgttgcaatcccatcgtggcacgatttttccagtgacttacttcacgaaaatcttcaaccatcgtggcacgttgtttctccatcgtggca 45882697  T
Q  101 cgatttttgcagatcctgattttaagttaactctcaca 138  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45882696 cgatttttgcagatcctgattttaagttaactctcaca 45882659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 18162522 - 18162405
Alignment:
Q  21 ccatcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatcctgat 120  Q
    ||||||||||||||  ||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||    
T  18162522 ccatcgtggcacgatttttccagtgacttgcttcacgaaaatcttcaaccatcgtggcacgttgcttctttatcgtggcacgatttatgcagatcctgat 18162423  T
Q  121 tttaagttaactctcaca 138  Q
    ||||||||||||||||||    
T  18162422 tttaagttaactctcaca 18162405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 10595424 - 10595576
Alignment:
Q  21 ccatcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctg 118  Q
    ||||||||||||||||||||||||  ||| ||||| ||  || ||||||| |||||||| |  ||||||||||||||||||||||| |  |||||  |||    
T  10595424 ccatcgtggcacgaaatttccagtagctt-cctcagaatcttgcttcaacaatcgtggcgcaatgtttctccatcgtggcacgattctc-cagatttctg 10595521  T
Q  119 attttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatgtc 173  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10595522 attttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgtc 10595576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 54192972 - 54192862
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    ||||||| |||||||| || || |||||||||||||||||||| |  |||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  54192972 cttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctc-cagatttctgattttaagttaactctcacaattctccaccttgacttcaaatc 54192874  T
Q  162 agtgatgatgtc 173  Q
    ||||||||||||    
T  54192873 agtgatgatgtc 54192862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 63 - 171
Target Start/End: Original strand, 47878606 - 47878714
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    ||||||| |||||||| || || |||||||||||||||||||| |  |||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  47878606 cttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctc-cagatttctgattttaagttaactctcacaattctccaccttgacttcaaatc 47878704  T
Q  162 agtgatgatg 171  Q
    ||||||||||    
T  47878705 agtgatgatg 47878714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 171
Target Start/End: Original strand, 35918411 - 35918519
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatca 162  Q
    ||||||| |||||||||||  | |||||||||||||||||||| |     || |||||||||||||||||||||||||||||||||| ||||||||||||    
T  35918411 cttcaacaatcgtggcacgaagcttctccatcgtggcacgattctccataattctgattttaagttaactctcacaattctccaccttgacttcaaatca 35918510  T
Q  163 gtgatgatg 171  Q
    |||||||||    
T  35918511 gtgatgatg 35918519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 171
Target Start/End: Original strand, 4308743 - 4308851
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    ||||||| |||||||||||  | |||| ||||||||||||||| |  |||| | |||||||||||||||||||||||||||||||||| |||||||||||    
T  4308743 cttcaacaatcgtggcacgaagcttcttcatcgtggcacgattctc-cagaattctgattttaagttaactctcacaattctccaccttgacttcaaatc 4308841  T
Q  162 agtgatgatg 171  Q
    ||||||||||    
T  4308842 agtgatgatg 4308851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 16461928 - 16461820
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    ||||||| |||||||| || || |||||||||||||||||||  |  |||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  16461928 cttcaacaatcgtggcgcgatgcttctccatcgtggcacgatactc-cagatttctgattttaagttaactctcacaattctccaccttgacttcaaatc 16461830  T
Q  162 agtgatgatg 171  Q
    ||||||||||    
T  16461829 agtgatgatg 16461820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 10956524 - 10956596
Alignment:
Q  99 cacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||||  |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  10956524 cacgattcctgcagatcctgattttaagttaactctcacaattatccaccttgacttcaaatcagtgatgatg 10956596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 10094482 - 10094631
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgat 120  Q
    |||||||||||||||||||||||| ||| ||    |   | |||||||||||||| | || || ||||||||||||| |||||  |  |||||  |||||    
T  10094482 catcgtggcacgaaatttccagtgtcttcccaggaatcttgcttcaaccatcgtgacgcgatgcttctccatcgtggaacgatactc-cagatttctgat 10094580  T
Q  121 tttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10094581 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 10094631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 171
Target Start/End: Original strand, 10201409 - 10201517
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    |||||||||||||||| || || ||||||||||||| |||||  |  |||||  ||||||||||||||| |||||||||||||||||| |||||||||||    
T  10201409 cttcaaccatcgtggcgcgatgcttctccatcgtggaacgatactc-cagatttctgattttaagttaaatctcacaattctccaccttgacttcaaatc 10201507  T
Q  162 agtgatgatg 171  Q
    ||||||||||    
T  10201508 agtgatgatg 10201517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 10901420 - 10901363
Alignment:
Q  116 ctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatgtc 173  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10901420 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgtc 10901363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 11170189 - 11170112
Alignment:
Q  94 cgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||| |||||||  |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  11170189 cgtgccacgattcctgcagatcttgattttaagttaactctcacaattctccaccttgacttcaaatcaatgatgatg 11170112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 7606940 - 7606996
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7606940 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 7606996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 43228054 - 43227999
Alignment:
Q  116 ctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43228054 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 43227999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 6063983 - 6064041
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatgtc 173  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  6063983 cctgattttaagttaattctcacaattctccaccttgacttcaaatcagtgatgatgtc 6064041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 10949694 - 10949811
Alignment:
Q  23 atcgtggcacgaaatttccagtgacttgcctcacaaaattctt-caaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgat 120  Q
    ||||||||||||| ||||||||||||||| |||  |  || || |||| |||||||||||||| ||||||||||||||||| ||| | |||| |||||||    
T  10949694 atcgtggcacgaattttccagtgacttgcttcaggatcttgtttcaacaatcgtggcacgttgcttctccatcgtggcacg-tttctccagattcctgat 10949792  T
Q  121 tttaagttaactctcacaa 139  Q
    |||||||||||||||||||    
T  10949793 tttaagttaactctcacaa 10949811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 18097374 - 18097455
Alignment:
Q  90 ccatcgtggcacgatttttgcagat-cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||||| ||||||||| |||||  ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  18097374 ccatcgtgccacgatttt-gcagaaacctgattttaagttaactctcacaattctccaccttgactttaaatcagggatgatg 18097455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 11079287 - 11079169
Alignment:
Q  21 ccatcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaacca-tcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctg 118  Q
    ||||||||||||||| ||||||||||||||| |||  |  || || || || ||||||||||||| ||||||||||||||||| ||| | |||| | |||    
T  11079287 ccatcgtggcacgaattttccagtgacttgcttcaggatcttttttaaacaatcgtggcacgttgcttctccatcgtggcacg-tttctccagattactg 11079189  T
Q  119 attttaagttaactctcaca 138  Q
    ||||||||||||||||||||    
T  11079188 attttaagttaactctcaca 11079169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 27762483 - 27762557
Alignment:
Q  64 ttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 138  Q
    |||||| |||||||||||||| ||||||||||||||||| ||| | |||| |||||||||||||||||||||||||    
T  27762483 ttcaacaatcgtggcacgttgcttctccatcgtggcacg-tttcttcagattcctgattttaagttaactctcaca 27762557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 20031763 - 20031883
Alignment:
Q  21 ccatcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttg-tttctccatcgtggcacgatttttgcagatc-ct 117  Q
    ||||||||||||||  ||||||||||||| | ||| ||  || ||||||| |||||||||| ||| |||||||||||||||||| ||| | |||||  ||    
