View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0306_high_7 (Length: 367)
Name: NF0306_high_7
Description: NF0306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0306_high_7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 36 - 207
Target Start/End: Original strand, 15827497 - 15827668
Alignment:
| Q |
36 |
gtcaagtgtatggtttctctcataaaaaatttcattttgaacattgggatatgactcgcaagtggaatttcttatgatataaccaacattttgtattttg |
135 |
Q |
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| T |
15827497 |
gtcaagtgtatggtttctctcataaaaaatttcattttgaacattgggatatgactcgcaagtggaatttctcatgatataaccaacattttgtattttg |
15827596 |
T |
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| Q |
136 |
atggacatgaaannnnnnncattgtgacctattgtattctcaaccccatagaaatcgtaataaaatttgtgg |
207 |
Q |
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| T |
15827597 |
atggacatgaaatttgtttcattgtgacctattgtattctcaaccccatagaaatcgtaataaaatttgtgg |
15827668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 206 - 367
Target Start/End: Original strand, 24438793 - 24438955
Alignment:
| Q |
206 |
ggataaaaagcaatgctttcaaatttctccaaaacaaaggtaagaaagaaa-gtatgcttatgatctttgtaatctataattgagaataacacacagaac |
304 |
Q |
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| T |
24438793 |
ggataaaaagcaatgctttcaaatttctccaaaacaaagataagaaagaaaagtatgcttatgatctttgtaatctataattgagaacaacacacagaac |
24438892 |
T |
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| Q |
305 |
cctctatacatagatcaacagttcaattagagtaaacaattattttcgcaatgaactttatta |
367 |
Q |
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| T |
24438893 |
cctctatatatagatcaacagttcaattagagtaaacaattattttcgcaaaaaactttatta |
24438955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 24464001 - 24464053
Alignment:
| Q |
206 |
ggataaaaagcaatgctttcaaatttctccaaaacaaaggtaagaaagaaagt |
258 |
Q |
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| T |
24464001 |
ggataaaaagctaagctttcaaatatctccaagacaaagataacaaagaaagt |
24464053 |
T |
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