View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0305_low_4 (Length: 466)
Name: NF0305_low_4
Description: NF0305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0305_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 30 - 391
Target Start/End: Complemental strand, 1350958 - 1350593
Alignment:
| Q |
30 |
cacacaaccaagtccaacatagccaaagaaaaatcacaagcaagaatatcaactnnnnnnncgcctctttccaaaacaacaacaa---------gacgaa |
120 |
Q |
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| T |
1350958 |
cacacaaccaagtccaacatagccaaagaaaaatcacaagcaacaatatcaactaaaaaaacgcttctttccaaaacaacaacaacaacaacaagacgaa |
1350859 |
T |
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| Q |
121 |
agcaaataataatgagtaaaatgaataggg-tgggttgcaactagatgacaaacctctgatatagcggaaatcaaagggtgtatgcctagtgttttgaga |
219 |
Q |
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| T |
1350858 |
agcaaataataatgagtaaaatgaataggggtgggttgcaactagatgacaaacctctgatatagcggaaatcaaagggtgtatgcctagtgttttgaga |
1350759 |
T |
|
| Q |
220 |
cagttctgagaacatggcgatgatagaaagtgagtgagtgacgcaaactggtgtctatgtcgtcgacggcaaaaggctgggggcttgaagtgggtgaagg |
319 |
Q |
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| T |
1350758 |
cagttctgagaacatggcgatgatagaaagtgagtgagtgacgcaaactggtgtctatgtcgtcgacggcaaaaggct--gggcttgacgtggatgaagg |
1350661 |
T |
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| Q |
320 |
tcgttatgaaatgcagaggtgttgattgctaggtcgggaatgaagatgatagtgaaggtcgttatgaaatgc |
391 |
Q |
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| T |
1350660 |
ttgtgaggga---cagaggtgttgattgctaggtcgggaatgaagatgatagtgaaggt-gttatgaaatgc |
1350593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 455
Target Start/End: Complemental strand, 1350594 - 1350550
Alignment:
| Q |
411 |
gctaaggaatttatatttgactattacttttctcaccctgttcat |
455 |
Q |
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| T |
1350594 |
gctaaggaatttatatttgactattacttttctcatcctattcat |
1350550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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