T  20031763 ccatcgtggcacgatttttccagtgacttccttcagaatcttgcttcaacaatcgtggcacattgctttctccatcgtggcacg-tttctccagatttct 20031861  T
Q  118 gattttaagttaactctcacaa 139  Q
    ||||||||||||||||||||||    
T  20031862 gattttaagttaactctcacaa 20031883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 5858314 - 5858196
Alignment:
Q  21 ccatcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctg 118  Q
    ||||||||||||||||||||||||  ||  ||||| ||  || ||||||| |||||||| || || |||||||||||||||||| || | |||| |||||    
T  5858314 ccatcgtggcacgaaatttccagtagctc-cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacga-ttctccagattcctg 5858217  T
Q  119 attttaagttaactctcacaa 139  Q
    |||||||||||||||||||||    
T  5858216 attttaagttaactctcacaa 5858196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 47883294 - 47883412
Alignment:
Q  21 ccatcgtggcacgaaatttccagtgacttgcctcacaaaattctt-caaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctg 118  Q
    |||| |||||||||| ||||||||||||||| |||  |  || || |||| |||||| ||||||| ||||||||||||||||| ||| | || | |||||    
T  47883294 ccattgtggcacgaattttccagtgacttgcatcaggatcttgtttcaacaatcgtgacacgttgcttctccatcgtggcacg-tttctccaaattcctg 47883392  T
Q  119 attttaagttaactctcaca 138  Q
    ||||||||||||||||||||    
T  47883393 attttaagttaactctcaca 47883412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 5899470 - 5899424
Alignment:
Q  125 agttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  5899470 agttaactctcacaattctccaccttgacttcaaatcagtgacgatg 5899424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 10208414 - 10208531
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgat 120  Q
    |||||||||||||||||||||||| ||| ||  | |   | |||||||||||||||| || || |||||||||||||||||| |  | |||| | |||||    
T  10208414 catcgtggcacgaaatttccagtgtcttcccagaaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacga-tactccagatttctgat 10208512  T
Q  121 tttaagttaactctcacaa 139  Q
    |||||||||||||||||||    
T  10208513 tttaagttaactctcacaa 10208531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 26720316 - 26720267
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcacaa 139  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||||||    
T  26720316 ccatcgtgccacgattcctgcagatcctgattttaagttaactctcacaa 26720267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 32218883 - 32218834
Alignment:
Q  91 catcgtggcacgatttttgcagatcctgattttaagttaactctcacaat 140  Q
    ||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  32218883 catcgtgccacgatttctgcagaacctgattttaagttaactctcacaat 32218834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 25690816 - 25690894
Alignment:
Q  61 ttcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcag-atcctgattttaagttaactctcacaa 139  Q
    ||||||||| |||||||||||  | ||||||||||||||||||||  | ||| || ||||||||||||||||||||||||    
T  25690816 ttcttcaacaatcgtggcacgaagcttctccatcgtggcacgattcat-cagaattctgattttaagttaactctcacaa 25690894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 54188234 - 54188160
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcac 137  Q
    ||||||| |||||||| || || |||||||||||||||||||| || |||| | ||||||||||||||||||||||    
T  54188234 cttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctt-cagatttctgattttaagttaactctcac 54188160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 10100505 - 10100587
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgat 104  Q
    |||||||||||||||||||||||| ||| ||  | |   | |||||||||||||||| || || |||||||||||||||||||    
T  10100505 catcgtggcacgaaatttccagtgtcttcccagaaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgat 10100587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 11162937 - 11162880
Alignment:
Q  92 atcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacct 149  Q
    |||||| |||||||  |||||||| |||||||||||||||||||||| || |||||||    
T  11162937 atcgtgccacgattcctgcagatcttgattttaagttaactctcacagttttccacct 11162880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 13511619 - 13511663
Alignment:
Q  70 catcgtggcacgttgtttctccatcgtggcacgatttttgcagat 114  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||    
T  13511619 catcgtggcacgttgttttcccatcgtggcacgatttttccagat 13511663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 32264532 - 32264580
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||||| |||||||| |||| | ||||||||||||||||||||||||    
T  32264532 ccatcgtgccacgatttctgcaaaacctgattttaagttaactctcaca 32264580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 48362138 - 48362186
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||||| |||||||| | |||| ||||||||||||||||||||||||    
T  48362138 ccatcgtgccacgatttctacagaacctgattttaagttaactctcaca 48362186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 51727468 - 51727543
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 138  Q
    ||||||| |||||||||||  | |||||||||||||||||||| |  |||| | |||||||||||||||||||||||    
T  51727468 cttcaacaatcgtggcacgaagcttctccatcgtggcacgattctc-cagaattctgattttaagttaactctcaca 51727543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 1321207 - 1321161
Alignment:
Q  92 atcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||| |||||||  |||||||| ||||||||||||||||||||||    
T  1321207 atcgtgccacgattcctgcagatcttgattttaagttaactctcaca 1321161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 29914409 - 29914484
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcaca 138  Q
    ||||||| |||||||| || || |||||||||||||||||||| |  |||||  |||||||||||||||||| ||||    
T  29914409 cttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctc-cagatttctgattttaagttaactcccaca 29914484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 29963562 - 29963637
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcaca 138  Q
    ||||||| |||||||| || || |||||||||||||||||||| |  |||||  |||||||||||||||||| ||||    
T  29963562 cttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctc-cagatttctgattttaagttaactcccaca 29963637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 43225902 - 43225827
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 138  Q
    ||||||| ||||| |||||  | |||||||||||||||||||| |  |||| | |||||||||||||||||||||||    
T  43225902 cttcaacaatcgtagcacgaagcttctccatcgtggcacgattctc-cagaattctgattttaagttaactctcaca 43225827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 40222489 - 40222381
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    ||||||| |||||||||||||| |||||||||||||||||||| |  |||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  40222489 cttcaacaatcgtggcacgttgcttctccatcgtggcacgattctc-cagatttctgattttaagttaactctcacaattctccaccttgacttcaaatc 40222391  T
Q  162 agtgatgatg 171  Q
    ||||||||||    
T  40222390 agtgatgatg 40222381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 659761 - 659680
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  659761 ccatcgtgccacgatttctgcagaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagggatgatg 659680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 6747119 - 6747011
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    ||||||| |||||||||||  | |||||||||||||||||||| |  |||| | |||||||||||||||||||||||||||||||||| |||||||||||    
T  6747119 cttcaacaatcgtggcacgaagcttctccatcgtggcacgattctc-cagaattctgattttaagttaactctcacaattctccaccttgacttcaaatc 6747021  T
Q  162 agtgatgatg 171  Q
    ||||||||||    
T  6747020 agtgatgatg 6747011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 20504406 - 20504485
Alignment:
Q  92 atcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||| |||||||| |||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  20504406 atcgtgccacgatttctgcagaacctgattttaagttaactctcacaattctccacattgacttcaaatcagtgatgatg 20504485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 10756983 - 10756927
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10756983 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 10756927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 15355042 - 15355098
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15355042 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 15355098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 23667132 - 23667076
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23667132 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 23667076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 31544821 - 31544765
