View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0305_low_3 (Length: 490)
Name: NF0305_low_3
Description: NF0305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0305_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 97 - 483
Target Start/End: Complemental strand, 22757991 - 22757605
Alignment:
| Q |
97 |
acatatcctaaacaaaatcaagacatggttttagtaaatttcacaaaagaaaattggatttgttaacacgaattctgttaaaaaccataaatatggtgtt |
196 |
Q |
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| T |
22757991 |
acatatcctaaacaaaatcaagacatggttttagtaaatttcacaaaagaaaattggatttgttaacacgaattctgttaaaaaccataaagatggtgtt |
22757892 |
T |
|
| Q |
197 |
attaccagtgatggaaggcattctgtggcatgcttccgaagaacagaaaagccaccatgagtacttgtatcggagttagttaagaccttgctgaaggagt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22757891 |
attaccagtgatggaaggcattctgtggcatgcttccgaagaacagaaaagccaccatgagtacttgtatcggagttagttaagaccttgctgaaggagt |
22757792 |
T |
|
| Q |
297 |
gagttcttggtcttggaggttcagcaggacaaggatcaaggcttgtaggctcagtttgctaagcaaatttggtccattagaaatccaaacaaatcaaaga |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22757791 |
gagttcttggtcttggaggttcagcaggacaaggatcaaggcttgtaggctcagtttgctaagcaaatttggtccattagaaatccaaacaaattaaaga |
22757692 |
T |
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| Q |
397 |
aaagaatctaagtttgaccataaaaatatttaagaatcaagaagagaagctacaatcttacattagattctggtaccagaattatct |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22757691 |
aaagaatctaagtttgaccataaaaatatttaagaatcaagaagagaagctacaatcttacattagattctggtaccagagttatct |
22757605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 7076540 - 7076598
Alignment:
| Q |
209 |
ggaaggcattctgtggcatgcttccgaagaacagaaaagccaccatgagtacttgtatc |
267 |
Q |
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| T |
7076540 |
ggaaggcattctgtggcatgtttcctgagaacagagaagccaccatgtgtactagtatc |
7076598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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