View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0305_low_22 (Length: 251)

Name: NF0305_low_22
Description: NF0305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0305_low_22
NF0305_low_22
[»] chr2 (3 HSPs)
chr2 (41-237)||(16387661-16387858)
chr2 (203-237)||(23079161-23079195)
chr2 (203-237)||(25403009-25403043)
[»] chr8 (3 HSPs)
chr8 (166-237)||(450878-450949)
chr8 (203-237)||(18853857-18853891)
chr8 (203-237)||(26300697-26300731)
[»] chr7 (1 HSPs)
chr7 (170-236)||(9185852-9185918)
[»] scaffold0188 (1 HSPs)
scaffold0188 (203-237)||(18638-18672)
[»] chr1 (2 HSPs)
chr1 (203-237)||(19359532-19359566)
chr1 (170-237)||(775844-775911)
[»] chr6 (1 HSPs)
chr6 (127-236)||(18232142-18232252)
[»] chr3 (1 HSPs)
chr3 (205-237)||(3324242-3324274)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 41 - 237
Target Start/End: Original strand, 16387661 - 16387858
Alignment:
Q  41 ctttgtaggaattttgtgcctcttggtaaaacatgttttctcttcatcttccattgtcaacattgaagagttttactacaactgcccaaaaaactttggt 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16387661 ctttgtaggaattttgtgcctcttggtaaaacatgttttctcttcatcttccattgtcaacattgaagagttttactacaactgcccaaaaaactttggt 16387760  T
Q  141 gatgagcatagcaacaac-aagtctcgtcttcatcctccacattaacatcaatgttcactgagtcatcaagaatcttgttaaattccgccaattgctc 237  Q
     ||||||||||||||||| ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  16387761 aatgagcatagcaacaacaaagtctcgtcttcatcctccacattcacttcaatgttcgctgagtcatcaagaatcttgttaaattccgtcaattgctc 16387858  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 23079195 - 23079161
Alignment:
Q  203 tcatcaagaatcttgttaaattccgccaattgctc 237  Q
    ||||||||||| |||||||||||||||||||||||    
T  23079195 tcatcaagaattttgttaaattccgccaattgctc 23079161  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 25403009 - 25403043
Alignment:
Q  203 tcatcaagaatcttgttaaattccgccaattgctc 237  Q
    ||||||||||||||||||||||||| |||||||||    
T  25403009 tcatcaagaatcttgttaaattccgtcaattgctc 25403043  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 450949 - 450878
Alignment:
Q  166 gtcttcatcctccacattaacatcaatgttcactgagtcatcaagaatcttgttaaattccgccaattgctc 237  Q
    ||||||||| ||||| || || | |||||||||  |||||||||||||||||||||||||| ||||||||||    
T  450949 gtcttcatcttccacgtttacttaaatgttcaccaagtcatcaagaatcttgttaaattccaccaattgctc 450878  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 18853891 - 18853857
Alignment:
Q  203 tcatcaagaatcttgttaaattccgccaattgctc 237  Q
    |||||||||||||||||||||||||||||||||||    
T  18853891 tcatcaagaatcttgttaaattccgccaattgctc 18853857  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 26300697 - 26300731
Alignment:
Q  203 tcatcaagaatcttgttaaattccgccaattgctc 237  Q
    |||||||||||||||||||||||||||||||||||    
T  26300697 tcatcaagaatcttgttaaattccgccaattgctc 26300731  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 9185918 - 9185852
Alignment:
Q  170 tcatcctccacattaacatcaatgttcactgagtcatcaagaatcttgttaaattccgccaattgct 236  Q
    ||||| |||| |||||||||||||||  |  | ||||||||||||||||||||||||||||||||||    
T  9185918 tcatcttccatattaacatcaatgttggccaaatcatcaagaatcttgttaaattccgccaattgct 9185852  T

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Target: scaffold0188 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 18672 - 18638
Alignment:
Q  203 tcatcaagaatcttgttaaattccgccaattgctc 237  Q
    |||||||||||||||||||||||||||||||||||    
T  18672 tcatcaagaatcttgttaaattccgccaattgctc 18638  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 19359566 - 19359532
Alignment:
Q  203 tcatcaagaatcttgttaaattccgccaattgctc 237  Q
    |||||||||||||||||||||||||||||||||||    
T  19359566 tcatcaagaatcttgttaaattccgccaattgctc 19359532  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 775911 - 775844
Alignment:
Q  170 tcatcctccacattaacatcaatgttcactgagtcatcaagaatcttgttaaattccgccaattgctc 237  Q
    ||||| |||| |||||| ||||||||  |  | ||||||||||| |||||||||||||||||||||||    
T  775911 tcatcttccatattaacttcaatgttggccaaatcatcaagaattttgttaaattccgccaattgctc 775844  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 18232142 - 18232252
Alignment:
Q  127 caaaaaactttggtgatgagcatagcaacaacaa-gtctcgtcttcatcctccacattaacatcaatgttcactgagtcatcaagaatcttgttaaattc 225  Q
    ||||| |||||||| |||| || || |||||||| | || ||| ||||| ||||||||||| ||||||||  |  | ||||||||||| |||||||||||    
T  18232142 caaaagactttggtaatgaacaaagtaacaacaaagccttgtcctcatcttccacattaacttcaatgttagccaaatcatcaagaattttgttaaattc 18232241  T
Q  226 cgccaattgct 236  Q
    | | |||||||    
T  18232242 ctctaattgct 18232252  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 3324274 - 3324242
Alignment:
Q  205 atcaagaatcttgttaaattccgccaattgctc 237  Q
    ||||||||| |||||||||||||||||||||||    
T  3324274 atcaagaattttgttaaattccgccaattgctc 3324242  T

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