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31544821 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 31544765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 31466450 - 31466529
Alignment:
Q  92 atcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||| |||||||  |||| | ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  31466450 atcgtgccacgattcctgcaaaacctgattttaagttaactctcacaattctccacattgacttcaaatcagtgatgatg 31466529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 34477611 - 34477665
Alignment:
Q  117 tgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34477611 tgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 34477665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 171
Target Start/End: Complemental strand, 25452213 - 25452113
Alignment:
Q  71 atcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatga 169  Q
    |||||||| || || |||||||||||||||||||| |  || ||  || ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25452213 atcgtggcgcgatgcttctccatcgtggcacgattctc-catatttctaattttaagttaactctcacaattctccaccttgacttcaaatcagtgatga 25452115  T
Q  170 tg 171  Q
    ||    
T  25452114 tg 25452113  T

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Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 42238091 - 42237954
Alignment:
Q  1 catcgtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggc 99  Q
    ||||||||||| ||| ||   |||||||||||||  |||||||||||| || ||| ||  || ||||||| |||||||||||||| ||||||||||||||    
T  42238091 catcgtgccacgttgcgatttcatcgtggcacgatttttccagtgact-gcttcaaaatcttgcttcaacaatcgtggcacgttgcttctccatcgtggc 42237993  T
Q  100 acgatttttgcagatc-ctgattttaagttaactctcaca 138  Q
    |||||| |  |||||  |||||||||||||||||||||||    
T  42237992 acgattctc-cagatttctgattttaagttaactctcaca 42237954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 21947818 - 21947768
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcacaat 140  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  21947818 ccatcgtgccacgatttctgcagaacctgattttaagttaactctcacaat 21947768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 20507955 - 20508001
Alignment:
Q  92 atcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||| |||||||| |||||| ||||||||||||||||||||||||    
T  20507955 atcgtgccacgatttctgcagaacctgattttaagttaactctcaca 20508001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 17841684 - 17841816
Alignment:
Q  1 catcgtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggca 100  Q
    ||||||||||| || |||  ||||||||||||||| |||||| |||||||| |||  |  || || ||| |||||| || |||| |||||||||||| ||    
T  17841684 catcgtgccacgttatgattccatcgtggcacgaattttccaatgacttgcttcaggatcttgtttaacaatcgtgacatgttgcttctccatcgtgaca 17841783  T
Q  101 cgatttttgcaga-tcctgattttaagttaactc 133  Q
    || ||| | |||| |||||||||||| |||||||    
T  17841784 cg-tttctccagattcctgattttaaattaactc 17841816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 38881982 - 38881845
Alignment:
Q  1 catcgtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggca 100  Q
    |||||||||||  || |||||||||||| |||||  ||||||||| ||||||||| ||| |    |  |||||||| |||||||     | |||||| ||    
T  38881982 catcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctcaaaaactaaaacctccatcgtgccacgttgcccagcaatcgtgcca 38881883  T
Q  101 cgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||  |||||||| ||||||||||||||||||||||    
T  38881882 cgattcctgcagatcttgattttaagttaactctcaca 38881845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 1240153 - 1240078
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 138  Q
    ||||||| |||||||||||  | |||||||||||||||||||| |  |||| | |||||||||||||||||||||||    
T  1240153 cttcaacaatcgtggcacgaagcttctccatcgtggcacgattctc-cagaattctgattttaagttaactctcaca 1240078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 6744876 - 6744801
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 138  Q
    ||||||| |||||||||||  |||||||||||||||||||||| |  |||| | |||||||||| ||||||||||||    
T  6744876 cttcaacaatcgtggcacgaagtttctccatcgtggcacgattctc-cagaattctgattttaaattaactctcaca 6744801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 16775945 - 16775897
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||||| |||||||  ||||||||||||||||||||||| |||||||    
T  16775945 ccatcgtgccacgattcctgcagatcctgattttaagttaattctcaca 16775897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 661247 - 661286
Alignment:
Q  99 cacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  661247 cacgatttctgcagaacctgattttaagttaactctcaca 661286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 4409872 - 4409796
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaa 139  Q
    ||||||| |||||||||||  | |||| ||||||||||||||| || |||| | ||||||||||||||||| ||||||    
T  4409872 cttcaacaatcgtggcacgaagcttcttcatcgtggcacgattctt-cagaactctgattttaagttaactttcacaa 4409796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 10529563 - 10529638
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 138  Q
    ||||||| |||||||||||  | ||||| |||||||||||||| |  |||| | |||||||||||||||||||||||    
T  10529563 cttcaacaatcgtggcacgaagcttctcgatcgtggcacgattctc-cagaattctgattttaagttaactctcaca 10529638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 12556402 - 12556442
Alignment:
Q  99 cacgatttttgcagatcctgattttaagttaactctcacaa 139  Q
    |||||||| |||||| ||||||||||| |||||||||||||    
T  12556402 cacgatttctgcagaacctgattttaaattaactctcacaa 12556442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 7074556 - 7074407
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgat 120  Q
    |||||||||||||||||||||||| ||| ||    |   | ||||||||||||||||||| || |||||||||||||||||||  |  |||||  |||||    
T  7074556 catcgtggcacgaaatttccagtgtcttcccaggaatcttgcttcaaccatcgtggcacgatgcttctccatcgtggcacgatactc-cagatttctgat 7074458  T
Q  121 tttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7074457 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 7074407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 30246759 - 30246607
Alignment:
Q  21 ccatcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctg 118  Q
    |||||||||||||||||||||| |  ||| ||||| ||  || ||||||| |||||||| |  || |||||||||||||||||||| |  |||||  |||    
T  30246759 ccatcgtggcacgaaatttccaatagctt-cctcagaatcttgcttcaacaatcgtggcgcaatgcttctccatcgtggcacgattctc-cagatttctg 30246662  T
Q  119 attttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatgtc 173  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30246661 attttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgtc 30246607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 25405121 - 25405013
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    |||||||||||||||| || || |||||||||||||||||||  |  |||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  25405121 cttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactc-cagatttctgattttaagttaactctcacaattctccaccttgacttcaaatc 25405023  T
Q  162 agtgatgatg 171  Q
    ||||||||||    
T  25405022 agtgatgatg 25405013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 44360 - 44281
Alignment:
Q  92 atcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||| |||||||  |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  44360 atcgtgccacgattcctgcagatcttgattttaagttaactctcacaattctccaccttgacttcaaatcaatgatgatg 44281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 3320463 - 3320613
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgat 120  Q
    |||||||||||||||||||||||| ||| ||    |   | |||||||||||||||| || || |||||||||||||||||||  |  |||||  |||||    
T  3320463 catcgtggcacgaaatttccagtggcttcccaggaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctc-cagatttctgat 3320561  T
Q  121 tttaagttaact-ctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  3320562 tttaagttaacttctcacaattctccaccttgacttcaaatcagtgatgatg 3320613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 1047480 - 1047536
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1047480 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 1047536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 22136901 - 22136845
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22136901 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 22136845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 25409875 - 25409768
Alignment:
Q  66 caaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatcagt 164  Q
    |||| |||||||| || || |||||||||||||||||||| |  |||||  ||||||||||||||||| | |||||||||||||| ||||||||||||||    
T  25409875 caacaatcgtggcgcgatgcttctccatcgtggcacgattctc-cagatttctgattttaagttaacttttacaattctccaccttgacttcaaatcagt 25409777  T
Q  165 gatgatgtc 173  Q
    |||||||||    
T  25409776 gatgatgtc 25409768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 40551928 - 40551872
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40551928 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 40551872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 7464912 - 7465035
Alignment:
Q  21 ccatcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctg 118  Q
    ||||||||||||||||||||||||  ||| ||||| ||  || ||||||| |||||||| || || |||||||||||||||||||| |  |||| | |||    
T  7464912 ccatcgtggcacgaaatttccagtagctt-cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctc-cagaattctg 7465009  T
Q  119 attttaagttaactctcacaattctc 144  Q
    ||||||||||||||||||||||||||    
T  7465010 attttaagttaactctcacaattctc 7465035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 44144364 - 44144438
Alignment:
Q  64 ttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 138  Q
    |||||| |||||||||||||||||||||||||||||||| ||| |  ||| |||||||||||||||||||||||||    
T  44144364 ttcaacaatcgtggcacgttgtttctccatcgtggcacg-tttctctagattcctgattttaagttaactctcaca 44144438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 18567500 - 18567446
Alignment:
Q  1 catcgtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctca 55  Q
    ||||||||||  |||||||||||||||| |||||||  |||||||||||||||||    
T  18567500 catcgtgccaagttgtgaccccatcgtgccacgaaaaatccagtgacttgcctca 18567446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 31435449 - 31435503
Alignment:
Q  1 catcgtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctca 55  Q
    ||||||||||  |||||||||||||||| |||||||  |||||||||||||||||    
T  31435449 catcgtgccaagttgtgaccccatcgtgccacgaaaaatccagtgacttgcctca 31435503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 7069549 - 7069433
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgat 120  Q
    |||||||||||||||||||||||| ||| ||    |   | |||||||||||||||| || || |||||||||||||||||| |  | |||| | |||||    
T  7069549 catcgtggcacgaaatttccagtgtcttcccaggaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacga-tactccagatttctgat 7069451  T
Q  121 tttaagttaactctcaca 138  Q
    ||||||||||||||||||    
T  7069450 tttaagttaactctcaca 7069433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 35425 - 35377
Alignment:
Q  92 atcgtggcacgatttttgcagatcctgattttaagttaactctcacaat 140  Q
    |||||| |||||||  |||||||| ||||||||||||||||||||||||    
T  35425 atcgtgccacgattcctgcagatcttgattttaagttaactctcacaat 35377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 34547256 - 34547373
Alignment:
Q  21 ccatcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctg 118  Q
    |||||||||||||||| |||||||  ||| ||||| ||  || ||||||| |||||||| || || |||||||||||| ||||||| |  |||||  |||    
T  34547256 ccatcgtggcacgaaaattccagtagctt-cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtgacacgattctc-cagatttctg 34547353  T
Q  119 attttaagttaactctcaca 138  Q
    ||||||||||||||||||||    
T  34547354 attttaagttaactctcaca 34547373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 42006383 - 42006316
Alignment:
Q  71 atcgtggcacgttgtttctccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||||||||||  ||||||| ||||  ||||||| | || | ||||||||||||||||||||||||    
T  42006383 atcgtggcacgttacttctccaacgtgagacgatttctccaaaacctgattttaagttaactctcaca 42006316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 1049767 - 1049813
Alignment:
Q  92 atcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||| |||||||  |||||||| ||||||||||||||||||||||    
T  1049767 atcgtgccacgattcctgcagatcttgattttaagttaactctcaca 1049813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 22392340 - 22392290
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcacaat 140  Q
    ||||||||||||||||| | || | ||||||||||| ||||||||||||||    
T  22392340 ccatcgtggcacgatttctccataacctgattttaaattaactctcacaat 22392290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 40946149 - 40946076
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcag-atcctgattttaagttaactctca 136  Q
    ||||||| |||||||||||  | |||| ||||||||||||||| || ||| || |||||||||||||||||||||    
T  40946149 cttcaacaatcgtggcacgaagcttcttcatcgtggcacgattctt-cagaattctgattttaagttaactctca 40946076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 42057232 - 42057188
Alignment:
Q  69 ccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga 113  Q
    |||||||||||||||| ||  ||||||||||||||||||| ||||    
T  42057232 ccatcgtggcacgttggtttcccatcgtggcacgatttttccaga 42057188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 9526233 - 9526084
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgat 120  Q
    |||||||||||||||||||||||| ||| ||  | |   | |||||||||||||||| || || |||||||||||||||||||  |  |||||  |||||    
T  9526233 catcgtggcacgaaatttccagtgtcttcccagaaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctc-cagatttctgat 9526135  T
Q  121 tttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9526134 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 9526084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 14098437 - 14098543
Alignment:
Q  65 tcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagt 164  Q
    |||||||||||| |||| || |   |||||||| |||||||| ||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14098437 tcaaccatcgtgccacggtgctcagccatcgtgccacgatttctgcagaatctgattttaagttaactctcacaattctccaccttgacttcaaatcagt 14098536  T
Q  165 gatgatg 171  Q
    |||||||    
T  14098537 gatgatg 14098543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 28842281 - 28842200
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||||| |||||||  | ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  28842281 ccatcgtgccacgattcctacagatcctgattttaagttaactttcacaattctccaccttgacttcaaatcagtgatgatg 28842200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 2393760 - 2393845
Alignment:
Q  86 ttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||||||||||||||||| |  |||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2393760 ttctccatcgtggcacgattctc-cagatttctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 2393845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 47179451 - 47179395
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47179451 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 47179395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 51752127 - 51752071
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51752127 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 51752071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 20302220 - 20302165
Alignment:
Q  116 ctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20302220 ctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 20302165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 16228259 - 16228203
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  16228259 cctgattttaagttaactcttacaattctccaccttgacttcaaatcagtgatgatg 16228203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 13461340 - 13461392
Alignment:
Q  86 ttctccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  13461340 ttctccatcgtggcacgattcctgcagatcctgattttaagttaactctcaca 13461392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 25133819 - 25133681
Alignment:
Q  1 catcgtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggc 99  Q
    ||||||||||| || |||  ||||||||||||||  |||||| |||||||| | |  |  || ||||||| |||||||||||||| |||||||||||| |    
T  25133819 catcgtgccacgttatgattccatcgtggcacgatttttccaatgacttgctttaggatcttgcttcaacaatcgtggcacgttgcttctccatcgtgac 25133720  T
Q  100 acgatttttgcaga-tcctgattttaagttaactctcaca 138  Q
    ||| ||| | |||| |||||||||||||||||||||||||    
T  25133719 acg-tttctccagattcctgattttaagttaactctcaca 25133681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 28201926 - 28201980
Alignment:
Q  117 tgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||| || || ||||||| |||||||    
T  28201926 tgattttaagttaactctcacaattctccaccttgattttaaatcagcgatgatg 28201980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 15823334 - 15823286
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||||| |||||||  |||||||||||||||||||||||||||||||    
T  15823334 ccatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 15823286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 9521442 - 9521367
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcaca 138  Q
    ||||||| |||||||| || || |||||||||||||||||||| |  |||||  |||||||||||||||||||||||    
T  9521442 cttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctc-cagatttctgattttaagttaactctcaca 9521367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 21353739 - 21353857
Alignment:
Q  20 cccatcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ct 117  Q
    ||||||||||||||||| |||||||  ||| ||||| ||  || ||||||| |||||||| || || |||||||||||||||||||| |  |||||  ||    
T  21353739 cccatcgtggcacgaaaattccagtagctt-cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctc-cagatttct 21353836  T
Q  118 gattttaagttaactctcaca 138  Q
    |||||||||||||||| ||||    
T  21353837 gattttaagttaactcccaca 21353857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 28840466 - 28840418
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||||| |||||||  ||||||||||||||||||||||||| |||||    
T  28840466 ccatcgtgccacgattcctgcagatcctgattttaagttaactttcaca 28840418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 39462306 - 39462258
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||| ||| |||||||| |||||| ||||||||||||||||||||||||    
T  39462306 ccattgtgtcacgatttctgcagaacctgattttaagttaactctcaca 39462258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 46782908 - 46782864
Alignment:
Q  91 catcgtggcacgatttttgcagatcctgattttaagttaactctc 135  Q
    |||||||||||||||||| |||||| ||||| |||||||||||||    
T  46782908 catcgtggcacgattttttcagatcttgattataagttaactctc 46782864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 2617355 - 2617278
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcacaat 140  Q
    ||||||| |||||||||||    |||||||||||||||||||| |  |||| | |||||||||||||||||||||||||    
T  2617355 cttcaacaatcgtggcacgaaacttctccatcgtggcacgattctc-cagaattctgattttaagttaactctcacaat 2617278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 28207470 - 28207524
Alignment:
Q  1 catcgtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctca 55  Q
    ||||||||||| |||||||||||||||| || ||||  |||| ||||||||||||    
T  28207470 catcgtgccacgttgtgaccccatcgtgccatgaaaaatccaatgacttgcctca 28207524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 41646727 - 41646681
Alignment:
Q  92 atcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||| |||||||| |||||| | ||||||||||||||||||||||    
T  41646727 atcgtgccacgatttctgcagaacatgattttaagttaactctcaca 41646681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 28207540 - 28207581
Alignment:
Q  92 atcgtggcacgatttttgcagatcctgattttaagttaactc 133  Q
    |||||| |||||||| |||||| |||||||||||||||||||    
T  28207540 atcgtgccacgatttctgcagaacctgattttaagttaactc 28207581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 16638618 - 16638517
Alignment:
Q  69 ccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatg 168  Q
    |||| ||||||||||| ||||  ||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||| |||||||||| |||||||    
T  16638618 ccattgtggcacgttgcttctgaatcgtggcacgatttttccagaacctgattttatgttaactctcacaattctccaccttgacttcaaatgagtgatg 16638519  T
Q  169 at 170  Q
    ||    
T  16638518 at 16638517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 4884606 - 4884496
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    ||||||| |||||| ||||||| |||||||||||||||||||| |  |||||  |||||||||||||||||||||||||||||||| | |||||||||||    
T  4884606 cttcaacaatcgtgacacgttgcttctccatcgtggcacgattctc-cagatttctgattttaagttaactctcacaattctccacattgacttcaaatc 4884508  T
Q  162 agtgatgatgtc 173  Q
    ||||||||||||    
T  4884507 agtgatgatgtc 4884496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 36920078 - 36920158
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36920078 ccatcgtgccacgatttt-gcagaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 36920158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 47274622 - 47274522
Alignment:
Q  37 tttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatcctgattttaagttaactctca 136  Q
    |||||| |||||||| |||| ||| |||||||||||| | |||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||||    
T  47274622 tttccaatgacttgcttcacgaaaatcttcaaccatcatagcacgttgtttctccatcgtggcacgatttctacatatcctaattttaagttaactctca 47274523  T
Q  137 c 137  Q
    |    
T  47274522 c 47274522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 22044884 - 22044963
Alignment:
Q  92 atcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||| |||||||  |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22044884 atcgtgccacgattcctgcagatcttgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 22044963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 16631169 - 16631068
Alignment:
Q  37 tttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatcctgattttaagttaactctca 136  Q
    |||| |||||||||| |||  || ||||||||| |||||||||||||| ||||  ||||||||||||||||| |||| ||||||||||||||||||||||    
T  16631169 tttctagtgacttgcttcaggaacttcttcaacaatcgtggcacgttgcttctgaatcgtggcacgatttttccagaacctgattttaagttaactctca 16631070  T
Q  137 ca 138  Q
    ||    
T  16631069 ca 16631068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 15316747 - 15316597
Alignment:
Q  21 ccatcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctg 118  Q
    |||||||||||||||||||| |||  ||| ||||| ||  || ||||||| |||||| | || || |||||||||||||||||||| |  |||||  |||    
T  15316747 ccatcgtggcacgaaatttctagtagctt-cctcagaatcttgcttcaacaatcgtgacgcgatgcttctccatcgtggcacgattctc-cagatttctg 15316650  T
Q  119 attttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  15316649 attttaagttaactctcacaattcttcaccttgacttcaaatcagtgatgatg 15316597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 24880293 - 24880225
Alignment:
Q  103 atttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  24880293 atttttgcagaacctgattttaagttaactttcacaattctccaccttgacttcaaatcagtgatgatg 24880225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 9174654 - 9174717
Alignment:
Q  108 tgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9174654 tgcagaacctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 9174717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 11006758 - 11006816
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatgtc 173  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11006758 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgtc 11006816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 16932337 - 16932393
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16932337 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 16932393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 4569747 - 4569690
Alignment:
Q  114 tcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  4569747 tcctgattttaagttaactctcacaattctccaccttgacttcaaattagtgatgatg 4569690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 22780929 - 22780985
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  22780929 cctgattttaagttaactctcacaattctccaccttgacttcaaattagtgatgatg 22780985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 22048529 - 22048598
Alignment:
Q  92 atcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    |||||| ||||||| |||| |||| |||||||||||||||||||||||||||||| || |||||||||||    
T  22048529 atcgtgccacgattcttgcggatcttgattttaagttaactctcacaattctccaacttgacttcaaatc 22048598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 3825089 - 3825145
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||| || |||| |||||||||||||||||||||    
T  3825089 cctgattttaagttaactctcacaattgtcaaccttgacttcaaatcagtgatgatg 3825145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 25699519 - 25699401
Alignment:
Q  21 ccatcgtggcacgaaatttccagtgacttgcctcacaaaattctt-caaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctg 118  Q
    |||||||| |||||| ||||||||||||||| |||  |  || || |||| |||||||||||||| |||||||||||||||| |||| | | || |||||    
T  25699519 ccatcgtgtcacgaattttccagtgacttgcttcaggatcttgtttcaacaatcgtggcacgttgcttctccatcgtggcac-atttcttctgattcctg 25699421  T
Q  119 attttaagttaactctcaca 138  Q
    ||||||||||||||||||||    
T  25699420 attttaagttaactctcaca 25699401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 40636984 - 40636868
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatcctgat 120  Q
    |||||||||||||||||||||||  ||| ||||| ||  || ||||||| |||||||| || || |||||||||||||||||||| |   | || |||||    
T  40636984 catcgtggcacgaaatttccagtagctt-cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctccaaaattctgat 40636886  T
Q  121 tttaagttaactctcaca 138  Q
    ||||||||||||||||||    
T  40636885 tttaagttaactctcaca 40636868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 48486246 - 48486112
Alignment:
Q  5 gtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctcacaa---aattcttcaaccatcgtggcacgttgtttctccatcgtggcac 101  Q
    ||||||| |||||||||||||||| |||||||  ||||||||||||||||| ||   ||  || ||   |||||| ||||||| |   |||||||| |||    
T  48486246 gtgccacattgtgaccccatcgtgccacgaaaaatccagtgacttgcctcaaaactgaaacctcca---atcgtgccacgttgctcagccatcgtgccac 48486150  T
Q  102 gatttttgcagatcctgattttaagttaactctcacaa 139  Q
    ||||| |||||  |||||||||||||||||||||||||    
T  48486149 gatttctgcaggacctgattttaagttaactctcacaa 48486112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 52942870 - 52942924
Alignment:
Q  1 catcgtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctca 55  Q
    ||||||||||| |||||||||||||||| |||||||| | |||||||||||||||    
T  52942870 catcgtgccacgttgtgaccccatcgtgccacgaaatattcagtgacttgcctca 52942924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 31300190 - 31300073
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctga 119  Q
    |||||||||||||||||||||||  ||| ||||| ||  || ||||||| ||||||||  | || |||||||||||||||||||| |  |||||  ||||    
T  31300190 catcgtggcacgaaatttccagtagctt-cctcagaatcttgcttcaacaatcgtggcgtgatgcttctccatcgtggcacgattctc-cagatttctga 31300093  T
Q  120 ttttaagttaactctcacaa 139  Q
    ||||||||||||||||||||    
T  31300092 ttttaagttaactctcacaa 31300073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 7050728 - 7050803
Alignment:
Q  64 ttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcacaa 139  Q
    |||||| |||||||||||||| ||||| ||||||||||| ||| | |||| ||||||||||||| | ||||||||||    
T  7050728 ttcaacaatcgtggcacgttgcttctctatcgtggcacg-tttctccagattcctgattttaagctgactctcacaa 7050803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 11853277 - 11853202
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 138  Q
    |||||||||||||||| || || |||||||||||||||||| |  | |||| | |||||||||||||||||||||||    
T  11853277 cttcaaccatcgtggcgcgatgcttctccatcgtggcacga-tactccagatttctgattttaagttaactctcaca 11853202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 16489076 - 16489001
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcaca 138  Q
    ||||||| |||||||| || || |||||||||||||||||||| |  |||||  |||||||||||||||||||||||    
T  16489076 cttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctc-cagatttctgattttaagttaactctcaca 16489001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 52942959 - 52943002
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactc 133  Q
    |||||||| ||||||||||||| | |||||||||||||||||||    
T  52942959 ccatcgtgccacgatttttgcaaaacctgattttaagttaactc 52943002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 15312069 - 15311992
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaat 140  Q
    ||||||| |||||||  || || |||||||||||||||||||| |  |||||  |||||||||||||||||||||||||    
T  15312069 cttcaacaatcgtggtgcgatgcttctccatcgtggcacgattctc-cagatttctgattttaagttaactctcacaat 15311992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Original strand, 22801354 - 22801396
Alignment:
Q  129 aactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||||||||||||| |||| |||||||||||||||| ||||    
T  22801354 aactctcacaattctctaccttgacttcaaatcagtgaagatg 22801396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36919989 - 36920043
Alignment:
Q  1 catcgtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctca 55  Q
    |||||||||||  || |||||||||||| |||||  |||||||||||||||||||    
T  36919989 catcgtgccacgatgcgaccccatcgtgccacgatttttccagtgacttgcctca 36920043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36921897 - 36921951
Alignment:
Q  1 catcgtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctca 55  Q
    |||||||||||  || |||||||||||| |||||  |||||||||||||||||||    
T  36921897 catcgtgccacaatgcgaccccatcgtgccacgatttttccagtgacttgcctca 36921951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 40091910 - 40091952
Alignment:
Q  94 cgtggcacgatttttgcagatcctgattttaagttaactctca 136  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||    
T  40091910 cgtgccacgattattgcagaacctgattttaagttaactctca 40091952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 4556511 - 4556552
Alignment:
Q  64 ttcaaccatcgtggcacgttgtttctccatcgtggcacgatt 105  Q
    |||||| ||||||||| |||| ||||||||||||||||||||    
T  4556511 ttcaacaatcgtggcatgttgcttctccatcgtggcacgatt 4556552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 18586691 - 18586615
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaa 139  Q
    ||||||| |||||||  || || |||||||||||||||||||| |  |||||  ||||||||||||||||||||||||    
T  18586691 cttcaacaatcgtggtgcgatgcttctccatcgtggcacgattctc-cagatttctgattttaagttaactctcacaa 18586615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 36922000 - 36922033
Alignment:
Q  105 ttttgcagatcctgattttaagttaactctcaca 138  Q
    ||||||||| ||||||||||||||||||||||||    
T  36922000 ttttgcagaacctgattttaagttaactctcaca 36922033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 6764729 - 6764654
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 138  Q
    ||||||| |||||||||||  | |||| ||||||||||||||| |  |||| | |||||||||||||||||||||||    
T  6764729 cttcaacaatcgtggcacgaagcttctacatcgtggcacgattctc-cagaattctgattttaagttaactctcaca 6764654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 8631887 - 8631958
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactct 134  Q
    ||||||| |||||||||||  | |||||||||||||||||||| |  |||| | |||||||||||||||||||    
T  8631887 cttcaacaatcgtggcacgaagcttctccatcgtggcacgattctc-cagaattctgattttaagttaactct 8631958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 3276070 - 3275919
Alignment:
Q  21 ccatcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctg 118  Q
    ||||||||||||||  |||| |||||||| | ||| ||  || ||||||| |||||||||| ||| ||||||||||||||||| ||| | |||||  |||    
T  3276070 ccatcgtggcacgatttttcaagtgacttccttcagaatcttgcttcaacaatcgtggcacattgcttctccatcgtggcacg-tttctccagatttctg 3275972  T
Q  119 attttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  3275971 attttaagttaactctcgcaattctccaccttgacttcaaatcagtgatgatg 3275919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 25684412 - 25684261
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgat 120  Q
    |||||||||||||||||||||||| ||| ||    |   | |||||||||||||||| || || |||||||||||||||||||  |  |||||  |||||    
T  25684412 catcgtggcacgaaatttccagtgtcttcccaggaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctc-cagatttctgat 25684314  T
Q  121 tttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatgtc 173  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25684313 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatgtc 25684261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 27829139 - 27829060
Alignment:
Q  92 atcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27829139 atcgtgccacgattcctgcagatcctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 27829060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 4812902 - 4813051
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgat 120  Q
    |||||||||||||||||||||||| ||| ||    |   | |||||||||||||||| || || |||||||||||||||||||  |  |||||  |||||    
T  4812902 catcgtggcacgaaatttccagtgtcttcccaggaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactc-cagatttctgat 4813000  T
Q  121 tttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4813001 tttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 4813051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 15072554 - 15072473
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||||| |||||||  ||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15072554 ccatcgtgtcacgattcctgcagaatctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 15072473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 28332359 - 28332251
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    ||||| |||||||||| || || |||||||||||||||||||  |  |||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  28332359 cttcagccatcgtggcgcgatgcttctccatcgtggcacgatgctc-cagatttctgattttaagttaactctcacaattctccaccttgacttcaaatc 28332261  T
Q  162 agtgatgatg 171  Q
    || |||||||    
T  28332260 agcgatgatg 28332251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 18812691 - 18812635
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18812691 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 18812635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 590488 - 590431
Alignment:
Q  116 ctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatgtc 173  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  590488 ctgattttaagttaactctcacaattcttcaccttgacttcaaatcagtgatgatgtc 590431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 43081745 - 43081689
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  43081745 cctgattttaagttaactctcacaattctccaccttgacttcaaatcaatgatgatg 43081689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 16752977 - 16753087
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    |||||||||||||||| || ||  |||| |||||||||||||  |  |||||  ||||||||||||||| |||||||||||||||||| ||||||||||     
T  16752977 cttcaaccatcgtggcgcgatgcctctctatcgtggcacgatgctc-cagatttctgattttaagttaagtctcacaattctccaccttgacttcaaatt 16753075  T
Q  162 agtgatgatgtc 173  Q
    ||||||||||||    
T  16753076 agtgatgatgtc 16753087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 28895228 - 28895121
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatca 162  Q
    ||||||| |||||||| || || |||| ||||||||||||||| |   | ||  | |||||||||||| |||||||||||||||||| ||||||||||||    
T  28895228 cttcaacaatcgtggcgcgatgcttctacatcgtggcacgattctccaaaatttttattttaagttaagtctcacaattctccaccttgacttcaaatca 28895129  T
Q  163 gtgatgat 170  Q
    ||||||||    
T  28895128 gtgatgat 28895121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 21033632 - 21033553
Alignment:
Q  26 gtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggcacgatt 105  Q
    |||||||||  |||||||||||| || ||||||| || ||||||| |||||||||||||| ||||||||||||||||||||    
T  21033632 gtggcacgatttttccagtgact-gcttcacaaacttgcttcaacaatcgtggcacgttgcttctccatcgtggcacgatt 21033553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 12517517 - 12517565
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||||| |||||||  |||||||||||||||||||||||||||||||    
T  12517517 ccatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 12517565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 27826828 - 27826781
Alignment:
Q  92 atcgtggcacgatttttgcagatcctgattttaagttaactctcacaa 139  Q
    |||||| |||||||  ||||||||||||||||||||||||||||||||    
T  27826828 atcgtgccacgattcctgcagatcctgattttaagttaactctcacaa 27826781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 28252078 - 28252122
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactct 134  Q
    |||||||| |||||||  |||||||||||||||||||||||||||    
T  28252078 ccatcgtgccacgattcctgcagatcctgattttaagttaactct 28252122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 9021522 - 9021638
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctga 119  Q
    ||||||||||||||| |||||||  ||| ||||| ||  || ||||||| |||||| | || || |||||||||||||||||||| |  |||| | ||||    
T  9021522 catcgtggcacgaaaattccagtagctt-cctcagaatcttgcttcaacaatcgtgacgcgatgcttctccatcgtggcacgattctc-cagaattctga 9021619  T
Q  120 ttttaagttaactctcaca 138  Q
    |||||||||||||||||||    
T  9021620 ttttaagttaactctcaca 9021638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 29555242 - 29555318
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaa 139  Q
    ||||||| |||||||| || || ||||||||||| |||||||| |  |||||  ||||||||||||||||||||||||    
T  29555242 cttcaacaatcgtggcgcgatgcttctccatcgtagcacgattctc-cagatttctgattttaagttaactctcacaa 29555318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 30478783 - 30478633
Alignment:
Q  21 ccatcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctg 118  Q
    |||||||| |||||||||||||||  ||| ||||| ||  || ||||||| |||||||| || || |||||||||||||||||||| |  |||||  |||    
T  30478783 ccatcgtgccacgaaatttccagtagctt-cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctc-cagatttctg 30478686  T
Q  119 attttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30478685 attttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 30478633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 17943285 - 17943175
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    ||||||| |||||||| || || |||||||||||||||||||| |  |||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  17943285 cttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctc-cagatttctgattttaagttaactctcacaattctccaccttgacttcaaatc 17943187  T
Q  162 agtgatgatgtc 173  Q
    ||||||||||||    
T  17943186 agtgatgatgtc 17943175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 28462777 - 28462879
Alignment:
Q  71 atcgtggcacgttgtttctccatcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgat 170  Q
    |||||||||||||| ||||  |||| |||||||||| | |||| |||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||    
T  28462777 atcgtggcacgttgcttctgaatcgaggcacgatttctccagaacctgattttaagttaactttcataattctccaccttgacttcaaatcagtgatgat 28462876  T
Q  171 gtc 173  Q
    |||    
T  28462877 gtc 28462879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 2740669 - 2740561
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    |||||||||||||||| || || |||||||||||||||||||  |  |||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  2740669 cttcaaccatcgtggcgcgatgcttctccatcgtggcacgatactc-cagatttctgattttaagttaactctcacaattctccaccttgacttcaaatc 2740571  T
Q  162 agtgatgatg 171  Q
    ||||||||||    
T  2740570 agtgatgatg 2740561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 63 - 171
Target Start/End: Original strand, 22712951 - 22713059
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    ||||||| |||||||| || || |||||||||||||||||||| |  |||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  22712951 cttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctc-cagatttctgattttaagttaactctcacaattctccaccttgacttcaaatc 22713049  T
Q  162 agtgatgatg 171  Q
    ||||||||||    
T  22713050 agtgatgatg 22713059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 39686711 - 39686603
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    |||||||||||||||| || || |||||||||||||||||||  |  |||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  39686711 cttcaaccatcgtggcgcgatgcttctccatcgtggcacgatgctc-cagatttctgattttaagttaactctcacaattctccaccttgacttcaaatc 39686613  T
Q  162 agtgatgatg 171  Q
    ||||||||||    
T  39686612 agtgatgatg 39686603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 20050438 - 20050587
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctga 119  Q
    ||||||||||||||| |||||||  ||| ||||| ||  || || |||| ||||||||||| || |||||||||||||||||||| |  |||| |  |||    
T  20050438 catcgtggcacgaaaattccagtagctt-cctcagaatcttgctgcaacaatcgtggcacgatgcttctccatcgtggcacgattctc-cagaattttga 20050535  T
Q  120 ttttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20050536 ttttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 20050587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 30262265 - 30262324
Alignment:
Q  112 gatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30262265 gatcctgattttaagttaactctcacaattctccacctcgacttcaaatcaatgatgatg 30262324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 6259306 - 6259387
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    |||||||| |||||||| |||||| |||||||||||||||||||||  |||||||||||| ||||| |||||||||||||||    
T  6259306 ccatcgtgccacgatttctgcagaacctgattttaagttaactctcttaattctccaccttgactttaaatcagtgatgatg 6259387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 36559335 - 36559391
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36559335 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 36559391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 19502413 - 19502579
Alignment:
Q  1 catcgtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggca 100  Q
    |||||||||||  || |||||||||||| |||||  ||||||||| ||||||| | ||| |    |  |||||||| |||||||  |  |||||||| ||    
T  19502413 catcgtgccacgatgcgaccccatcgtgccacgatttttccagtgccttgcctaaaaaactgaaacctccatcgtgccacgttgccttgccatcgtgcca 19502512  T
Q  101 cgatttttgcagat-cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgat 167  Q
    ||||| | |||||  |||||||||||||||||| |||||||||||||||| || ||||||||||||||    
T  19502513 cgattct-gcagaaacctgattttaagttaactatcacaattctccaccttgaattcaaatcagtgat 19502579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 38190766 - 38190648
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaattctt-caaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctga 119  Q
    |||||||||||||| ||||||||||||||| |||  |  || || |||| |||||||||||||| ||||||||||||||||| ||| | || | ||||||    
T  38190766 catcgtggcacgaattttccagtgacttgcttcaggatcttgtttcaacaatcgtggcacgttgcttctccatcgtggcacg-tttctccatattcctga 38190668  T
Q  120 ttttaagttaactctcacaa 139  Q
    |||||| |||||||||||||    
T  38190667 ttttaaattaactctcacaa 38190648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 40032538 - 40032587
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcacaa 139  Q
    |||||||| |||||||| |||||| |||||||||||||||||||||||||    
T  40032538 ccatcgtgccacgatttctgcagaacctgattttaagttaactctcacaa 40032587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 37171209 - 37171284
Alignment:
Q  64 ttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcacaa 139  Q
    |||||| ||| |||||||||| ||||||||||||||||| ||| | |||| |||| |||||||||||||||||||||    
T  37171209 ttcaacaatcatggcacgttgcttctccatcgtggcacg-tttctccagattccttattttaagttaactctcacaa 37171284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 2735933 - 2735856
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcacaat 140  Q
    |||||||||||||||| || || |||||||||||||||||| |  | |||| | |||||||||||||||||||||||||    
T  2735933 cttcaaccatcgtggcgcgatgcttctccatcgtggcacga-tactccagatttctgattttaagttaactctcacaat 2735856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 12781635 - 12781751
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaatt-cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctga 119  Q
    ||||||| |||||||||||||||  ||| ||||| ||  || ||||||| |||||||| || || |||||||||||||||||||| |  |||||  ||||    
T  12781635 catcgtgccacgaaatttccagtagctt-cctcagaatcttgcttcaacaatcgtggcgcgatgcttctccatcgtggcacgattatc-cagatttctga 12781732  T
Q  120 ttttaagttaactctcaca 138  Q
    |||||||||||||||||||    
T  12781733 ttttaagttaactctcaca 12781751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 39679773 - 39679698
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 138  Q
    |||||||||||||||| || || |||||||||||||||||| |  | |||| | |||||||||||||||||||||||    
T  39679773 cttcaaccatcgtggcgcgatgcttctccatcgtggcacga-tgctccagatttctgattttaagttaactctcaca 39679698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 21521186 - 21521237
Alignment:
Q  90 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcacaatt 141  Q
    |||||||| |||||||  || ||| |||||||||||||||||||||||||||    
T  21521186 ccatcgtgccacgattcctgtagaacctgattttaagttaactctcacaatt 21521237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 9653824 - 9653786
Alignment:
Q  70 catcgtggcacgttgtttctccatcgtggcacgattttt 108  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  9653824 catcgtggcacgttggttttccatcgtggcacgattttt 9653786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 42064277 - 42064231
Alignment:
Q  92 atcgtggcacgatttttgcagatcctgattttaagttaactctcaca 138  Q
    |||||| |||||||  |||||||| ||||||||||||||||||||||    
T  42064277 atcgtgccacgattcctgcagatcttgattttaagttaactctcaca 42064231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 28462706 - 28462787
Alignment:
Q  21 ccatcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacg 102  Q
    |||||||| |||||  ||| ||||||||||| | |  || ||||||||| |||||||||||||| ||||  |||||||||||    
T  28462706 ccatcgtgacacgattttttcagtgacttgcttgaggaacttcttcaacaatcgtggcacgttgcttctgaatcgtggcacg 28462787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 45567137 - 45567096
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgat 104  Q
    |||||||||||||||| || || |||||||||||||||||||    
T  45567137 cttcaaccatcgtggcgcgatgcttctccatcgtggcacgat 45567096  T

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Target: scaffold1764 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 1183 - 1075
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcacaattctccacctcgacttcaaatc 161  Q
    ||||||| |||||||| || || |||||||||||||||||||| |  |||||  |||||||||||||||||||||||||||||||||| |||||||||||    
T  1183 cttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctc-cagatttctgattttaagttaactctcacaattctccaccttgacttcaaatc 1085  T
Q  162 agtgatgatg 171  Q
    ||||||||||    
T  1084 agtgatgatg 1075  T

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Target: scaffold0339 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 3847 - 3747
Alignment:
Q  37 tttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatcctgattttaagttaactctca 136  Q
    |||||| |||||||| |||| ||| |||||||||||| | |||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||||    
T  3847 tttccaatgacttgcttcacgaaaatcttcaaccatcatagcacgttgtttctccatcgtggcacgatttctacatatcctaattttaagttaactctca 3748  T
Q  137 c 137  Q
    |    
T  3747 c 3747  T

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Target: scaffold0250 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 2659 - 2597
Alignment:
Q  108 tgcagatcctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgat 170  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2659 tgcagatcttgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgat 2597  T

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Target: scaffold0140 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 24213 - 24157
Alignment:
Q  115 cctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatg 171  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24213 cctgattttaagttaactctcacaattctccaccttgacttcaaatcagtgatgatg 24157  T

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Target: scaffold0025 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 69811 - 69868
Alignment:
Q  116 ctgattttaagttaactctcacaattctccacctcgacttcaaatcagtgatgatgtc 173  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  69811 ctgattttaagttaactcttacaattctccactttgacttcaaatcagtgatgatgtc 69868  T

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Target: scaffold0131 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14905 - 14851
Alignment:
Q  1 catcgtgccaccttgtgaccccatcgtggcacgaaatttccagtgacttgcctca 55  Q
    ||||||| ||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  14905 catcgtgtcacgttgtgatcccatcgtgccacgaaatttccagtgacttgcctca 14851  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 41950 - 42022
Alignment:
Q  66 caaccatcgtggcacgttgtttctccatcgtggcacgatttttgcag-atcctgattttaagttaactctcaca 138  Q
    |||| |||||||||||  | |||||||||||||||||||| || ||| || |||||||||||||||||||||||    
T  41950 caacaatcgtggcacgaagcttctccatcgtggcacgattctt-cagaattctgattttaagttaactctcaca 42022  T

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Target: scaffold0256 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 16051 - 15976
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcagatc-ctgattttaagttaactctcaca 138  Q
    ||||||| |||||||| || || |||||||||||||||||||| |  |||||  |||||||||||||||||||||||    
T  16051 cttcaacaatcgtggcgcgatgcttctccatcgtggcacgattctc-cagatttctgattttaagttaactctcaca 15976  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 224609 - 224527
Alignment:
Q  22 catcgtggcacgaaatttccagtgacttgcctcacaaaattcttcaaccatcgtggcacgttgtttctccatcgtggcacgat 104  Q
    |||||||||||||||||||||||| ||| ||    |   | |||||||||||||||| || || |||||||||||||||||||    
T  224609 catcgtggcacgaaatttccagtgtcttcccaggaatcttgcttcaaccatcgtggcgcgatgcttctccatcgtggcacgat 224527  T

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Target: scaffold0552 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 1274 - 1349
Alignment:
Q  63 cttcaaccatcgtggcacgttgtttctccatcgtggcacgatttttgcaga-tcctgattttaagttaactctcaca 138  Q
    ||||||| |||||||||||  | |||| ||||||||||||||| |  |||| | |||||||||||||||||||||||    
T  1274 cttcaacaatcgtggcacgaagcttctacatcgtggcacgattctc-cagaattctgattttaagttaactctcaca 1349  T

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Target: scaffold0377 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 16597 - 16554
Alignment:
Q  70 catcgtggcacgttgtttctccatcgtggcacgatttttgcagat 114  Q
    ||||||||||||||| | ||||||||||||||||||||| |||||    
T  16597 catcgtggcacgttggt-ctccatcgtggcacgatttttccagat 16554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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